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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:organic chemical homeostasis pathway
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Accession:PW:0001691 term browser browse the term
Definition:Those pathways involved in the proper balance of organic chemical levels, uptake and transport, utilization and storage, as demanded by the needs of cells tissues and organs. Disruption of organic chemical homeostasis can have harmful consequences. Collectively they represent a broad class of substances containing carbon.



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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr13:68,816,677...68,828,559
Ensembl chr13:68,816,679...68,828,580
JBrowse link
altered folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chr 7:53,748,585...53,794,777
Ensembl chr 7:53,748,653...53,794,706
JBrowse link
G DHFR dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr 2:89,230,660...89,255,830 JBrowse link
G FOLR1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chr 9:6,753,513...6,760,433
Ensembl chr 9:6,757,040...6,760,402
JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,387
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
G SLC46A1 solute carrier family 46 member 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chr12:44,677,499...44,686,277
Ensembl chr12:44,677,502...44,686,250
JBrowse link
altered folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22353665 RGD:7242562 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,387
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:22353665 RGD:7242562 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22353665 RGD:7242562 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
altered retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144
JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:20212494 RGD:8547536 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681
JBrowse link
G RBP3 retinol binding protein 3 ISO RGD PMID:20212494 RGD:8547536 NCBI chr14:88,491,701...88,503,388
Ensembl chr14:88,490,013...88,504,510
JBrowse link
G RDH12 retinol dehydrogenase 12 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 7:91,481,238...91,493,838
Ensembl chr 7:91,481,272...91,493,809
JBrowse link
G RLBP1 retinaldehyde binding protein 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 7:54,783,965...54,800,008
Ensembl chr 7:54,776,113...54,889,014
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467
JBrowse link
altered visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 8:37,896,460...37,968,935
Ensembl chr 8:37,896,459...37,969,344
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr 6:19,752,734...19,865,830 JBrowse link
G GUCA1B guanylate cyclase activator 1B ISO RGD PMID:20212494 RGD:8547536 NCBI chr 7:37,297,901...37,311,158
Ensembl chr 7:37,297,908...37,310,170
JBrowse link
G PDE6A phosphodiesterase 6A ISO RGD PMID:20212494 RGD:8547536 NCBI chr 2:150,926,652...150,986,050
Ensembl chr 2:150,927,770...150,985,318
JBrowse link
G PDE6B phosphodiesterase 6B ISO RGD PMID:20212494 RGD:8547536 NCBI chr 8:80,378...111,960
Ensembl chr 8:80,378...110,672
JBrowse link
G PDE6G phosphodiesterase 6G ISO RGD PMID:20212494 RGD:8547536 NCBI chr12:1,235,886...1,239,808
Ensembl chr12:1,236,210...1,239,306
JBrowse link
G RHO rhodopsin ISO RGD PMID:20212494 RGD:8547536 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651
JBrowse link
G SAG S-antigen visual arrestin ISO RGD PMID:20212494 RGD:8547536 NCBI chr15:133,704,975...133,741,844
Ensembl chr15:133,705,008...133,741,798
JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXXC1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chr 1:99,934,493...99,940,125
Ensembl chr 1:99,934,497...99,940,130
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,566...69,029,844
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,603,087
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,345,816...36,386,072
JBrowse link
G EBF1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chr16:64,357,999...64,753,188
Ensembl chr16:64,359,001...64,752,210
JBrowse link
G KDM2A lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 2:5,238,690...5,357,799
Ensembl chr 2:5,240,312...5,357,829
JBrowse link
G KDM2B lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,165,950...31,203,091
JBrowse link
G KMT2A lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 9:45,743,566...45,828,559
Ensembl chr 9:45,743,397...45,824,884
JBrowse link
G KMT2C lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chr18:4,993,213...5,279,668
Ensembl chr18:4,993,227...5,278,723
JBrowse link
G MBD1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:99,848,193...99,917,347
Ensembl chr 1:99,900,801...99,917,323
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,735,192...103,752,402
JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chr13:68,816,677...68,828,559
Ensembl chr13:68,816,679...68,828,580
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,738,659
JBrowse link
G NANOG Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chr 5:62,931,642...62,939,086
Ensembl chr 5:62,932,382...62,939,082
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chr  X:57,521,091...57,558,467
Ensembl chr  X:57,521,098...57,558,515
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chr13:68,301,566...68,433,951
Ensembl chr13:68,302,322...68,433,944
JBrowse link
G PRDM14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:65,273,988...65,295,362
Ensembl chr 4:65,271,315...65,295,178
JBrowse link
G SIN3A SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chr 7:58,171,821...58,246,126
Ensembl chr 7:58,176,167...58,245,971
JBrowse link
G SPI1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chr 2:15,227,850...15,245,679
Ensembl chr 2:15,227,881...15,245,677
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,618
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr 8:116,413,253...116,546,976
Ensembl chr 8:116,415,267...116,545,299
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943 RGD:8695944 RGD:9479164 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 2:73,898,061...73,937,727
Ensembl chr 2:73,898,071...73,931,769
JBrowse link
G UHRF2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:215,730,212...215,807,630
Ensembl chr 1:215,730,225...215,807,627
JBrowse link
G ZBTB33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:98,370,137...98,413,686
Ensembl chr  X:98,405,319...98,414,279
JBrowse link
G ZBTB38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chr13:82,053,887...82,195,321
Ensembl chr13:82,064,565...82,195,319
JBrowse link
G ZBTB4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chr12:52,759,912...52,775,725 JBrowse link
G ZFP57 ZFP57 zinc finger protein ISO RGD PMID:23324617 RGD:8695954 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chr 7:53,748,585...53,794,777
Ensembl chr 7:53,748,653...53,794,706
JBrowse link
G AMT aminomethyltransferase ISO RGD PMID:20645850 RGD:7242560 NCBI chr13:31,995,600...32,002,514
Ensembl chr13:31,995,595...32,002,470
JBrowse link
G DHFR dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr 2:89,230,660...89,255,830 JBrowse link
G DLD dihydrolipoamide dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chr 9:107,642,129...107,668,443
Ensembl chr 9:107,642,095...107,673,583
JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chr 2:87,791,827...87,867,189
Ensembl chr 2:87,791,943...87,866,679
JBrowse link
G FOLH1B folate hydrolase 1B ISO RGD PMID:16859665 PMID:20814827 RGD:7242426 RGD:7242559 NCBI chr 9:22,903,997...22,960,648
Ensembl chr 9:22,903,979...22,963,472
JBrowse link
G FOLR1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chr 9:6,753,513...6,760,433
Ensembl chr 9:6,757,040...6,760,402
JBrowse link
G FOLR2 folate receptor 2 (fetal) ISO RGD PMID:22108709 RGD:7242557 NCBI chr 9:6,785,308...6,790,466
Ensembl chr 9:6,785,303...6,790,465
JBrowse link
G FPGS folylpolyglutamate synthase ISO RGD PMID:16859665 RGD:7242559 NCBI chr 1:268,281,298...268,309,397
Ensembl chr 1:268,287,765...268,309,398
JBrowse link
G GCSH glycine cleavage system protein H ISO RGD PMID:20645850 RGD:7242560 NCBI chr 6:7,171,186...7,184,732
Ensembl chr 6:7,171,192...7,184,729
JBrowse link
G GGH gamma-glutamyl hydrolase ISO RGD PMID:16859665 RGD:7242559 NCBI chr 4:70,996,730...71,020,513
Ensembl chr 4:70,996,755...71,021,838
JBrowse link
G GLDC glycine decarboxylase ISO RGD PMID:20645850 RGD:7242560 NCBI chr 1:215,608,854...215,715,062
Ensembl chr 1:215,608,849...215,715,059
JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,387
JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO RGD PMID:22108709 RGD:7242557 NCBI chr 1:15,140,929...15,330,265
Ensembl chr 1:15,140,899...15,329,986
JBrowse link
G MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chr 3:68,819,171...68,833,641
Ensembl chr 3:68,818,119...68,833,600
JBrowse link
G MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like ISO RGD PMID:22108709 RGD:7242557 NCBI chr 8:70,179,701...70,288,356
Ensembl chr 8:70,179,658...70,290,047
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
G SARDH sarcosine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chr 1:273,230,357...273,295,170
Ensembl chr 1:273,230,375...273,294,621
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,416,463...60,435,450
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,319
JBrowse link
G SLC19A1 solute carrier family 19 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chr13:207,986,094...208,007,855
Ensembl chr13:207,986,098...208,007,675
JBrowse link
G SLC25A32 solute carrier family 25 member 32 ISO RGD PMID:22332074 RGD:7242561 NCBI chr 4:33,704,810...33,727,796
Ensembl chr 4:33,704,771...33,730,130
JBrowse link
G SLC46A1 solute carrier family 46 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chr12:44,677,499...44,686,277
Ensembl chr12:44,677,502...44,686,250
JBrowse link
folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:14729668 RGD:1547843 NCBI chr 7:53,748,585...53,794,777
Ensembl chr 7:53,748,653...53,794,706
JBrowse link
G ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:9332377 PMID:22332074 RGD:70804 RGD:7242561 NCBI chr15:117,617,584...117,649,063
Ensembl chr15:117,617,502...117,649,107
JBrowse link
G DHFR dihydrofolate reductase ISO RGD PMID:11502523 PMID:22332074 RGD:1298877 RGD:7242561 NCBI chr 2:89,230,660...89,255,830 JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chr 2:87,791,827...87,867,189
Ensembl chr 2:87,791,943...87,866,679
JBrowse link
G FOLH1B folate hydrolase 1B ISO RGD PMID:9501243 RGD:728645 NCBI chr 9:22,903,997...22,960,648
Ensembl chr 9:22,903,979...22,963,472
JBrowse link
G GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 PMID:22332074 RGD:1547842 RGD:7242561 NCBI chr13:197,130,898...197,158,797
Ensembl chr13:197,130,904...197,161,891
JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:8278367 RGD:1545057 NCBI chr 7:38,038,359...38,041,218
Ensembl chr 7:38,038,358...38,041,217
JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:2186031 PMID:22332074 RGD:1299513 RGD:7242561 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,387
JBrowse link
G MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:9454603 RGD:1540378 NCBI chr 3:68,819,171...68,833,641
Ensembl chr 3:68,818,119...68,833,600
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:11933257 PMID:22332074 RGD:1535021 RGD:7242561 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 PMID:20814827 RGD:1359026 RGD:7242426 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,416,463...60,435,450
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,319
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:9894005 PMID:22332074 RGD:1545055 RGD:7242561 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,642,381...105,660,578
JBrowse link
folate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 ISO SMPDB
RGD
PMID:14729668 RGD:1547843 SMP:00053 NCBI chr 7:53,748,585...53,794,777
Ensembl chr 7:53,748,653...53,794,706
JBrowse link
G DHFR dihydrofolate reductase ISO SMPDB
RGD
PMID:11502523 RGD:1298877 SMP:00053 NCBI chr 2:89,230,660...89,255,830 JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chr 2:87,791,827...87,867,189
Ensembl chr 2:87,791,943...87,866,679
JBrowse link
G FOLH1B folate hydrolase 1B ISO RGD PMID:9816319 RGD:151347637 NCBI chr 9:22,903,997...22,960,648
Ensembl chr 9:22,903,979...22,963,472
JBrowse link
G FOLR2 folate receptor 2 (fetal) ISO RGD PMID:8445646 RGD:1540379 NCBI chr 9:6,785,308...6,790,466
Ensembl chr 9:6,785,303...6,790,465
JBrowse link
G FPGS folylpolyglutamate synthase ISO SMPDB SMP:00053 NCBI chr 1:268,281,298...268,309,397
Ensembl chr 1:268,287,765...268,309,398
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase ISO SMPDB SMP:00053
G GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 RGD:1547842 NCBI chr13:197,130,898...197,158,797
Ensembl chr13:197,130,904...197,161,891
JBrowse link
G GGH gamma-glutamyl hydrolase ISO SMPDB SMP:00053 NCBI chr 4:70,996,730...71,020,513
Ensembl chr 4:70,996,755...71,021,838
JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:15347642 RGD:1359070 NCBI chr 7:38,038,359...38,041,218
Ensembl chr 7:38,038,358...38,041,217
JBrowse link
G LOC102167410 5-formyltetrahydrofolate cyclo-ligase ISO SMPDB SMP:00053 NCBI chr 7:48,717,518...48,873,492
Ensembl chr 7:48,717,851...48,873,455
JBrowse link
G MTFMT mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00053 NCBI chr 1:106,970,620...107,001,563
Ensembl chr 1:106,970,640...107,001,564
JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO SMPDB
RGD
PMID:2186031 RGD:1299513 SMP:00053 NCBI chr 7:88,471,317...88,533,690
Ensembl chr 7:88,471,414...88,537,387
JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO SMPDB SMP:00053 NCBI chr 1:15,140,929...15,330,265
Ensembl chr 1:15,140,899...15,329,986
JBrowse link
G MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO SMPDB
RGD
PMID:9454603 RGD:1540378 SMP:00053 NCBI chr 3:68,819,171...68,833,641
Ensembl chr 3:68,818,119...68,833,600
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO SMPDB
RGD
PMID:11933257 RGD:1535021 SMP:00053 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 RGD:1359026 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 RGD:1359037 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO RGD PMID:15671219 RGD:1359815 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,416,463...60,435,450
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO RGD PMID:15671219 RGD:1359815 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,319
JBrowse link
G SLC19A1 solute carrier family 19 member 1 ISO RGD PMID:11600421 RGD:735239 NCBI chr13:207,986,094...208,007,855
Ensembl chr13:207,986,098...208,007,675
JBrowse link
G SLC46A1 solute carrier family 46 member 1 ISO SMPDB SMP:00053 NCBI chr12:44,677,499...44,686,277
Ensembl chr12:44,677,502...44,686,250
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:9894005 RGD:1545055 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,642,381...105,660,578
JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEBP2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chr 5:53,617,362...53,691,487
Ensembl chr 5:53,617,358...53,691,509
JBrowse link
G APLF aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chr 3:73,752,115...73,831,158
Ensembl chr 3:73,752,118...73,831,035
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,415...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,679
JBrowse link
G ASH1L ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:94,297,532...94,484,994
Ensembl chr 4:94,297,616...94,484,990
JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr15:48,386,426...48,417,560
Ensembl chr15:48,386,425...48,417,547
JBrowse link
G BAP1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:34,544,570...34,553,538
Ensembl chr13:34,544,581...34,553,483
JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr12:3,747,276...3,755,214
Ensembl chr12:3,747,279...3,755,215
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:52,586,089...52,596,154
Ensembl chr10:52,586,509...52,596,564
JBrowse link
G BPTF bromodomain PHD finger transcription factor ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr12:14,112,943...14,254,810
Ensembl chr12:14,112,718...14,254,790
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G BRD1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 5:774,307...808,016
Ensembl chr 5:770,654...808,006
JBrowse link
G BRD2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,152,043...25,162,578
JBrowse link
G BRD4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,989...62,345,362
JBrowse link
G BRD7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 6:34,478,008...34,519,622
Ensembl chr 6:34,478,012...34,519,663
JBrowse link
G BRDT bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chr 4:125,004,897...125,062,208
Ensembl chr 4:125,004,494...125,060,392
JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit ISO RGD PMID:23642229 RGD:9479074
G CARM1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 2:69,602,121...69,644,862
Ensembl chr 2:69,602,136...69,644,854
JBrowse link
G CBX2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr12:2,570,841...2,580,336
