Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:vertebrate trait
go back to main search page
Accession:VT:0000001 term browser browse the term
Definition:Any measurable or observable characteristic of a vertebrate organism.


show annotations for term's descendants           Sort by:
blood pressure trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR4A1 nuclear receptor subfamily 4 group A member 1 ISO RGD PMID:24722447 RGD:12910103 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655 		JBrowse link
blood urea nitrogen amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR4A1 nuclear receptor subfamily 4 group A member 1 ISO RGD PMID:24722447 RGD:12910103 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655 		JBrowse link
cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR4A1 nuclear receptor subfamily 4 group A member 1 ISO RGD PMID:24722447 RGD:12910103 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655 		JBrowse link
coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein IAGP Coat colour, saddle tan vs black-and-tan
Coat colour, agouti		 OMIA PMID:8202545 PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 More... NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896 		JBrowse link
G CBD103 beta-defensin 103 IAGP Coat colour, dominant black OMIA PMID:12692166 PMID:15649147 PMID:17483404 PMID:17947548 PMID:19197024 More... NCBI chr16:58,965,216...58,966,773
Ensembl chr16:58,965,216...58,967,712 		JBrowse link
G MC1R melanocortin 1 receptor IAGP Coat colour, melanistic mask OMIA PMID:12692165 PMID:21353269 PMID:29932470 PMID:33672409 PMID:34751460 More... NCBI chr 5:63,694,296...63,695,249 JBrowse link
G PMEL premelanosome protein IAGP Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098 		JBrowse link
G PSMB7 proteasome 20S subunit beta 7 IAGP Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 More... NCBI chr 9:58,529,646...58,593,016
Ensembl chr 9:58,529,723...58,593,016 		JBrowse link
macrophage migration trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR4A1 nuclear receptor subfamily 4 group A member 1 ISO RGD PMID:24722447 RGD:12910103 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655 		JBrowse link
triglyceride amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR4A1 nuclear receptor subfamily 4 group A member 1 ISO RGD PMID:24722447 RGD:12910103 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655 		JBrowse link
Term paths to the root
paths to the root