intragenic_variant - Ontology Report - Rat Genome Database

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SEQUENCE ONTOLOGY - ANNOTATIONS	{{ watchLinkText }}
The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:	intragenic_variant	go back to main search page
Accession:	SO:0002011	browse the term
Definition:	A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping sequence.
Comment:	Requested by Pablo Cingolani, for use in SnpEff.
Synonyms:	exact_synonym:	Jannovar:intragenic_variant; intragenic variant; snpEff:INTRAGENIC
	xref:	http://snpeff.sourceforge.net/SnpEff_manual.html

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Term paths to the root

Path 1
Term	Annotations
SO ontology	0
sequence_variant	0
structural_variant	0
feature_variant	0
gene_variant	0
transcript_variant	0
intragenic_variant	0

paths to the root