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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:start_lost
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Accession:SO:0002012 term browser browse the term
Definition:A codon variant that changes at least one base of the canonical start codon.
Comment:Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts.
Synonyms:exact_synonym: Jannovar:start_lost;   VEP:start_lost;   snpEff:START_LOST
 xref: http://snpeff.sourceforge.net/SnpEff_manual.html;   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences


show annotations for term's descendants           Sort by:
Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  initiator_codon_variant 0
                    start_lost 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  protein_altering_variant 0
                    inframe_variant 0
                      nonsynonymous_variant 0
                        start_lost 0
paths to the root