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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:stop_gained_NMD_triggering
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Accession:SO:0002321 term browser browse the term
Definition:A stop_gained (SO:0001587) variant that is degraded by nonsense-mediated decay (NMD).
Comment:Added as per request from Ang Roberts as part of GenCC November 2020.
Synonyms:exact_synonym: stop gained variant-nonsense-mediated decay triggering;   stop gained-NMD triggering


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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      functional_effect_variant 0
        functionally_abnormal 0
          NMD_triggering_variant 0
            stop_gained_NMD_triggering 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  protein_altering_variant 0
                    inframe_variant 0
                      nonsynonymous_variant 0
                        stop_gained 0
                          stop_gained_NMD_triggering 0
paths to the root