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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase EXP SMPDB SMP:00244 NCBI chr 2:240,868,824...240,880,500
Ensembl chr 2:240,868,824...240,880,502
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 EXP SMPDB SMP:00244 NCBI chr 3:52,198,083...52,214,327
Ensembl chr 3:52,198,086...52,214,327
JBrowse link
G ALDH2 aldehyde dehydrogenase 2 family member EXP SMPDB SMP:00244 NCBI chr12:111,766,933...111,817,532
Ensembl chr12:111,766,887...111,817,532
JBrowse link
G AMT aminomethyltransferase EXP SMPDB SMP:00244 NCBI chr 3:49,416,778...49,422,473
Ensembl chr 3:49,416,778...49,422,685
Ensembl chr 3:49,416,778...49,422,685
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase EXP SMPDB SMP:00244 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288
JBrowse link
G CBS cystathionine beta-synthase EXP SMPDB SMP:00244 NCBI chr21:43,053,190...43,076,873
Ensembl chr21:43,053,191...43,076,943
JBrowse link
G CTH cystathionine gamma-lyase EXP SMPDB SMP:00244 NCBI chr 1:70,411,268...70,441,949
Ensembl chr 1:70,411,218...70,439,851
JBrowse link
G DLD dihydrolipoamide dehydrogenase EXP SMPDB SMP:00244 NCBI chr 7:107,891,107...107,921,198
Ensembl chr 7:107,891,162...107,931,730
JBrowse link
G DMGDH dimethylglycine dehydrogenase EXP SMPDB SMP:00244 NCBI chr 5:78,997,564...79,069,674
Ensembl chr 5:78,997,564...79,236,038
JBrowse link
G GAMT guanidinoacetate N-methyltransferase EXP SMPDB SMP:00244 NCBI chr19:1,397,026...1,401,542
Ensembl chr19:1,397,026...1,401,570
JBrowse link
G GARS1 glycyl-tRNA synthetase 1 EXP SMPDB SMP:00244 NCBI chr 7:30,594,735...30,634,033
Ensembl chr 7:30,580,533...30,634,033
Ensembl chr 7:30,580,533...30,634,033
JBrowse link
G GATM glycine amidinotransferase EXP SMPDB SMP:00244 NCBI chr15:45,361,124...45,402,227
Ensembl chr15:45,361,124...45,402,327
JBrowse link
G GCAT glycine C-acetyltransferase EXP SMPDB SMP:00244 NCBI chr22:37,807,894...37,817,183
Ensembl chr22:37,807,905...37,817,176
JBrowse link
G GLDC glycine decarboxylase EXP SMPDB SMP:00244 NCBI chr 9:6,532,467...6,645,729
Ensembl chr 9:6,532,464...6,645,783
Ensembl chr 9:6,532,464...6,645,783
JBrowse link
G GLYCTK glycerate kinase EXP SMPDB SMP:00244 NCBI chr 3:52,287,558...52,295,257
Ensembl chr 3:52,287,089...52,295,257
JBrowse link
G GNMT glycine N-methyltransferase EXP SMPDB SMP:00244 NCBI chr 6:42,960,754...42,963,880
Ensembl chr 6:42,960,754...42,963,880
JBrowse link
G MAOA monoamine oxidase A EXP SMPDB SMP:00244 NCBI chr  X:43,655,006...43,746,817
Ensembl chr  X:43,654,907...43,746,824
JBrowse link
G PHGDH phosphoglycerate dehydrogenase EXP SMPDB SMP:00244 NCBI chr 1:119,711,934...119,744,218
Ensembl chr 1:119,648,411...119,744,218
Ensembl chr 1:119,648,411...119,744,218
JBrowse link
G PSAT1 phosphoserine aminotransferase 1 EXP SMPDB SMP:00244 NCBI chr 9:78,297,125...78,330,093
Ensembl chr 9:78,297,125...78,330,093
JBrowse link
G PSPH phosphoserine phosphatase EXP SMPDB SMP:00244 NCBI chr 7:56,010,487...56,051,604
Ensembl chr 7:56,011,051...56,051,604
JBrowse link
G SARDH sarcosine dehydrogenase EXP SMPDB SMP:00244 NCBI chr 9:133,663,074...133,739,958
Ensembl chr 9:133,663,560...133,739,955
JBrowse link
G SARS1 seryl-tRNA synthetase 1 EXP SMPDB SMP:00244 NCBI chr 1:109,213,893...109,238,182
Ensembl chr 1:109,213,918...109,238,182
JBrowse link
G SDS serine dehydratase EXP SMPDB SMP:00244 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 EXP SMPDB SMP:00244 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 EXP SMPDB SMP:00244 NCBI chr12:57,229,685...57,234,935
Ensembl chr12:57,229,573...57,234,935
JBrowse link
G SRR serine racemase EXP SMPDB SMP:00244 NCBI chr17:2,303,371...2,325,267
Ensembl chr17:2,303,383...2,325,260
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5957
    disease pathway 2076
      nutritional and metabolic disease pathway 694
        metabolic disease pathway 650
          mitochondrial disease pathway 83
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 5957
    disease pathway 2076
      nutritional and metabolic disease pathway 694
        metabolic disease pathway 650
          inborn error of metabolism pathway 536
            inborn error of amino acid metabolism pathway 232
              sarcosinemia pathway 26
paths to the root