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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:carnitine biosynthetic pathway
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Accession:PW:0002292 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis of carnitine. It involves the amino acids lysine and methionine and it largely occurs in the kidney and liver.
Synonyms:related_synonym: Carnitine synthesis;   carnitine biosynthetic process



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carnitine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 ISO SMPDB SMP:00465 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 ISO SMPDB SMP:00465 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO SMPDB SMP:00465 NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00465 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon ISO SMPDB SMP:00465 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6097
    classic metabolic pathway 1854
      metabolic pathway of other amino acids 141
        carnitine metabolic pathway 5
          carnitine biosynthetic pathway 5
paths to the root