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The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at For more information about this ontology, see the Sequence Ontology Home Page at

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Accession:SO:0001631 term browser browse the term
Definition:A sequence variant located 5' of a gene.
Comment:Different groups annotate up and downstream to different lengths. The subtypes are specific and are backed up with cross references.
Synonyms:exact_synonym: Jannovar:upstream_gene_variant;   VEP:upstream_gene_variant;   snpEff:UPSTREAM;   upstream gene variant
 related_synonym: ANNOVAR:upstream

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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          intergenic_variant 0
            upstream_gene_variant 0
              2KB_upstream_variant 0
              5KB_upstream_variant 0
paths to the root