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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00244 NCBI chrNW_004955542:710,506...720,564
Ensembl chrNW_004955542:710,005...717,741
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 ISO SMPDB SMP:00244 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456
JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00244 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899
JBrowse link
G Amt aminomethyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004955532:1,351,743...1,358,220
Ensembl chrNW_004955532:1,351,743...1,358,220
JBrowse link
G Bhmt betaine--homocysteine S-methyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004955425:21,992,219...22,009,389
Ensembl chrNW_004955425:21,991,665...22,009,855
JBrowse link
G Cbs cystathionine beta-synthase ISO SMPDB SMP:00244 NCBI chrNW_004955407:38,924,355...38,939,790 JBrowse link
G Cth cystathionine gamma-lyase ISO SMPDB SMP:00244 NCBI chrNW_004955423:21,542,587...21,567,935
Ensembl chrNW_004955423:21,542,179...21,567,786
JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561
JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004955425:22,045,977...22,103,381
Ensembl chrNW_004955425:22,045,993...22,102,852
JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424
JBrowse link
G Gars1 glycyl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chrNW_004955410:31,778,654...31,819,287
Ensembl chrNW_004955410:31,779,543...31,819,113
JBrowse link
G Gatm glycine amidinotransferase ISO SMPDB SMP:00244 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603
JBrowse link
G Gcat glycine C-acetyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004955413:24,184,997...24,192,178
Ensembl chrNW_004955413:24,184,997...24,192,229
JBrowse link
G Gldc glycine decarboxylase ISO SMPDB SMP:00244 NCBI chrNW_004955434:10,431,434...10,533,118
Ensembl chrNW_004955434:10,431,983...10,533,002
JBrowse link
G Glyctk glycerate kinase ISO SMPDB SMP:00244 NCBI chrNW_004955532:3,933,964...3,939,858
Ensembl chrNW_004955532:3,936,160...3,942,868
JBrowse link
G Gnmt glycine N-methyltransferase ISO SMPDB SMP:00244 NCBI chrNW_004955437:8,944,288...8,946,642
Ensembl chrNW_004955437:8,944,047...8,946,642
JBrowse link
G Maoa amine oxidase [flavin-containing] A ISO SMPDB SMP:00244 NCBI chrNW_004955516:4,494,133...4,576,317
Ensembl chrNW_004955516:4,493,946...4,576,317
JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004955435:22,757,473...22,803,123
Ensembl chrNW_004955435:22,757,454...22,803,123
JBrowse link
G Psat1 phosphoserine aminotransferase 1 ISO SMPDB SMP:00244 NCBI chrNW_004955512:1,132,452...1,155,405
Ensembl chrNW_004955512:1,132,390...1,155,412
JBrowse link
G Psph phosphoserine phosphatase ISO SMPDB SMP:00244 NCBI chrNW_004955456:8,198,739...8,212,111
Ensembl chrNW_004955456:8,198,739...8,212,025
JBrowse link
G Sardh sarcosine dehydrogenase ISO SMPDB SMP:00244 NCBI chrNW_004955513:2,933,918...2,975,645
Ensembl chrNW_004955513:2,933,918...2,976,931
JBrowse link
G Sars1 seryl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chrNW_004955435:12,642,485...12,659,833
Ensembl chrNW_004955435:12,641,776...12,660,682
JBrowse link
G Sds serine dehydratase ISO SMPDB SMP:00244 NCBI chrNW_004955482:9,646,523...9,653,471
Ensembl chrNW_004955482:9,643,919...9,653,375
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00244 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO SMPDB SMP:00244 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691
JBrowse link
G Srr serine racemase ISO SMPDB SMP:00244 NCBI chrNW_004955481:919,692...940,066
Ensembl chrNW_004955481:871,654...937,770
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3928
    disease pathway 675
      nutritional and metabolic disease pathway 546
        metabolic disease pathway 514
          mitochondrial disease pathway 83
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 3928
    disease pathway 675
      nutritional and metabolic disease pathway 546
        metabolic disease pathway 514
          inborn error of metabolism pathway 497
            inborn error of amino acid metabolism pathway 216
              sarcosinemia pathway 26
paths to the root