optic cup - Ontology Report - Rat Genome Database

Advanced Search (OLGA)

CROSS-SPECIES ANATOMY - ANNOTATIONS	{{ watchLinkText }}
The Basic subset of the UBERON integrated, cross-species anatomy ontology is downloaded weekly from http://berkeleybop.org/ontologies/uberon/basic.obo. For more information about this ontology see the "About" page on the UBERON website at http://uberon.github.io/about.html.

Term:	optic cup	go back to main search page
Accession:	UBERON:0003072	browse the term
Definition:	Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP].
Comment:	[homology-note] "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000167", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}
Synonyms:	related_synonym:	eye cup; eyecup; ocular cup; ophtalmic cup
	xref:	BTO:0005351; EHDAA2:0001303; EHDAA:2912; EMAPA:16674; NCI:C34233; SCTID:308789007; TAO:0001202; UMLS:C0231109; VHOG:0000167; ZFA:0001202

show annotations for term's descendants Sort by:
Rat (0) Mouse (0) Human (0) Chinchilla (0) Bonobo (0) Dog (0) Squirrel (0) Pig (0) Green Monkey (0) Naked Mole-rat (0) All

0 Annotations Found

Term paths to the root

Path 1
Term	Annotations
UBERON ontology	0
anatomical entity	0
material anatomical entity	0
anatomical structure	0
ectoderm-derived structure	0
optic cup	0
camera-type eye +	0
dorsal part of optic cup	0
optic stalk +	0
presumptive neural retina +	0
presumptive retinal pigmented epithelium +	0
retina +	0
sinus of von Szily	0
ventral part of optic cup +	0
Path 2
Term	Annotations
UBERON ontology	0
anatomical entity	0
material anatomical entity	0
anatomical structure	0
multicellular anatomical structure	0
multicellular organism	0
embryo	0
embryonic structure	0
embryonic tissue	0
germ layer / neural crest	0
germ layer	0
ectoderm	0
ectoderm-derived structure	0
neurectoderm	0
presumptive neural plate	0
neural plate	0
pre-chordal neural plate	0
eye primordium	0
immature eye	0
optic vesicle	0
optic cup	0
camera-type eye +	0
dorsal part of optic cup	0
optic stalk +	0
presumptive neural retina +	0
presumptive retinal pigmented epithelium +	0
retina +	0
sinus of von Szily	0
ventral part of optic cup +	0

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message