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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00244 NCBI chr15:139,720,648...139,730,737
Ensembl chr15:139,720,612...139,730,736
JBrowse link
G ALAS1 aminolevulinate, delta-, synthase 1 pseudogene ISO SMPDB SMP:00244 NCBI chr13:34,333,263...34,347,435
Ensembl chr13:34,333,113...34,347,590
JBrowse link
G ALDH2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00244 NCBI chr14:39,902,317...39,933,113
Ensembl chr14:39,896,565...39,933,124
JBrowse link
G AMT aminomethyltransferase ISO SMPDB SMP:00244 NCBI chr13:31,995,600...32,002,514
Ensembl chr13:31,995,595...32,002,470
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase ISO SMPDB SMP:00244 NCBI chr 2:87,911,093...87,935,252
Ensembl chr 2:87,866,607...87,935,253
JBrowse link
G CBS cystathionine beta-synthase ISO SMPDB SMP:00244 NCBI chr13:206,205,942...206,231,363 JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB SMP:00244 NCBI chr 6:142,454,922...142,486,352
Ensembl chr 6:142,435,690...142,486,367
JBrowse link
G DLD dihydrolipoamide dehydrogenase ISO SMPDB SMP:00244 NCBI chr 9:107,642,129...107,668,443
Ensembl chr 9:107,642,095...107,673,583
JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO SMPDB SMP:00244 NCBI chr 2:87,791,827...87,867,189
Ensembl chr 2:87,678,811...87,866,856
JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO SMPDB SMP:00244 NCBI chr 2:77,076,566...77,079,751
Ensembl chr 2:77,076,566...77,079,766
JBrowse link
G GARS1 glycyl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chr18:42,311,711...42,352,201
Ensembl chr18:42,311,576...42,352,162
JBrowse link
G GATM glycine amidinotransferase ISO SMPDB SMP:00244 NCBI chr 1:126,361,968...126,378,705
Ensembl chr 1:126,361,945...126,380,872
JBrowse link
G GCAT glycine C-acetyltransferase ISO SMPDB SMP:00244 NCBI chr 5:10,027,133...10,038,494
Ensembl chr 5:10,011,009...10,038,433
JBrowse link
G GLDC glycine decarboxylase ISO SMPDB SMP:00244 NCBI chr 1:215,608,854...215,715,062
Ensembl chr 1:215,608,849...215,715,061
JBrowse link
G GLYCTK glycerate kinase ISO SMPDB SMP:00244 NCBI chr13:34,433,403...34,440,037
Ensembl chr13:34,433,398...34,440,288
JBrowse link
G GNMT glycine N-methyltransferase ISO SMPDB SMP:00244 NCBI chr 7:38,038,359...38,041,218
Ensembl chr 7:38,038,358...38,041,218
JBrowse link
G MAOA monoamine oxidase A ISO SMPDB SMP:00244 NCBI chr  X:38,930,452...39,006,220 JBrowse link
G PHGDH phosphoglycerate dehydrogenase ISO SMPDB SMP:00244 NCBI chr 4:101,445,977...101,478,144
Ensembl chr 4:101,408,308...101,478,144
JBrowse link
G PSAT1 phosphoserine aminotransferase 1 ISO SMPDB SMP:00244 NCBI chr 1:231,142,673...231,172,364
Ensembl chr 1:231,142,625...231,172,363
JBrowse link
G PSPH phosphoserine phosphatase ISO SMPDB SMP:00244 NCBI chr 3:16,877,904...16,903,062
Ensembl chr 3:16,877,923...16,907,952
JBrowse link
G SARDH sarcosine dehydrogenase ISO SMPDB SMP:00244 NCBI chr 1:273,230,357...273,295,170
Ensembl chr 1:273,228,838...273,295,104
JBrowse link
G SARS1 seryl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chr 4:110,857,067...110,874,712
Ensembl chr 4:110,857,088...110,874,815
JBrowse link
G SDS serine dehydratase ISO SMPDB SMP:00244 NCBI chr14:38,503,922...38,513,908
Ensembl chr14:38,503,930...38,513,880
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00244 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO SMPDB SMP:00244 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,321
JBrowse link
G SRR serine racemase ISO SMPDB SMP:00244 NCBI chr12:48,386,915...48,407,917
Ensembl chr12:48,386,674...48,462,849
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4028
    disease pathway 711
      nutritional and metabolic disease pathway 574
        metabolic disease pathway 536
          mitochondrial disease pathway 82
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 4028
    disease pathway 711
      nutritional and metabolic disease pathway 574
        metabolic disease pathway 536
          inborn error of metabolism pathway 519
            inborn error of amino acid metabolism pathway 227
              sarcosinemia pathway 26
paths to the root