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CROSS-SPECIES ANATOMY - ANNOTATIONS

The Basic subset of the UBERON integrated, cross-species anatomy ontology is downloaded weekly from http://berkeleybop.org/ontologies/uberon/basic.obo. For more information about this ontology see the "About" page on the UBERON website at http://uberon.github.io/about.html.
Term:chordate pharynx
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Accession:UBERON:0001042 term browser browse the term
Definition:A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED].
Comment:Consider generalizing to deuterostome pharynx; [homology-note] "(...) the earliest vertebrates possessed unjointed internal and external branchial arches, and musculature encircling the pharynx.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000462", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) Box essay 13.1 and Box figure I, p.502-503", source="http://bgee.unil.ch/"}
Synonyms:broad_synonym: pharynx
 xref: AAO:0000967;   BTO:0001049;   CALOHA:TS-0785;   EFO:0000836;   EHDAA2:0001458;   EHDAA:2947;   EMAPA:16706;   EV:0100065;   FMA:46688;   GAID:155;   MA:0000432;   MESH:D010614;   NCI:C12425;   SCTID:181211006;   TAO:0000056;   UMLS:C0031354;   VHOG:0000462;   Wikipedia:Pharynx;   XAO:0003227;   ZFA:0000056;   galen:Pharynx
 axiom_lost: relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO;   relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO


show annotations for term's descendants           Sort by:
Term paths to the root
Path 1
Term Annotations click to browse term
  UBERON ontology 0
    anatomical entity 0
      material anatomical entity 0
        developing anatomical structure 0
          pharyngeal region of foregut 0
            chordate pharynx 0
              Hatschek's diverticulum + 0
              branchial basket 0
              epibranchial arborescent organ 0
              epibranchial organ 0
              gill opening 0
              hypopharynx + 0
              nasopharynx + 0
              oropharynx + 0
              pharyngeal bar 0
              pharyngeal epithelium + 0
              pharyngeal gland + 0
              pharyngeal mesoderm 0
              pharyngeal mucosa + 0
              pharyngeal opening of pharyngotympanic tube 0
              pharyngeal raphe 0
              pharyngeal slit 0
              pharyngeal tubercle 0
              pharyngeal vasculature + 0
              pharyngobasilar fascia 0
              skeletal muscle tissue of pharynx 0
              submucosa of pharynx + 0
              thyroid diverticulum + 0
              thyroid primordium + 0
              tonsillar ring + 0
Path 2
Term Annotations click to browse term
  UBERON ontology 0
    anatomical entity 0
      material anatomical entity 0
        anatomical structure 0
          multicellular anatomical structure 0
            multicellular organism 0
              embryo 0
                embryonic structure 0
                  presumptive structure 0
                    presumptive gut 0
                      digestive tract 0
                        subdivision of digestive tract 0
                          foregut 0
                            pharyngeal region of foregut 0
                              chordate pharynx 0
                                Hatschek's diverticulum + 0
                                branchial basket 0
                                epibranchial arborescent organ 0
                                epibranchial organ 0
                                gill opening 0
                                hypopharynx + 0
                                nasopharynx + 0
                                oropharynx + 0
                                pharyngeal bar 0
                                pharyngeal epithelium + 0
                                pharyngeal gland + 0
                                pharyngeal mesoderm 0
                                pharyngeal mucosa + 0
                                pharyngeal opening of pharyngotympanic tube 0
                                pharyngeal raphe 0
                                pharyngeal slit 0
                                pharyngeal tubercle 0
                                pharyngeal vasculature + 0
                                pharyngobasilar fascia 0
                                skeletal muscle tissue of pharynx 0
                                submucosa of pharynx + 0
                                thyroid diverticulum + 0
                                thyroid primordium + 0
                                tonsillar ring + 0
paths to the root