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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine-glyoxylate aminotransferase ISO SMPDB SMP:00244 NCBI chr 1:93,135,240...93,145,421
Ensembl chr 1:93,135,240...93,145,421
JBrowse link
G Alas1 aminolevulinic acid synthase 1 ISO SMPDB SMP:00244 NCBI chr 9:106,233,455...106,247,954
Ensembl chr 9:106,233,455...106,248,654
JBrowse link
G Aldh2 aldehyde dehydrogenase 2, mitochondrial ISO SMPDB SMP:00244 NCBI chr 5:121,566,027...121,593,824
Ensembl chr 5:121,566,027...121,593,824
JBrowse link
G Amt aminomethyltransferase ISO SMPDB SMP:00244 NCBI chr 9:108,296,905...108,302,302
Ensembl chr 9:108,296,853...108,302,302
JBrowse link
G Bhmt betaine-homocysteine methyltransferase ISO SMPDB SMP:00244 NCBI chr13:93,616,891...93,637,758
Ensembl chr13:93,616,675...93,637,961
JBrowse link
G Cbs cystathionine beta-synthase ISO SMPDB SMP:00244 NCBI chr17:31,612,623...31,637,233
Ensembl chr17:31,608,894...31,637,238
JBrowse link
G Cth cystathionase (cystathionine gamma-lyase) ISO SMPDB SMP:00244 NCBI chr 3:157,894,248...157,925,081
Ensembl chr 3:157,894,248...157,925,077
JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB SMP:00244 NCBI chr12:31,331,562...31,351,471
Ensembl chr12:31,331,277...31,351,453
JBrowse link
G Dmgdh dimethylglycine dehydrogenase precursor ISO SMPDB SMP:00244 NCBI chr13:93,674,436...93,752,823
Ensembl chr13:93,674,433...93,752,833
JBrowse link
G Gamt guanidinoacetate methyltransferase ISO SMPDB SMP:00244 NCBI chr10:80,258,151...80,261,025
Ensembl chr10:80,258,151...80,261,012
JBrowse link
G Gars glycyl-tRNA synthetase ISO SMPDB SMP:00244 NCBI chr 6:55,038,001...55,079,504
Ensembl chr 6:55,038,007...55,079,500
JBrowse link
G Gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase) ISO SMPDB SMP:00244 NCBI chr 2:122,594,473...122,611,277
Ensembl chr 2:122,594,467...122,611,303
JBrowse link
G Gcat glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) ISO SMPDB SMP:00244 NCBI chr15:79,030,874...79,042,531
Ensembl chr15:79,030,874...79,038,353
Ensembl chr15:79,030,874...79,038,353
JBrowse link
G Gldc glycine decarboxylase ISO SMPDB SMP:00244 NCBI chr19:30,098,441...30,175,441
Ensembl chr19:30,098,447...30,175,429
JBrowse link
G Glyctk glycerate kinase ISO SMPDB SMP:00244 NCBI chr 9:106,152,859...106,160,158
Ensembl chr 9:106,152,857...106,158,138
JBrowse link
G Gnmt glycine N-methyltransferase ISO SMPDB SMP:00244 NCBI chr17:46,725,664...46,729,211
Ensembl chr17:46,725,664...46,729,168
JBrowse link
G Maoa monoamine oxidase A ISO SMPDB SMP:00244 NCBI chr  X:16,619,698...16,687,812
Ensembl chr  X:16,619,698...16,687,818
JBrowse link
G Phgdh 3-phosphoglycerate dehydrogenase ISO SMPDB SMP:00244 NCBI chr 3:98,313,171...98,339,969
Ensembl chr 3:98,313,170...98,339,990
JBrowse link
G Psat1 phosphoserine aminotransferase 1 ISO SMPDB SMP:00244 NCBI chr19:15,905,123...15,925,059
Ensembl chr19:15,904,678...15,947,337
JBrowse link
G Psph phosphoserine phosphatase ISO SMPDB SMP:00244 NCBI chr 5:129,765,558...129,787,443
Ensembl chr 5:129,765,558...129,787,449
JBrowse link
G Sardh sarcosine dehydrogenase ISO SMPDB SMP:00244 NCBI chr 2:27,188,393...27,248,332
Ensembl chr 2:27,188,393...27,248,337
JBrowse link
G Sars seryl-aminoacyl-tRNA synthetase ISO SMPDB SMP:00244 NCBI chr 3:108,424,864...108,445,259
Ensembl chr 3:108,424,865...108,445,209
JBrowse link
G Sds serine dehydratase ISO SMPDB SMP:00244 NCBI chr 5:120,476,547...120,483,932
Ensembl chr 5:120,476,526...120,483,932
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 (soluble) ISO SMPDB SMP:00244 NCBI chr11:60,788,897...60,811,265
Ensembl chr11:60,788,104...60,811,718
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 (mitochondrial) ISO SMPDB SMP:00244 NCBI chr10:127,517,123...127,522,444
Ensembl chr10:127,517,123...127,522,444
JBrowse link
G Srr serine racemase ISO SMPDB SMP:00244 NCBI chr11:74,904,027...74,927,533
Ensembl chr11:74,906,359...74,925,948
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6067
    disease pathway 2094
      nutritional and metabolic disease pathway 700
        metabolic disease pathway 660
          mitochondrial disease pathway 83
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 6067
    disease pathway 2094
      nutritional and metabolic disease pathway 700
        metabolic disease pathway 660
          inborn error of metabolism pathway 529
            inborn error of amino acid metabolism pathway 229
              sarcosinemia pathway 26
paths to the root