Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.

Term:DMv5_motif
go back to main search page
Accession:SO:0001159 term browser browse the term
Definition:A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).
Synonyms:exact_synonym: DMv5;   DMv5 motif;   directional motif v5
 narrow_synonym: KTYRGTATWTTT
 related_synonym: promoter motif 6



show annotations for term's descendants           Sort by:
 

Term paths to the root
Path 1
Term Annotations click to browse term
  gene_component_region 0
    promoter 0
      promoter_element 0
        DMv5_motif 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_feature 0
      region 0
        biological_region 0
          gene_group 0
            gene 0
              gene_member_region 0
                regulatory_region 0
                  transcriptional_cis_regulatory_region 0
                    promoter 0
                      eukaryotic_promoter 0
                        RNApol_II_promoter 0
                          DMv5_motif 0
paths to the root