Ensembl chr12:2,570,851...2,580,337
JBrowse link
G CBX4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr12:2,520,913...2,527,245
Ensembl chr12:2,521,027...2,527,241
JBrowse link
G CBX5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 5:19,446,083...19,484,527
Ensembl chr 5:19,446,086...19,484,463
JBrowse link
G CBX6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 5:9,180,559...9,191,414
Ensembl chr 5:9,180,684...9,188,620
JBrowse link
G CBX7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 5:9,070,312...9,090,467
Ensembl chr 5:9,070,353...9,087,634
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr12:2,562,419...2,565,035
Ensembl chr12:2,562,374...2,565,780
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,709...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,149...200,072,556
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,119
JBrowse link
G CREBBP CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959 RGD:9479075 NCBI chr 3:38,388,366...38,530,243
Ensembl chr 3:38,388,547...38,530,224
JBrowse link
G CXXC1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:99,934,493...99,940,125
Ensembl chr 1:99,934,497...99,940,130
JBrowse link
G DAXX death domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,856...29,681,110
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,965
JBrowse link
G DPF3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:95,974,422...96,254,354
Ensembl chr 7:95,982,462...96,254,318
JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:107,520,641...107,533,504
Ensembl chr 3:107,520,642...107,533,496
JBrowse link
G EHMT1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632
G EHMT2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632 RGD:9479074 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,993,478
JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,385,015...109,450,941
JBrowse link
G H2AX H2A.X variant histone ISO RGD PMID:24614311 RGD:9075965 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084
JBrowse link
G H2AZ1 H2A.Z variant histone 1 ISO RGD PMID:24696452 RGD:9074213 NCBI chr 8:120,563,752...120,566,023
Ensembl chr 8:120,563,752...120,566,177
JBrowse link
G H3-3A H3.3 histone A ISO RGD PMID:24614311 RGD:9075965 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,923,077...13,948,484
JBrowse link
G H3-3B H3.3 histone B ISO RGD PMID:24614311 RGD:9075965 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G HAT1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,207...78,079,608
JBrowse link
G HCFC1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr  X:124,673,125...124,694,846
Ensembl chr  X:124,673,128...124,694,152
JBrowse link
G HDAC1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,411
JBrowse link
G HDAC10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,808...445,334
JBrowse link
G HDAC11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chr13:70,860,650...70,879,863
Ensembl chr13:70,860,658...70,879,856
JBrowse link
G HDAC2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
JBrowse link
G HDAC3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 2:143,273,188...143,287,421
Ensembl chr 2:143,273,192...143,287,399
JBrowse link
G HDAC4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr15:138,378,237...138,657,266
Ensembl chr15:138,381,635...138,614,301
JBrowse link
G HDAC5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:19,077,910...19,119,463
Ensembl chr12:19,078,005...19,121,154
JBrowse link
G HDAC6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,964...42,941,887
JBrowse link
G HDAC7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:78,150,554...78,186,051
Ensembl chr 5:78,150,561...78,186,072
JBrowse link
G HDAC8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:58,210,182...58,450,681
Ensembl chr  X:58,210,192...58,450,573
JBrowse link
G HDAC9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:87,164,400...88,192,803
Ensembl chr 9:87,449,359...88,186,961
JBrowse link
G HIRA histone cell cycle regulator ISO RGD PMID:23288364 RGD:9068945 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,409
JBrowse link
G HJURP Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,578...134,123,140
JBrowse link
G ING2 inhibitor of growth family member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr15:44,917,595...44,925,900
Ensembl chr15:44,918,066...44,925,867
JBrowse link
G JMJD1C jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:66,640,845...66,966,911
Ensembl chr14:66,640,849...66,920,324
JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959 RGD:9479074 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,497...20,647,461
JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chr13:6,985,151...7,099,771
Ensembl chr13:6,985,235...7,100,345
JBrowse link
G KAT5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 2:6,560,544...6,572,461
Ensembl chr 2:6,560,513...6,572,466
JBrowse link
G KAT6A lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:11,002,818...11,109,974 JBrowse link
G KAT6B lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,404,136...77,597,673
JBrowse link
G KAT7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:25,970,966...26,005,006
Ensembl chr12:25,970,962...26,008,302
JBrowse link
G KAT8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:17,362,326...17,373,110
Ensembl chr 3:17,362,267...17,373,110
JBrowse link
G KDM1A lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 6:80,903,407...80,971,875
Ensembl chr 6:80,903,424...80,971,873
JBrowse link
G KDM1B lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:13,846,283...13,902,912
Ensembl chr 7:13,845,942...13,901,255
JBrowse link
G KDM2A lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:5,238,690...5,357,799
Ensembl chr 2:5,240,312...5,357,829
JBrowse link
G KDM2B lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,165,950...31,203,091
JBrowse link
G KDM3A lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:58,300,109...58,355,000
Ensembl chr 3:58,302,949...58,354,945
JBrowse link
G KDM3B lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:140,346,145...140,418,556
Ensembl chr 2:140,346,223...140,418,527
JBrowse link
G KDM4A lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632 RGD:9479074 RGD:9479148 NCBI chr 6:167,597,954...167,642,381
Ensembl chr 6:167,597,956...167,642,333
JBrowse link
G KDM4B lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:73,746,379...73,889,881
Ensembl chr 2:73,747,669...73,889,866
JBrowse link
G KDM4C lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,419...215,507,800
JBrowse link
G KDM5A lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:67,628,791...67,716,143
Ensembl chr 5:67,629,380...67,715,905
JBrowse link
G KDM5B lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:24,739,115...24,831,537
Ensembl chr10:24,736,838...24,831,447
JBrowse link
G KDM5C lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:45,968,812...46,003,215
Ensembl chr  X:45,968,814...46,003,215
JBrowse link
G KDM6A lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr  X:39,953,764...40,154,197
Ensembl chr  X:39,953,814...40,154,029
JBrowse link
G KDM6B lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:53,087,072...53,108,949
Ensembl chr12:53,098,964...53,108,214
JBrowse link
G KDM7A lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:9,581,468...9,664,750
Ensembl chr18:9,581,384...9,664,748
JBrowse link
G KDM8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:19,653,396...19,676,207
Ensembl chr 3:19,653,402...19,676,148
JBrowse link
G KMT2A lysine methyltransferase 2A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 9:45,743,566...45,828,559
Ensembl chr 9:45,743,397...45,824,884
JBrowse link
G KMT2B lysine methyltransferase 2B ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 6:45,146,863...45,166,854
Ensembl chr 6:45,147,566...45,166,852
JBrowse link
G KMT2C lysine methyltransferase 2C ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr18:4,993,213...5,279,668
Ensembl chr18:4,993,227...5,278,723
JBrowse link
G KMT2D lysine methyltransferase 2D ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 5:15,049,827...15,091,622 JBrowse link
G KMT2E lysine methyltransferase 2E (inactive) ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:104,876,301...105,007,161
Ensembl chr 9:104,911,821...105,007,084
JBrowse link
G KMT5A lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:29,523,102...29,543,522
Ensembl chr14:29,523,105...29,543,493
JBrowse link
G KMT5B lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:4,710,510...4,768,237
