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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:intron_variant
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Accession:SO:0001627 term browser browse the term
Definition:A transcript variant occurring within an intron.
Comment:EBI term: Intronic variations - In intron.
Synonyms:exact_synonym: Jannovar:intron_variant;   Seattleseq:intron;   VAAST:intron_variant;   VEP:intron_variant;   intron variant;   intron_;   intronic;   snpEff:INTRON
 related_synonym: ANNOVAR:intronic;   Seattleseq:intron-near-splice
 xref: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq";   http://snpeff.sourceforge.net/SnpEff_manual.html;   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences


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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              intron_variant 0
                coding_transcript_intron_variant + 0
                conserved_intron_variant 0
                non_coding_transcript_intron_variant 0
                splice_site_variant + 0
paths to the root