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The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at For more information about this ontology, see the Sequence Ontology Home Page at

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Accession:SO:0001628 term browser browse the term
Definition:A sequence variant located in the intergenic region, between genes.
Comment:EBI term Intergenic variations - More than 5 kb either upstream or downstream of a transcript.
Synonyms:exact_synonym: Jannovar:intergenic_variant;   Seattleseq:intergenic;   VEP:intergenic_variant;   intergenic;   intergenic variant;   snpEff:INTERGENIC
 related_synonym: ANNOVAR:intergenic
 xref: "Seattleseq";;

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Path 1
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  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          intergenic_variant 0
            conserved_intergenic_variant 0
            downstream_gene_variant + 0
            downstream_transcript_variant 0
            intergenic_1kb_variant 0
            upstream_gene_variant + 0
            upstream_transcript_variant 0
paths to the root