Ensembl chr 2:4,711,023...4,765,979
JBrowse link
G KMT5C lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 6:59,517,058...59,524,551
Ensembl chr 6:59,517,098...59,524,550
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr17:46,135,567...46,176,967
Ensembl chr17:46,136,013...46,173,944
JBrowse link
G LBR lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chr10:13,389,896...13,416,831
Ensembl chr10:13,386,946...13,416,759
JBrowse link
G LOC100627380 lysine-specific demethylase 4D-like ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:27,083,348...27,085,693 JBrowse link
G LOC110257883 lysine-specific demethylase 5D-like ISO RGD PMID:23200123 RGD:7242632 NCBI chr  Y:39,582,253...39,631,823
Ensembl chr  Y:39,582,815...39,631,815
JBrowse link
G MACROH2A1 macroH2A.1 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886
JBrowse link
G MACROH2A2 macroH2A.2 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,229
JBrowse link
G MCPH1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,551...37,673,633
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:23,229,508...23,247,739
Ensembl chr 7:23,229,510...23,245,575
JBrowse link
G MEN1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 2:7,358,130...7,364,952
Ensembl chr 2:7,358,218...7,364,952
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 6:153,755,209...153,798,412
Ensembl chr 6:153,756,182...153,795,535
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,052...39,363,711
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,383
JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chr17:38,114,284...38,221,904
Ensembl chr17:38,114,291...38,221,901
JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:80,649,882...80,810,934
Ensembl chr 2:80,654,379...80,809,059
JBrowse link
G NSD3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr15:48,119,132...48,245,673
Ensembl chr15:48,136,363...48,241,815
JBrowse link
G ORC1 origin recognition complex subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:159,819,302...159,852,306
Ensembl chr 6:159,819,339...159,852,305
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:18,052,679...18,056,920
Ensembl chr 3:18,052,935...18,056,837
JBrowse link
G PAXIP1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr18:3,066,853...3,111,239
Ensembl chr18:3,066,848...3,111,240
JBrowse link
G PBRM1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,726...34,820,952
JBrowse link
G PCGF1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 3:68,540,674...68,543,271 JBrowse link
G PCGF2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr12:23,362,631...23,375,779
Ensembl chr12:23,362,654...23,375,775
JBrowse link
G PCGF3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 8:140,435...189,796
Ensembl chr 8:140,446...182,261
JBrowse link
G PCGF5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr14:102,827,140...102,961,862
Ensembl chr14:102,636,838...102,961,860
JBrowse link
G PCGF6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr14:114,062,457...114,287,458
Ensembl chr14:114,249,820...114,287,434
JBrowse link
G PHC1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 5:62,557,774...62,580,640
Ensembl chr 5:62,557,776...62,580,651
JBrowse link
G PHC2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 6:89,574,030...89,685,275
Ensembl chr 6:89,574,035...89,685,272
JBrowse link
G PHC3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr13:108,791,675...108,883,620
Ensembl chr13:108,776,220...108,883,572
JBrowse link
G PHF1 PHD finger protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 7:29,714,295...29,719,996
Ensembl chr 7:29,714,293...29,719,987
JBrowse link
G PHF19 PHD finger protein 19 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 1:260,899,462...260,919,776
Ensembl chr 1:260,899,452...260,920,110
JBrowse link
G PHF2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,636...43,078,808
JBrowse link
G PHF8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:46,648,164...46,761,192
Ensembl chr  X:46,648,168...46,759,239
JBrowse link
G PRDM16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 6:64,704,181...65,012,580
Ensembl chr 6:64,704,920...65,012,570
JBrowse link
G PRDM2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 6:73,135,872...73,240,271
Ensembl chr 6:73,118,177...73,239,423
JBrowse link
G PRDM6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:126,605,416...126,712,463
Ensembl chr 2:126,606,171...126,712,494
JBrowse link
G PRDM8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:137,604,805...137,611,389
Ensembl chr 8:137,605,600...137,612,651
JBrowse link
G PRMT1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 6:54,718,845...54,730,411
Ensembl chr 6:54,714,157...54,732,574
JBrowse link
G PRMT2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 7:76,110,956...76,119,619
Ensembl chr 7:76,110,951...76,124,989
JBrowse link
G PRMT6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 4:112,698,865...112,710,305
Ensembl chr 4:112,701,088...112,703,581
JBrowse link
G PRMT7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 6:28,883,148...28,945,904
Ensembl chr 6:28,883,646...28,945,905
JBrowse link
G RAG2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 2:24,547,605...24,553,944
Ensembl chr 2:24,547,644...24,558,403
JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 9:65,783,725...65,821,681
Ensembl chr 9:65,783,736...65,821,650
JBrowse link
G RING1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 7:25,251,507...25,255,526
Ensembl chr 7:25,251,486...25,255,522
JBrowse link
G RNF2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 9:126,172,637...126,284,567
Ensembl chr 9:126,172,301...126,287,603
JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 3:17,463,768...17,490,397
Ensembl chr 3:17,463,775...17,488,594
JBrowse link
G SETD1B SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr14:30,862,155...30,885,592
Ensembl chr14:30,862,158...30,885,260
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,719...29,996,359
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:87,478,266...87,527,190
Ensembl chr 8:87,478,173...87,527,188
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,375...98,293,097
JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 3:18,354,798...18,387,930
Ensembl chr 3:18,354,799...18,387,856
JBrowse link
G SIRT1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,167...71,123,297
JBrowse link
G SIRT2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:47,682,427...47,703,408
Ensembl chr 6:47,682,429...47,703,384
JBrowse link
G SIRT3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 2:38,465...55,074
Ensembl chr 2:38,464...55,101
JBrowse link
G SIRT4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr14:40,290,288...40,303,887
Ensembl chr14:40,290,288...40,303,879
JBrowse link
G SIRT5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:9,951,024...9,968,004
Ensembl chr 7:9,951,030...9,968,448
JBrowse link
G SIRT6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,493...74,577,772
JBrowse link
G SIRT7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,078,166...1,084,119
JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 1:219,624,773...219,815,438
Ensembl chr 1:219,573,535...219,815,421
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295
JBrowse link
G SMYD1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:57,866,078...57,918,576
Ensembl chr 3:57,867,250...57,918,568
JBrowse link
G SMYD2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:129,263,524...129,316,226
Ensembl chr 9:129,263,526...129,316,349
JBrowse link
G SMYD3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,189...19,019,642
JBrowse link
G SPIN1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chr14:227,219...291,420
Ensembl chr14:227,209...294,826
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,227
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,811,461
JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:46,874,606...46,900,058
Ensembl chr10:46,873,126...46,900,040
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr  X:57,382,211...57,466,700
Ensembl chr  X:57,382,354...57,466,697
JBrowse link
G TDRD3 tudor domain containing 3 ISO RGD PMID:23211769 PMID:24035451 RGD:9479148 RGD:9479163 NCBI chr11:33,257,556...33,440,131
Ensembl chr11:33,258,063...33,440,123
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,959,213...128,028,712
JBrowse link
G TRIM24 tripartite motif containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chr18:11,055,211...11,151,755
Ensembl chr18:11,055,213...11,151,404
JBrowse link
