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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:DRE_motif
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Accession:SO:0001156 term browser browse the term
Definition:A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW.
Comment:This consensus sequence was identified computationally using the MEME algorithm within core promoter sequences from -60 to +40, with an E value of 1.7e-183. Tends to co-occur with Motif 7. Tends to not occur with DPE motif (SO:0000015) or motif 10.
Synonyms:exact_synonym: DRE motif;   NDM4;   WATCGATW_motif


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Path 1
Term Annotations click to browse term
  SO ontology 0
    sequence_feature 0
      region 0
        biological_region 0
          sequence_motif 0
            nucleotide_motif 0
              DNA_motif 0
                DRE_motif 0
Path 2
Term Annotations click to browse term
  SO ontology 0
    sequence_feature 0
      region 0
        biological_region 0
          gene_group 0
            gene 0
              gene_member_region 0
                regulatory_region 0
                  transcriptional_cis_regulatory_region 0
                    promoter 0
                      eukaryotic_promoter 0
                        RNApol_II_promoter 0
                          DRE_motif 0
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