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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:prolidase deficiency pathway
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Accession:PW:0002181 term browser browse the term
Definition:A rare autosomal recessive disorder resulting from alterations in collagen metabolism and due to defects in the prolidase PEPD gene. The condition is manifested in skin ulcers and mental retardation.
Synonyms:related_synonym: SMP:00207

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prolidase deficiency pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 ISO SMPDB SMP:00207 NCBI chrNW_004955527:338,593...369,528
Ensembl chrNW_004955527:338,593...372,872 		JBrowse link
G Arg1 arginase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972 		JBrowse link
G Asl argininosuccinate lyase ISO SMPDB SMP:00207 NCBI chrNW_004955456:8,409,767...8,419,915
Ensembl chrNW_004955456:8,411,220...8,416,992 		JBrowse link
G Ass1 argininosuccinate synthase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190 		JBrowse link
G Ckb creatine kinase B ISO SMPDB SMP:00207 NCBI chrNW_004955538:2,379,868...2,380,771 JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246 		JBrowse link
G Dao D-amino acid oxidase ISO SMPDB SMP:00207 NCBI chrNW_004955455:10,095,597...10,127,244
Ensembl chrNW_004955455:10,095,300...10,127,666 		JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955520:3,550,558...3,606,015
Ensembl chrNW_004955520:3,550,558...3,606,697 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO SMPDB SMP:00207 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424 		JBrowse link
G Gatm glycine amidinotransferase ISO SMPDB SMP:00207 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955510:5,987,811...6,021,001 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072 		JBrowse link
G Nos1 nitric oxide synthase 1 ISO SMPDB SMP:00207 NCBI chrNW_004955455:13,797,557...13,978,402
Ensembl chrNW_004955455:13,797,545...13,972,566 		JBrowse link
G Oat ornithine aminotransferase ISO SMPDB SMP:00207 NCBI chrNW_004955477:2,430,146...2,450,135
Ensembl chrNW_004955477:2,429,776...2,450,624 		JBrowse link
G Otc ornithine transcarbamylase ISO SMPDB SMP:00207 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176 		JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 ISO SMPDB SMP:00207 NCBI chrNW_004955414:17,344,512...17,376,564
Ensembl chrNW_004955414:17,344,509...17,376,564 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 ISO SMPDB SMP:00207 NCBI chrNW_004955489:138,600...143,112
Ensembl chrNW_004955489:138,600...143,112 		JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00207 NCBI chrNW_004955411:14,470,479...14,527,895
Ensembl chrNW_004955411:14,470,479...14,527,895 		JBrowse link
G Slc25a15 solute carrier family 25 member 15 ISO SMPDB SMP:00207 NCBI chrNW_004955431:5,673,207...5,691,615
Ensembl chrNW_004955431:5,672,701...5,694,197 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3930
    disease pathway 675
      skin and connective tissue disease pathway 19
        skin disease pathway 19
          genetic skin disease pathway 19
            prolidase deficiency pathway 19
Path 2
Term Annotations click to browse term
  pathway 3930
    disease pathway 675
      nutritional and metabolic disease pathway 546
        metabolic disease pathway 514
          inborn error of metabolism pathway 497
            inborn error of amino acid metabolism pathway 216
              prolidase deficiency pathway 19
paths to the root