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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:carnitine metabolic pathway
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Accession:PW:0002291 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of carnitine. Carnitine is derived from lysine and methionine and is important for fatty acid transport into the mitochondrial matrix.
Synonyms:related_synonym: Carnitine metabolism;   carnitine metabolic process


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carnitine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 ISO SMPDB SMP:00465 NCBI chr13:82,038,679...82,055,478
Ensembl chr13:79,505,695...79,540,568 		JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 ISO SMPDB SMP:00465 NCBI chr 3:117,277,226...117,326,383
Ensembl chr 3:96,822,655...96,871,458 		JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO SMPDB SMP:00465 NCBI chr 2:137,713,545...137,756,319
Ensembl chr 2:135,562,683...135,605,468 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00465 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon ISO SMPDB SMP:00465 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1853
      metabolic pathway of other amino acids 142
        carnitine metabolic pathway 5
          carnitine biosynthetic pathway 5
          carnitine degradation pathway 0
paths to the root