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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:stop_retained_variant
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Accession:SO:0001567 term browser browse the term
Definition:A sequence variant where at least one base in the terminator codon is changed, but the terminator remains.
Synonyms:exact_synonym: Jannovar:stop_retained_variant;   VAAST:stop_retained;   VAAST:stop_retained_variant;   VEP:stop_retained_variant;   snpEff:NON_SYNONYMOUS_STOP;   snpEff:SYNONYMOUS_STOP;   stop retained variant
 xref: http://snpeff.sourceforge.net/SnpEff_manual.html;   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences



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Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              exon_variant 0
                coding_sequence_variant 0
                  terminator_codon_variant 0
                    stop_retained_variant 0
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