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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:incomplete_terminal_codon_variant
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Accession:SO:0001626 term browser browse the term
Definition:A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed.
Comment:EBI term: Partial codon - Located within the final, incomplete codon of a transcript with a shortened coding sequence where the end is unknown.
Synonyms:exact_synonym: VEP:incomplete_terminal_codon_variant;   incomplete terminal codon variant;   partial_codon
 xref: http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences



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Term paths to the root
Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  terminator_codon_variant 0
                    incomplete_terminal_codon_variant 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  protein_altering_variant 0
                    inframe_variant 0
                      incomplete_terminal_codon_variant 0
paths to the root