G TRIM33 tripartite motif containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr 4:106,058,197...106,195,145
Ensembl chr 4:106,058,109...106,191,800
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 2:73,898,061...73,937,727
Ensembl chr 2:73,898,071...73,931,769
JBrowse link
G USP12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chr11:4,612,274...4,689,791
Ensembl chr11:4,612,277...4,689,432
JBrowse link
G USP16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:192,376,850...192,406,474
Ensembl chr13:192,376,881...192,406,468
JBrowse link
G USP21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 4:89,289,056...89,295,232
Ensembl chr 4:89,289,070...89,295,237
JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chr12:61,273,939...61,308,381
Ensembl chr12:61,271,641...61,308,270
JBrowse link
G USP3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 1:108,414,358...108,515,611
Ensembl chr 1:108,415,703...108,515,447
JBrowse link
G USP44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 5:87,864,410...87,890,913
Ensembl chr 5:87,875,851...87,889,680
JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053 RGD:9479074 NCBI chr 1:273,560,274...273,577,827
Ensembl chr 1:273,560,283...273,578,063
JBrowse link
G WDR82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chr13:34,387,799...34,412,190
Ensembl chr13:34,387,808...34,412,140
JBrowse link
G YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chr 4:35,975,513...36,009,909
Ensembl chr 4:35,975,508...36,009,887
JBrowse link
homocysteine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO RGD PMID:11741948 PMID:20814827 RGD:7242426 RGD:730275 NCBI chr17:37,726,084...37,744,378
Ensembl chr17:37,726,084...37,744,461
JBrowse link
G AS3MT arsenite methyltransferase ISO RGD PMID:11790780 RGD:625365 NCBI chr14:113,844,107...113,867,880
Ensembl chr14:113,847,859...113,869,507
JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 2:69,602,121...69,644,862
Ensembl chr 2:69,602,136...69,644,854
JBrowse link
G COMT catechol-O-methyltransferase ISO RGD PMID:12584150 RGD:1359089 NCBI chr14:51,384,729...51,403,997
Ensembl chr14:51,385,738...51,403,998
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:12473678 RGD:1359078 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,566...69,029,844
JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chr 2:77,076,566...77,079,751
Ensembl chr 2:77,076,566...77,079,759
JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:15347642 RGD:1359070 NCBI chr 7:38,038,359...38,041,218
Ensembl chr 7:38,038,358...38,041,217
JBrowse link
G HNMT histamine N-methyltransferase ISO RGD PMID:11566133 RGD:1359041 NCBI chr15:13,733,412...13,768,106
Ensembl chr15:13,732,680...13,768,199
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G NNMT nicotinamide N-methyltransferase ISO RGD PMID:15922112 RGD:1359084 NCBI chr 9:41,871,072...41,882,415
Ensembl chr 9:41,870,980...41,882,756
JBrowse link
G PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chr 1:16,202,859...16,249,879
Ensembl chr 1:16,198,223...16,249,531
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chr12:60,880,367...60,919,279 JBrowse link
G PNMT phenylethanolamine N-methyltransferase ISO RGD PMID:12438084 RGD:1359087 NCBI chr12:22,648,396...22,651,520
Ensembl chr12:22,648,398...22,649,999
JBrowse link
G PRMT1 protein arginine methyltransferase 1 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 6:54,718,845...54,730,411
Ensembl chr 6:54,714,157...54,732,574
JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 7:76,110,956...76,119,619
Ensembl chr 7:76,110,951...76,124,989
JBrowse link
G PRMT6 protein arginine methyltransferase 6 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 4:112,698,865...112,710,305
Ensembl chr 4:112,701,088...112,703,581
JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:11472630 RGD:1359071 NCBI chr 6:96,338,283...96,362,814
Ensembl chr 6:96,338,288...96,360,169
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:11959841 RGD:1359072 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,375...98,293,097
JBrowse link
methionine cycle/metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO SMPDB
RGD
PMID:2292587 PMID:11741948 PMID:23073625 RGD:7242425 RGD:7242932 RGD:730275 SMP:00033 NCBI chr17:37,726,084...37,744,378
Ensembl chr17:37,726,084...37,744,461
JBrowse link
G AMD1 adenosylmethionine decarboxylase 1 ISO SMPDB
RGD
PMID:2292587 PMID:23073625 RGD:7242425 RGD:7242932 SMP:00033 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G AS3MT arsenite methyltransferase ISO RGD PMID:11790780 RGD:625365 NCBI chr14:113,844,107...113,867,880
Ensembl chr14:113,847,859...113,869,507
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase ISO SMPDB
RGD
PMID:15845641 PMID:23073625 RGD:1359026 RGD:7242425 SMP:00033 NCBI chr 2:87,911,093...87,935,252
Ensembl chr 2:87,910,603...87,935,252
JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chr 2:69,602,121...69,644,862
Ensembl chr 2:69,602,136...69,644,854
JBrowse link
G CBS cystathionine beta-synthase ISO SMPDB SMP:00033 NCBI chr13:206,205,942...206,231,363
Ensembl chr13:206,205,946...206,230,248
JBrowse link
G CHDH choline dehydrogenase ISO SMPDB SMP:00033 NCBI chr13:35,910,688...35,950,438
Ensembl chr13:35,910,698...35,948,683
JBrowse link
G COMT catechol-O-methyltransferase ISO RGD PMID:12584150 RGD:1359089 NCBI chr14:51,384,729...51,403,997
Ensembl chr14:51,385,738...51,403,998
JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB SMP:00033 NCBI chr 6:142,454,922...142,486,352
Ensembl chr 6:142,454,914...142,486,367
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO SMPDB
RGD
PMID:12473678 PMID:22342103 RGD:1359078 RGD:7242551 SMP:00033 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,566...69,029,844
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha ISO RGD PMID:22342103 RGD:7242551 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,603,087
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO RGD PMID:22342103 RGD:7242551 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,345,816...36,386,072
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase ISO RGD PMID:12628190 PMID:22194015 RGD:1359080 RGD:7242554 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,965
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:22194015 RGD:7242554 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,385,015...109,450,941
JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chr 2:77,076,566...77,079,751
Ensembl chr 2:77,076,566...77,079,759
JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:15347642 PMID:22342103 PMID:23073625 RGD:1359070 RGD:7242425 RGD:7242551 NCBI chr 7:38,038,359...38,041,218
Ensembl chr 7:38,038,358...38,041,217
JBrowse link
G HNMT histamine N-methyltransferase ISO RGD PMID:11566133 RGD:1359041 NCBI chr15:13,733,412...13,768,106
Ensembl chr15:13,732,680...13,768,199
JBrowse link
G IL4I1 interleukin 4 induced 1 ISO SMPDB SMP:00033 NCBI chr 6:54,906,401...54,945,840
Ensembl chr 6:54,906,406...54,916,081
JBrowse link
G KMT5A lysine methyltransferase 5A ISO RGD PMID:22194015 RGD:7242554 NCBI chr14:29,523,102...29,543,522
Ensembl chr14:29,523,105...29,543,493
JBrowse link
G LOC110258194 acetylserotonin O-methyltransferase-like ISO RGD PMID:12198599 RGD:1359073
G MARS1 methionyl-tRNA synthetase 1 ISO SMPDB SMP:00033 NCBI chr 5:22,752,405...22,785,509
Ensembl chr 5:22,752,374...22,785,501
JBrowse link
G MAT1A methionine adenosyltransferase 1A ISO RGD PMID:2292587 PMID:9202427 PMID:23073625 RGD:1359039 RGD:7242425 RGD:7242932 NCBI chr14:82,109,405...82,126,487
Ensembl chr14:82,107,390...82,127,049
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB
RGD
PMID:11099469 PMID:23073625 RGD:1359040 RGD:7242425 SMP:00033 NCBI chr 3:59,220,203...59,225,097
Ensembl chr 3:59,218,688...59,225,249
JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB
RGD
PMID:23073625 RGD:7242425 SMP:00033 NCBI chr16:60,255,541...60,274,228
Ensembl chr16:60,255,358...60,274,135
JBrowse link
G MRM2 mitochondrial rRNA methyltransferase 2 ISO RGD PMID:11827451 RGD:1359074 NCBI chr 3:1,560,161...1,567,351
Ensembl chr 3:1,560,167...1,567,379
JBrowse link
G MSRB2 methionine sulfoxide reductase B2 ISO SMPDB SMP:00033 NCBI chr10:51,888,828...51,910,725
Ensembl chr10:51,889,208...51,910,392
JBrowse link
G MSRB3 methionine sulfoxide reductase B3 ISO SMPDB SMP:00033 NCBI chr 5:29,695,824...29,863,601
Ensembl chr 5:29,695,640...29,863,599
JBrowse link
G MTAP methylthioadenosine phosphorylase ISO SMPDB
RGD
PMID:2292587 RGD:7242932 SMP:00033 NCBI chr 1:200,882,954...200,934,389
Ensembl chr 1:200,882,956...200,934,445
JBrowse link
