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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:inframe_deletion
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Accession:SO:0001822 term browser browse the term
Definition:An inframe non synonymous variant that deletes bases from the coding sequence.
Synonyms:exact_synonym: ANNOVAR:nonframeshift deletion;   Jannovar:inframe_deletion;   VAT:deletionNFS;   VEP:inframe_deletion;   inframe_codon_loss
 related_synonym: inframe codon loss;   inframe decrease in CDS length;   inframe deletion;   snpEff:CODON_DELETION
 alt_id: SO:0001652
 xref: http://snpeff.sourceforge.net/SnpEff_manual.html;   http://vat.gersteinlab.org/formats.php "VAT";   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences


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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          feature_truncation 0
            inframe_deletion 0
              conservative_inframe_deletion 0
              disruptive_inframe_deletion 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  protein_altering_variant 0
                    inframe_variant 0
                      inframe_indel 0
                        inframe_deletion 0
                          conservative_inframe_deletion 0
                          disruptive_inframe_deletion 0
paths to the root