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The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at For more information about this ontology, see the Sequence Ontology Home Page at

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Accession:SO:0001590 term browser browse the term
Definition:A sequence variant whereby at least one of the bases in the terminator codon is changed.
Comment:The terminal codon may be the terminator, or in an incomplete transcript the last available codon.
Synonyms:exact_synonym: VAT:endOverlap;   terminal codon variant;   terminal_codon_variant;   terminator codon variant
 alt_id: SO:0001625
 xref: "VAT";   loinc:LA6700-2 "Stop Codon Mutation"

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  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              coding_transcript_variant 0
                coding_sequence_variant 0
                  terminator_codon_variant 0
                    incomplete_terminal_codon_variant 0
                    stop_lost 0
                    stop_retained_variant 0
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