G MTFMT mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00033 NCBI chr 1:106,970,620...107,001,563
Ensembl chr 1:106,970,640...107,001,564
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO SMPDB
RGD
PMID:11933257 RGD:1535021 SMP:00033 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB
RGD
PMID:15845641 PMID:20814827 PMID:23073625 RGD:1359026 RGD:7242425 RGD:7242426 SMP:00033 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 PMID:20814827 RGD:1359037 RGD:7242426 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
G NNMT nicotinamide N-methyltransferase ISO RGD PMID:15922112 RGD:1359084 NCBI chr 9:41,871,072...41,882,415
Ensembl chr 9:41,870,980...41,882,756
JBrowse link
G PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chr 1:16,202,859...16,249,879
Ensembl chr 1:16,198,223...16,249,531
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chr12:60,880,367...60,919,279 JBrowse link
G PNMT phenylethanolamine N-methyltransferase ISO RGD PMID:12438084 RGD:1359087 NCBI chr12:22,648,396...22,651,520
Ensembl chr12:22,648,398...22,649,999
JBrowse link
G PRMT1 protein arginine methyltransferase 1 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chr 6:54,718,845...54,730,411
Ensembl chr 6:54,714,157...54,732,574
JBrowse link
G PRMT2 protein arginine methyltransferase 2 ISO RGD PMID:21074527 RGD:7242552
G PRMT3 protein arginine methyltransferase 3 ISO RGD PMID:21074527 RGD:7242552 NCBI chr 2:38,884,311...39,032,944
Ensembl chr 2:38,884,362...39,032,996
JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chr 7:76,110,956...76,119,619
Ensembl chr 7:76,110,951...76,124,989
JBrowse link
G PRMT6 protein arginine methyltransferase 6 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chr 4:112,698,865...112,710,305
Ensembl chr 4:112,701,088...112,703,581
JBrowse link
G PRMT7 protein arginine methyltransferase 7 ISO RGD PMID:21074527 RGD:7242552 NCBI chr 6:28,883,148...28,945,904
Ensembl chr 6:28,883,646...28,945,905
JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:11472630 RGD:1359071 NCBI chr 6:96,338,283...96,362,814
Ensembl chr 6:96,338,288...96,360,169
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chr 8:87,478,266...87,527,190
Ensembl chr 8:87,478,173...87,527,188
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:11959841 RGD:1359072 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,375...98,293,097
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00033 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,416,463...60,435,450
JBrowse link
G SMS spermine synthase ISO RGD PMID:23073625 RGD:7242425 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,256...18,169,390
JBrowse link
G SMYD2 SET and MYND domain containing 2 ISO RGD PMID:22194015 RGD:7242554 NCBI chr 9:129,263,524...129,316,226
Ensembl chr 9:129,263,526...129,316,349
JBrowse link
G SRM spermidine synthase ISO SMPDB
RGD
PMID:23073625 RGD:7242425 SMP:00033 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,246,876...71,253,508
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,811,461
JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chr10:46,874,606...46,900,058
Ensembl chr10:46,873,126...46,900,040
JBrowse link
polyamine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 PMID:13678416 RGD:1578320 RGD:7244193 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G AZIN1 antizyme inhibitor 1 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 4:34,221,368...34,257,261
Ensembl chr 4:34,234,679...34,257,134
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 2:76,293,142...76,296,626
Ensembl chr 2:76,293,150...76,296,620
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 1:107,325,225...107,338,475
Ensembl chr 1:107,325,191...107,339,309
JBrowse link
G OAZ3 ornithine decarboxylase antizyme 3 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 4:97,439,993...97,448,493
Ensembl chr 4:97,439,993...97,448,493
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:10430362 PMID:13678416 RGD:1578320 RGD:7244193 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,087,242...126,096,051
JBrowse link
G PAOX polyamine oxidase ISO RGD PMID:13678416 PMID:15541750 RGD:7244190 RGD:7244193 NCBI chr14:141,360,509...141,369,642
Ensembl chr14:141,360,608...141,369,641
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:13678416 PMID:15541750 RGD:7244190 RGD:7244193 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,906...19,910,974
JBrowse link
G SMOX spermine oxidase ISO RGD PMID:13678416 PMID:15541750 RGD:7244190 RGD:7244193 NCBI chr17:31,552,927...31,592,007
Ensembl chr17:31,548,636...31,591,975
JBrowse link
G SMS spermine synthase ISO RGD PMID:13678416 RGD:7244193 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,256...18,169,390
JBrowse link
G SRM spermidine synthase ISO RGD PMID:13678416 RGD:7244193 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,246,876...71,253,508
JBrowse link
putrescine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,087,242...126,096,051
JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,637...71,881,820
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 PMID:20814827 RGD:1359026 RGD:7242426 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 PMID:20814827 RGD:1359037 RGD:7242426 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,228...74,270,783
JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO SMPDB SMP:00123 NCBI chr17:37,726,084...37,744,378
Ensembl chr17:37,726,084...37,744,461
JBrowse link
G ALDH7A1 aldehyde dehydrogenase 7 family member A1 ISO SMPDB SMP:00123 NCBI chr 2:129,663,226...129,709,728
Ensembl chr 2:129,662,969...129,709,705
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase ISO RGD
SMPDB
PMID:15845641 PMID:20346934 PMID:20814827 RGD:1359026 RGD:7242426 RGD:7242428 SMP:00123 NCBI chr 2:87,911,093...87,935,252
Ensembl chr 2:87,910,603...87,935,252
JBrowse link
G CHDH choline dehydrogenase ISO SMPDB SMP:00123 NCBI chr13:35,910,688...35,950,438
Ensembl chr13:35,910,698...35,948,683
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB SMP:00123 NCBI chr 3:59,220,203...59,225,097
Ensembl chr 3:59,218,688...59,225,249
JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB SMP:00123 NCBI chr16:60,255,541...60,274,228
Ensembl chr16:60,255,358...60,274,135
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB SMP:00123 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,978...54,652,763
JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO SMPDB SMP:00123 NCBI chr12:60,880,367...60,919,279 JBrowse link
retinoic acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511
JBrowse link
G CRABP1 cellular retinoic acid binding protein 1 ISO RGD PMID:21621639 RGD:6484672 NCBI chr 7:47,602,316...47,608,865
Ensembl chr 7:47,602,192...47,608,970
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 PMID:21621639 RGD:6484672 RGD:6771322 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 ISO RGD PMID:21621639 RGD:6484672 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 ISO RGD PMID:21621639 RGD:6484672 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,134...104,559,978
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481
JBrowse link
G FABP5 fatty acid binding protein 5 ISO RGD PMID:21621639 RGD:6484672 NCBI chr 4:55,277,831...55,282,585
Ensembl chr 4:55,275,205...55,282,908
JBrowse link
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434
JBrowse link
G LOC110255234 liver carboxylesterase-like ISO RGD PMID:21621639 RGD:6484672
G LRAT lecithin retinol acyltransferase ISO RGD PMID:21621639 RGD:6484672 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681
JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:15950969 PMID:21621639 RGD:6484672 RGD:6771322 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458
JBrowse link
G RBP4 retinol binding protein 4 ISO RGD PMID:21621639 PMID:21782034 RGD:6484671 RGD:6484672 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765
JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 ISO RGD PMID:21621639 PMID:21782034 RGD:6484671 RGD:6484672 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,011...59,347,266
JBrowse link
G TTR transthyretin ISO RGD PMID:21782034 RGD:6484671 NCBI chr 6:115,496,338...115,503,974
Ensembl chr 6:115,496,326...115,503,977
JBrowse link
retinoic acid signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCOA1 nuclear receptor coactivator 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 3:113,997,214...114,251,080
Ensembl chr 3:113,999,253...114,250,298
JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 4:64,888,029...65,245,757
Ensembl chr 4:64,954,238...65,246,572
JBrowse link
