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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00244 NCBI chrNW_004936745:856,915...867,477 JBrowse link
G Alas1 5'-aminolevulinate synthase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936529:3,518,337...3,531,842 JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00244 NCBI chrNW_004936558:4,362,693...4,387,705 JBrowse link
G Amt aminomethyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004936529:1,049,364...1,054,458 JBrowse link
G Cbs cystathionine beta-synthase ISO SMPDB SMP:00244 NCBI chrNW_004936500:976,043...1,003,559 JBrowse link
G Cth cystathionine gamma-lyase ISO SMPDB SMP:00244 NCBI chrNW_004936591:1,619,446...1,643,667 JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004936479:16,247,230...16,271,597 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004936549:6,838,773...6,899,961 JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004936588:721,436...724,475 JBrowse link
G Gars1 glycyl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936478:6,848,448...6,889,103 JBrowse link
G Gatm glycine amidinotransferase ISO SMPDB SMP:00244 NCBI chrNW_004936471:8,017,611...8,032,703 JBrowse link
G Gcat glycine C-acetyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004936492:3,307,015...3,313,441 JBrowse link
G Gldc glycine decarboxylase ISO SMPDB SMP:00244 NCBI chrNW_004936539:1,008,340...1,095,044 JBrowse link
G Glyctk glycerate kinase ISO SMPDB SMP:00244 NCBI chrNW_004936529:3,627,194...3,635,568 JBrowse link
G Gnmt glycine N-methyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004936476:16,961,734...16,965,487 JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936549:6,938,100...6,956,380 JBrowse link
G Maoa monoamine oxidase A ISO SMPDB SMP:00244 NCBI chrNW_004936502:9,816,443...9,888,002 JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004936627:4,414,122...4,448,347 JBrowse link
G Psat1 phosphoserine aminotransferase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936632:4,392,165...4,422,670 JBrowse link
G Psph phosphoserine phosphatase ISO SMPDB SMP:00244 NCBI chrNW_004936543:7,900,319...7,922,529 JBrowse link
G Sardh sarcosine dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004936669:3,244,302...3,297,906 JBrowse link
G Sars1 seryl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936704:747,109...766,981 JBrowse link
G Sds serine dehydratase ISO SMPDB SMP:00244 NCBI chrNW_004936668:3,208,810...3,213,465 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00244 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO SMPDB SMP:00244 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
G Srr serine racemase ISO SMPDB SMP:00244 NCBI chrNW_004936538:8,362,033...8,383,820 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3946
    disease pathway 686
      nutritional and metabolic disease pathway 557
        metabolic disease pathway 522
          mitochondrial disease pathway 81
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 3946
    disease pathway 686
      nutritional and metabolic disease pathway 557
        metabolic disease pathway 522
          inborn error of metabolism pathway 506
            inborn error of amino acid metabolism pathway 221
              sarcosinemia pathway 26
paths to the root