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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:CRE
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Accession:SO:0001843 term browser browse the term
Definition:MERGED DEFINITION:\nTARGET DEFINITION: A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors.\n--------------------\nSOURCE DEFINITION: A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components.
Comment:New synonym Atf1/Pcr1 recognition motif added in response to Antonia Lock GitHub Issue Request #437, PMID:15716492
Synonyms:exact_synonym: ATF/CRE site;   Atf1/Pcr1 recognition motif;   M26 binding site;   M26_binding_site;   cyclic AMP response element;   m26 site
 alt_id: SO:0001900


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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_feature 0
      region 0
        biological_region 0
          gene_component_region 0
            promoter 0
              promoter_element 0
                CRE 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_feature 0
      region 0
        biological_region 0
          gene_group 0
            gene 0
              gene_member_region 0
                regulatory_region 0
                  transcriptional_cis_regulatory_region 0
                    cis_regulatory_module 0
                      TF_binding_site 0
                        promoter_element 0
                          CRE 0
paths to the root