G NCOA3 nuclear receptor coactivator 3 ISO RGD PMID:19471584 RGD:6484676 NCBI chr17:49,528,275...49,660,471
Ensembl chr17:49,528,179...49,663,200
JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr12:59,256,868...59,392,564
Ensembl chr12:59,273,100...59,392,562
JBrowse link
G NCOR2 nuclear receptor corepressor 2 ISO RGD PMID:19471584 RGD:6484676 NCBI chr14:28,642,774...28,819,404
Ensembl chr14:28,624,702...28,819,404
JBrowse link
G NRIP1 nuclear receptor interacting protein 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr13:179,822,731...179,916,226
Ensembl chr13:179,825,281...179,915,177
JBrowse link
G PRAME PRAME nuclear receptor transcriptional regulator ISO RGD PMID:19471584 RGD:6484676 NCBI chr14:48,901,097...48,906,855
Ensembl chr14:48,899,343...48,911,231
JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 ISO RGD PMID:19471584 RGD:6484676 NCBI chr12:15,101,946...15,106,326
Ensembl chr12:15,101,859...15,106,213
JBrowse link
G RARA retinoic acid receptor alpha ISO RGD PMID:17132850 PMID:17320364 PMID:19471584 RGD:6484674 RGD:6484676 RGD:6484731 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673
JBrowse link
G RARB retinoic acid receptor beta ISO RGD PMID:17132850 PMID:17320364 PMID:19471584 RGD:6484674 RGD:6484676 RGD:6484731 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680
JBrowse link
G RARG retinoic acid receptor gamma ISO RGD PMID:17132850 PMID:17320364 PMID:19471584 RGD:6484674 RGD:6484676 RGD:6484731 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624
JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:17132853 PMID:17320364 RGD:6484675 RGD:6484731 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,505...273,797,620
JBrowse link
G RXRB retinoid X receptor beta ISO RGD PMID:17132853 PMID:17320364 RGD:6484675 RGD:6484731 NCBI chr 7:25,236,005...25,242,842
Ensembl chr 7:25,236,007...25,242,875
JBrowse link
G RXRG retinoid X receptor gamma ISO RGD PMID:17132853 PMID:17320364 RGD:6484675 RGD:6484731 NCBI chr 4:85,158,313...85,357,116
Ensembl chr 4:85,308,508...85,357,137
JBrowse link
G TRIM24 tripartite motif containing 24 ISO RGD PMID:19471584 RGD:6484676 NCBI chr18:11,055,211...11,151,755
Ensembl chr18:11,055,213...11,151,404
JBrowse link
retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144
JBrowse link
G LOC494564 medium-wave-sensitive opsin ISO RGD PMID:21704730 RGD:6893536 NCBI chr  X:124,816,014...124,828,225 JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:21447403 RGD:6893650 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681
JBrowse link
G OPN1SW opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr18:19,836,453...19,839,425
Ensembl chr18:19,836,453...19,839,425
JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:21447403 RGD:6893650 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458
JBrowse link
G RBP3 retinol binding protein 3 ISO RGD PMID:21447403 RGD:6893650 NCBI chr14:88,491,701...88,503,388
Ensembl chr14:88,490,013...88,504,510
JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link
G RDH11 retinol dehydrogenase 11 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405
JBrowse link
G RDH12 retinol dehydrogenase 12 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 7:91,481,238...91,493,838
Ensembl chr 7:91,481,272...91,493,809
JBrowse link
G RDH5 retinol dehydrogenase 5 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 5:21,166,869...21,170,913
Ensembl chr 5:21,166,510...21,170,897
JBrowse link
G RDH8 retinol dehydrogenase 8 ISO RGD PMID:21447403 RGD:6893650 NCBI chr 2:68,871,707...68,878,222
Ensembl chr 2:68,871,707...68,877,675
JBrowse link
G RHO rhodopsin ISO RGD PMID:21704730 RGD:6893536 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651
JBrowse link
G RLBP1 retinaldehyde binding protein 1 ISO RGD PMID:20188572 RGD:6903223 NCBI chr 7:54,783,965...54,800,008
Ensembl chr 7:54,776,113...54,889,014
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:21447403 PMID:21785167 RGD:6893650 RGD:6893661 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467
JBrowse link
retinol metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr 1:246,144,277...246,278,492
Ensembl chr 1:246,144,277...246,278,492
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO SMPDB SMP:00074 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO SMPDB
RGD
PMID:12547725 RGD:1576367 SMP:00074 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G AWAT1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00074 NCBI chr  X:56,263,082...56,273,169 JBrowse link
G BCO1 beta-carotene oxygenase 1 ISO SMPDB
RGD
PMID:21569862 PMID:21718801 RGD:6484679 RGD:6903956 SMP:00074 NCBI chr 6:7,008,330...7,054,089
Ensembl chr 6:7,012,332...7,055,305
JBrowse link
G CD36 CD36 molecule ISO RGD PMID:21718801 RGD:6484679 NCBI chr 9:99,685,748...99,782,296
Ensembl chr 9:99,605,181...99,782,105
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 ISO SMPDB SMP:00074 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095
JBrowse link
G CYP2A19 cytochrome P450 family 2 subfamily A member 19 ISO SMPDB SMP:00074 NCBI chr 6:49,056,579...49,064,111
Ensembl chr 6:49,056,578...49,064,107
JBrowse link
G CYP2B6B cytochrome P450 family 2 subfamily B member 6B ISO SMPDB SMP:00074 NCBI chr 6:49,158,175...49,173,872
Ensembl chr 6:49,110,812...49,178,334
JBrowse link
G CYP3A22 cytochrome P450 family 3 subfamily A member 22 ISO SMPDB SMP:00074 NCBI chr 3:6,617,256...6,665,179
Ensembl chr 3:6,615,343...6,822,817
JBrowse link
G CYP3A29 cytochrome P450 family 3 subfamily A member 29 ISO SMPDB SMP:00074 NCBI chr 3:6,738,502...6,778,121
Ensembl chr 3:6,738,486...6,778,944
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00074 NCBI chr 4:452,890...463,665
Ensembl chr 4:452,662...466,684
JBrowse link
G DHRS3 dehydrogenase/reductase 3 ISO SMPDB SMP:00074 NCBI chr 6:72,556,234...72,599,233
Ensembl chr 6:72,556,236...72,598,815
JBrowse link
G DHRS4 dehydrogenase/reductase (SDR family) member 4 ISO SMPDB SMP:00074 NCBI chr 7:75,242,121...75,255,594
Ensembl chr 7:75,242,124...75,255,598
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO SMPDB SMP:00074 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481
JBrowse link
G DNAJB11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00074 NCBI chr13:124,387,921...124,409,967
Ensembl chr13:124,390,970...124,413,200
JBrowse link
G ERP29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00074 NCBI chr14:39,687,028...39,695,748
Ensembl chr14:39,687,000...39,695,752
JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00074 NCBI chr 5:80,511,513...80,531,016
Ensembl chr 5:80,511,506...80,530,991
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00074 NCBI chr 1:265,930,044...265,934,959
Ensembl chr 1:265,930,045...265,934,894
JBrowse link
G HYOU1 hypoxia up-regulated 1 ISO SMPDB SMP:00074 NCBI chr 9:46,264,929...46,277,056
Ensembl chr 9:46,264,933...46,276,995
JBrowse link
G LOC100512656 retinol dehydrogenase 16 ISO SMPDB SMP:00074 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434
JBrowse link
G LRAT lecithin retinol acyltransferase ISO SMPDB
RGD
PMID:21718801 RGD:6484679 SMP:00074 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681
JBrowse link
G PDIA2 protein disulfide isomerase family A member 2 ISO SMPDB SMP:00074 NCBI chr 3:41,394,267...41,397,547
Ensembl chr 3:41,394,058...41,397,687
JBrowse link
G PDIA4 protein disulfide isomerase family A member 4 ISO SMPDB SMP:00074 NCBI chr 9:109,260,850...109,280,256
Ensembl chr 9:109,252,011...109,280,247
JBrowse link
G PDIA6 protein disulfide isomerase family A member 6 ISO SMPDB SMP:00074 NCBI chr 3:125,752,079...125,774,225
Ensembl chr 3:125,751,978...125,776,077
JBrowse link
G PLB1 phospholipase B1 ISO RGD PMID:8117729 PMID:21718801 RGD:6484679 RGD:6903951 NCBI chr 3:110,605,923...110,741,236
Ensembl chr 3:110,605,923...110,741,130
JBrowse link
G PNLIP pancreatic lipase ISO RGD PMID:21718801 RGD:6484679 NCBI chr14:126,771,920...126,789,097
Ensembl chr14:126,772,911...126,790,001
JBrowse link
G PNLIPRP2 pancreatic lipase related protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr14:126,817,647...126,839,273
Ensembl chr14:126,817,642...126,839,259
JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00074 NCBI chr  X:4,540,846...4,623,831
NCBI chr  Y:3,287,635...3,369,286
JBrowse link
G PPIB peptidylprolyl isomerase B ISO SMPDB SMP:00074 NCBI chr 1:107,886,663...107,893,155
Ensembl chr 1:107,886,658...107,893,253
JBrowse link
G RBP2 retinol binding protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr13:80,321,024...80,346,032
Ensembl chr13:80,320,931...80,352,975
JBrowse link
