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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:frameshift_variant
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Accession:SO:0001589 term browser browse the term
Definition:A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three.
Comment:EBI term:Frameshift variations - In coding sequence, resulting in a frameshift.
Synonyms:exact_synonym: Jannovar:frameshift_variant;   Seattleseq:frameshift;   VAAST:frameshift_variant;   VEP:frameshift_variant;   frameshift variant;   frameshift_;   frameshift_coding;   snpEff:FRAME_SHIFT
 narrow_synonym: VAT:deletionFS;   VAT:insertionFS
 related_synonym: ANNOVAR:frameshift block substitution;   ANNOVAR:frameshift substitution;   Seattleseq:frameshift-near-splice
 xref: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq";   http://snpeff.sourceforge.net/SnpEff_manual.html;   http://vat.gersteinlab.org/formats.php "VAT";   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences;   loinc:LA6694-9 "Frameshift"



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Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              coding_transcript_variant 0
                coding_sequence_variant 0
                  protein_altering_variant 0
                    frameshift_variant 0
                      frame_restoring_variant 0
                      frameshift_elongation 0
                      frameshift_truncation 0
                      frameshift_variant_NMD_escaping 0
                      frameshift_variant_NMD_triggering 0
                      minus_1_frameshift_variant 0
                      minus_2_frameshift_variant 0
                      plus_1_frameshift_variant 0
                      plus_2_frameshift_variant 0
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