DA/Slc - Ontology Report - Rat Genome Database

Welcome {{ username}}

Message Center

{{ messageCount }} Messages

Go to Message Center

Watched Genes

{{$index + 1}}. {{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})

Modify Subscription

Unsubscribe

Watched Ontology Terms

{{$index + 1}}. {{ watchedTerm.term }} ({{watchedTerm.accId}})

Modify Subscription

Unsubscribe

{{gene.symbol}}: {{ gene.description }}

Save List to My RGD

Create Name:

Description:

You must be logged in to use this feature

Select categories you would like to watch. Updates to this gene will be sent to {{ username }}

Analyze GeneStrainQTL List

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Your email

Message

Search RGD Grant Resources Citing RGD About Us Contact Us

Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data

OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)

Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease

Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive

Pathways

Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Advanced Search (OLGA)

RAT STRAINS - ANNOTATIONS	{{ watchLinkText }}
The Rat Strain Ontology (RS) is currently being developed at the Rat Genome Database. For more information about this vocabulary or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:	DA/Slc	go back to main search page
Accession:	RS:0000247	browse the term
Synonyms:	related_synonym:	Dark Agouti/Slc; MDC-02-72; NBRP Rat No. 0157; RGD ID: 61111

show annotations for term's descendants Sort by:
Rat (6) Mouse (0) Human (0) Chinchilla (0) Bonobo (0) Dog (0) Squirrel (0) Pig (0) Green Monkey (0) Naked Mole-rat (0) All
QTL (5) Strains (1)

DA/Slc

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Kidney mass QTL 41

RGD

NCBI chr12:1...19,611,090

Proteinuria QTL 17

RGD

NCBI chr 1:156,677,124...218,753,816

Tcas1

Tongue tumor susceptibility QTL 1

IEA

RGD

PMID:9563479

RGD:61091

NCBI chr19:2,316,121...47,316,121

Tcat1

Tongue tumor resistance QTL 1

IEA

RGD

PMID:9563479

RGD:61091

NCBI chr 1:99,267,916...144,267,916

Tspe1

Trichinella spiralis expulsion QTL 1

IEA

RGD

PMID:16465509

RGD:1578305

NCBI chr 9:61,381,434...65,691,299

Related Phenotype Data for Term "DA/Slc" (RS:0000247)

Rat Strains:

DA/Slc

Clinical Measurements:

activated partial thromboplastin time
blood band neutrophil count to total leukocyte count ratio
blood basophil count to total leukocyte count ratio
blood eosinophil count to total leukocyte count ratio
blood hemoglobin level
blood lymphocyte count to total leukocyte count ratio
blood monocyte count to total leukocyte count ratio
blood segmented neutrophil count to total leukocyte count ratio
body temperature
body weight
both adrenal glands weight to body weight ratio
both adrenal glands wet weight
both kidneys wet weight
both kidneys wet weight as percentage of body weight
both testes wet weight
both testes wet weight to body weight ratio
brain weight to body weight ratio
brain wet weight
heart rate
heart weight to body weight ratio
heart wet weight
hematocrit
kidney wet weight
liver weight as percentage of body weight
liver wet weight
lung weight to body weight ratio
lung wet weight
mean corpuscular hemoglobin
mean corpuscular hemoglobin concentration
mean corpuscular volume
non-specified leukocyte count to total leukocyte count ratio
non-tongue squamous cell carcinoma of the head and neck tumor number
number of squamous cell tumors of the tongue with diameter greater than 3 mm
number of squamous cell tumors of the tongue with diameter greater than 5 mm
plasma alanine aminotransferase activity level
plasma albumin level
plasma albumin to plasma total protein ratio
plasma alkaline phosphatase activity level
plasma aspartate aminotransferase activity level
plasma chloride level
plasma creatinine level
plasma glucose level
plasma high density lipoprotein cholesterol level
plasma low density lipoprotein cholesterol level
plasma phosphate level
plasma potassium level
plasma sodium level
plasma total bilirubin level
plasma total cholesterol level
plasma total protein level
plasma triglyceride level
plasma urea nitrogen level
platelet count
post-insult time to onset of moribundity
prothrombin time
red blood cell count
single kidney wet weight to body weight ratio
spleen weight to body weight ratio
spleen wet weight
squamous cell carcinoma of the head and neck tumor number
squamous cell carcinoma of the tongue maximum tumor diameter
squamous cell carcinoma of the tongue tumor number
systolic blood pressure
timed urine volume
timed urine volume to body weight ratio
total plasma calcium level
urine chloride excretion rate to body weight ratio
urine chloride level
urine potassium excretion rate to body weight ratio
urine potassium level
urine sodium excretion rate to body weight ratio
urine sodium level
urine total protein excretion rate
white blood cell count

Experimental Conditions:

0.9% sodium chloride solution
anti-glomerular basement membrane antibody
controlled 4-nitroquinoline N-oxide content drinking water
fasting
specific pathogen-free condition

Measurement Methods:

automated blood electrolyte analysis
automated cell/particle size/count analysis method
automated coagulometer method
automated differential white blood cell count test
automated plasma albumin analysis
automated plasma analysis
automated plasma creatinine analysis
automated plasma protein analysis
automated plasma total protein analysis
automated urine analysis
body weighing method
digital rectal thermometry
ex vivo visual assessment
metabolic cage urine volume measurement method
necropsy
post excision weight measurement
Shimadzu electronic balance post excision weight measurement
tail cuff photoplethysmography
urine protein analysis
whole body digital scale

Term paths to the root

Path 1
Term	Annotations
rat strain	6723
inbred strain	2738
DA	239
DA/Slc	6
Path 2
Term	Annotations
rat strain	6723
HRDP strain	2374
HRDP classic inbred strain	2173
DA	239
DA/Slc	6

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Send us a Message

RAT STRAINS - ANNOTATIONS

Related Phenotype Data for Term "DA/Slc" (RS:0000247)