G RDH11 retinol dehydrogenase 11 ISO SMPDB SMP:00074 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405
JBrowse link
G RDH12 retinol dehydrogenase 12 ISO SMPDB SMP:00074 NCBI chr 7:91,481,238...91,493,838
Ensembl chr 7:91,481,272...91,493,809
JBrowse link
G RDH8 retinol dehydrogenase 8 ISO SMPDB SMP:00074 NCBI chr 2:68,871,707...68,878,222
Ensembl chr 2:68,871,707...68,877,675
JBrowse link
G RETSAT retinol saturase ISO SMPDB SMP:00074 NCBI chr 3:59,401,161...59,416,829
Ensembl chr 3:59,399,688...59,416,685
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00074 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467
JBrowse link
G SCARB1 scavenger receptor class B member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr14:28,301,421...28,393,568
Ensembl chr14:28,301,294...28,393,568
JBrowse link
G SDF2L1 stromal cell derived factor 2 like 1 ISO SMPDB SMP:00074 NCBI chr14:50,249,607...50,251,636
Ensembl chr14:50,246,710...50,251,642
JBrowse link
spermidine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD
SMPDB
PMID:1415709 PMID:10430362 PMID:10712236 RGD:1578320 RGD:7242911 RGD:7242912 SMP:00445 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB SMP:00445 NCBI chr 3:59,220,203...59,225,097
Ensembl chr 3:59,218,688...59,225,249
JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB SMP:00445 NCBI chr16:60,255,541...60,274,228
Ensembl chr16:60,255,358...60,274,135
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO RGD
SMPDB
PMID:1415709 PMID:2292587 PMID:10430362 RGD:1578320 RGD:7242912 RGD:7242932 SMP:00445 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,087,242...126,096,051
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:2292587 RGD:7242932 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,906...19,910,974
JBrowse link
G SMS spermine synthase ISO SMPDB SMP:00445 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,256...18,169,390
JBrowse link
G SRM spermidine synthase ISO RGD
SMPDB
PMID:2292587 PMID:16931179 PMID:23073625 RGD:7242425 RGD:7242920 RGD:7242932 SMP:00445 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,246,876...71,253,508
JBrowse link
spermine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD
SMPDB
PMID:1415709 PMID:10430362 PMID:10712236 RGD:1578320 RGD:7242911 RGD:7242912 SMP:00445 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB SMP:00445 NCBI chr 3:59,220,203...59,225,097
Ensembl chr 3:59,218,688...59,225,249
JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB SMP:00445 NCBI chr16:60,255,541...60,274,228
Ensembl chr16:60,255,358...60,274,135
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO SMPDB
RGD
PMID:1415709 PMID:2292587 PMID:10430362 RGD:1578320 RGD:7242912 RGD:7242932 SMP:00445 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,087,242...126,096,051
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:2292587 RGD:7242932 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,906...19,910,974
JBrowse link
G SMS spermine synthase ISO RGD
SMPDB
PMID:2292587 PMID:23073625 RGD:7242425 RGD:7242932 SMP:00445 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,256...18,169,390
JBrowse link
G SRM spermidine synthase ISO SMPDB SMP:00445 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,246,876...71,253,508
JBrowse link
transsulfuration pathway of homocysteine metabolism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO SMPDB
RGD
PMID:20162368 RGD:7242427 SMP:00455 NCBI chr13:206,205,942...206,231,363
Ensembl chr13:206,205,946...206,230,248
JBrowse link
G CDO1 cysteine dioxygenase type 1 ISO RGD PMID:20162368 RGD:7242427 NCBI chr 2:119,927,768...119,940,690
Ensembl chr 2:119,927,772...119,940,665
JBrowse link
G CSAD cysteine sulfinic acid decarboxylase ISO RGD PMID:20162368 RGD:7242427 NCBI chr 5:18,379,340...18,410,446
Ensembl chr 5:18,379,288...18,410,646
JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB
RGD
PMID:20162368 RGD:7242427 SMP:00455 NCBI chr 6:142,454,922...142,486,352
Ensembl chr 6:142,454,914...142,486,367
JBrowse link
visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARR3 arrestin 3 ISO RGD PMID:21824527 PMID:22074925 RGD:6893539 RGD:6893556 NCBI chr  X:56,295,107...56,310,507
Ensembl chr  X:56,296,596...56,310,506
JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 8:37,896,460...37,968,935
Ensembl chr 8:37,896,459...37,969,344
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 3:55,872,607...55,936,516
Ensembl chr 3:55,874,250...55,922,979
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 6:19,752,734...19,865,830 JBrowse link
G CNGB3 cyclic nucleotide gated channel subunit beta 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 4:50,112,927...50,263,264
Ensembl chr 4:50,112,927...50,263,222
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,498,707...110,524,072
JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 6:63,867,155...63,957,514
Ensembl chr 6:63,867,158...63,952,505
JBrowse link
G GNB3 G protein subunit beta 3 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 5:63,863,656...63,871,352
Ensembl chr 5:63,863,661...63,870,433
JBrowse link
G GNB5 G protein subunit beta 5 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 1:119,545,382...119,589,860
Ensembl chr 1:119,537,551...119,589,865
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 9:73,403,647...73,717,746
Ensembl chr 9:73,403,740...73,719,161
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO RGD PMID:21903131 RGD:6893555 NCBI chr11:78,793,670...78,803,291
Ensembl chr11:78,793,777...78,804,262
JBrowse link
G GRK7 G protein-coupled receptor kinase 7 ISO RGD PMID:21903131 RGD:6893555 NCBI chr13:82,577,604...82,630,689
Ensembl chr13:82,580,209...82,630,688
JBrowse link
G GUCA1B guanylate cyclase activator 1B ISO RGD PMID:22074925 RGD:6893539 NCBI chr 7:37,297,901...37,311,158
Ensembl chr 7:37,297,908...37,310,170
JBrowse link
G GUCY2D guanylate cyclase 2D, retinal ISO RGD PMID:22074925 RGD:6893539 NCBI chr12:53,200,570...53,250,566
Ensembl chr12:53,235,801...53,249,467
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal ISO RGD PMID:22074925 RGD:6893539 NCBI chr  X:89,557,952...89,653,491 JBrowse link
G LOC110255211 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2 ISO RGD PMID:22074925 RGD:6893539 NCBI chr12:25,334,619...25,340,775 JBrowse link
G LOC494564 medium-wave-sensitive opsin ISO RGD PMID:21704730 RGD:6893536 NCBI chr  X:124,816,014...124,828,225 JBrowse link
G OPN1SW opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr18:19,836,453...19,839,425
Ensembl chr18:19,836,453...19,839,425
JBrowse link
G PDE6A phosphodiesterase 6A ISO RGD PMID:15224133 RGD:6893540 NCBI chr 2:150,926,652...150,986,050
Ensembl chr 2:150,927,770...150,985,318
JBrowse link
G PDE6B phosphodiesterase 6B ISO RGD PMID:15224133 RGD:6893540 NCBI chr 8:80,378...111,960
Ensembl chr 8:80,378...110,672
JBrowse link
G PDE6C phosphodiesterase 6C ISO RGD PMID:15224133 RGD:6893540 NCBI chr14:105,010,974...105,122,628
Ensembl chr14:105,050,691...105,122,421
JBrowse link
G PDE6G phosphodiesterase 6G ISO RGD PMID:15224133 RGD:6893540 NCBI chr12:1,235,886...1,239,808
Ensembl chr12:1,236,210...1,239,306
JBrowse link
G PDE6H phosphodiesterase 6H ISO RGD PMID:15224133 RGD:6893540 NCBI chr 5:57,555,448...57,582,324
Ensembl chr 5:57,556,149...57,594,423
JBrowse link
G RCVRN recoverin ISO RGD PMID:22074925 RGD:6893539 NCBI chr12:54,740,642...54,752,291
Ensembl chr12:54,740,644...54,750,716
JBrowse link
G RGS9 regulator of G protein signaling 9 ISO RGD PMID:22074925 RGD:6893539 NCBI chr12:12,015,321...12,087,982
Ensembl chr12:12,015,321...12,087,976
JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein ISO RGD PMID:22074925 RGD:6893539 NCBI chr 6:42,560,059...42,563,179
Ensembl chr 6:42,560,113...42,565,154
JBrowse link
G RHO rhodopsin ISO RGD PMID:21704730 RGD:6893536 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651
JBrowse link
G SAG S-antigen visual arrestin ISO RGD PMID:21824527 PMID:22074925 RGD:6893539 RGD:6893556 NCBI chr15:133,704,975...133,741,844
Ensembl chr15:133,705,008...133,741,798
JBrowse link
G SLC24A1 solute carrier family 24 member 1 ISO RGD PMID:18690016 RGD:6893550 NCBI chr 1:163,603,223...163,662,071
Ensembl chr 1:163,604,594...163,658,318
JBrowse link
G SLC24A2 solute carrier family 24 member 2 ISO RGD PMID:18690016 RGD:6893550 NCBI chr 1:203,059,563...203,336,442
Ensembl chr 1:203,059,588...203,333,781
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4041
    regulatory pathway 2489
      homeostasis pathway 1301
        organic chemical homeostasis pathway 363
          S-adenosylmethionine homeostasis pathway + 264
          vitamin homeostasis + 100
paths to the root