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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sarcosinemia pathway
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Accession:PW:0001670 term browser browse the term
Definition:A rare autosomal recessive metabolic disorder due to mutations in sarcosine dehydrogenase resulting in alterations of sarcosine metabolism.
Synonyms:exact_synonym: SARCOS pathway;   SARD deficiency pathway;   SARDH deficiency pathway;   SARDHD pathway;   hypersarcosinemia pathway;   sarcosine dehydrogenase complex deficiency pathway;   sarcosinemia disease pathway
 related_synonym: SMP:00244


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sarcosinemia pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00244 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837
JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 ISO SMPDB SMP:00244 NCBI chr 3:52,140,423...52,156,656
Ensembl chr 3:53,369,522...53,385,361
JBrowse link
G ALDH2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00244 NCBI chr12:109,343,020...109,385,060
Ensembl chr12:112,734,243...112,776,471
JBrowse link
G AMT aminomethyltransferase ISO SMPDB SMP:00244 NCBI chr 3:49,344,590...49,350,383
Ensembl chr 3:50,589,193...50,594,968
JBrowse link
G BHMT betaine--homocysteine S-methyltransferase ISO SMPDB SMP:00244 NCBI chr 5:36,181,183...36,201,833
Ensembl chr 5:36,670,854...36,728,993
JBrowse link
G CBS cystathionine beta-synthase ISO SMPDB SMP:00244 NCBI chr21:29,361,519...29,385,610 JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB SMP:00244 NCBI chr 1:69,646,608...69,674,301
Ensembl chr 1:71,629,333...71,677,666
JBrowse link
G DLD dihydrolipoamide dehydrogenase ISO SMPDB SMP:00244 NCBI chr 7:99,872,020...99,901,884
Ensembl chr 7:112,593,934...112,623,629
JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO SMPDB SMP:00244 NCBI chr 5:36,241,341...36,313,995
Ensembl chr 5:36,732,005...36,805,883
JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO SMPDB SMP:00244 Ensembl chr19:1,371,312...1,375,461 JBrowse link
G GARS1 glycyl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chr 7:31,208,351...31,247,841
Ensembl chr 7:31,329,456...31,368,582
JBrowse link
G GATM glycine amidinotransferase ISO SMPDB SMP:00244 NCBI chr15:24,309,045...24,326,673
Ensembl chr15:42,639,597...42,657,209
JBrowse link
G GCAT glycine C-acetyltransferase ISO SMPDB SMP:00244 NCBI chr22:18,722,886...18,731,963
Ensembl chr22:36,554,067...36,563,429
JBrowse link
G GLDC glycine decarboxylase ISO SMPDB SMP:00244 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link
G GLYCTK glycerate kinase ISO SMPDB SMP:00244 NCBI chr 3:52,230,128...52,237,561
Ensembl chr 3:53,458,563...53,466,702
JBrowse link
G GNMT glycine N-methyltransferase ISO SMPDB SMP:00244 NCBI chr 6:42,550,631...42,554,385
Ensembl chr 6:43,846,560...43,849,679
JBrowse link
G LOC100993185 putative phosphoserine phosphatase-like protein ISO SMPDB SMP:00244 NCBI chr 7:56,351,434...56,376,714 JBrowse link
G MAOA monoamine oxidase A ISO SMPDB SMP:00244 NCBI chr  X:36,106,680...36,197,907
Ensembl chr  X:43,931,044...44,022,199
JBrowse link
G PHGDH phosphoglycerate dehydrogenase ISO SMPDB SMP:00244 NCBI chr 1:82,803,155...82,835,465
Ensembl chr 1:117,800,843...117,833,462
JBrowse link
G PSAT1 phosphoserine aminotransferase 1 ISO SMPDB SMP:00244 NCBI chr 9:46,517,253...46,550,018
Ensembl chr 9:77,147,493...77,180,439
JBrowse link
G SARDH sarcosine dehydrogenase ISO SMPDB SMP:00244 NCBI chr 9:104,786,774...104,864,480
Ensembl chr 9:133,398,806...133,473,642
JBrowse link
G SARS1 seryl-tRNA synthetase 1 ISO SMPDB SMP:00244 NCBI chr 1:111,590,850...111,615,068
Ensembl chr 1:110,755,054...110,779,704
JBrowse link
G SDS serine dehydratase ISO SMPDB SMP:00244 NCBI chr12:110,995,164...111,006,668
Ensembl chr12:114,377,650...114,388,839
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00244 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO SMPDB SMP:00244 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
G SRR serine racemase ISO SMPDB SMP:00244 NCBI chr17:2,294,440...2,316,244
Ensembl chr17:2,182,839...2,200,704
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4036
    disease pathway 700
      nutritional and metabolic disease pathway 571
        metabolic disease pathway 533
          mitochondrial disease pathway 82
            sarcosinemia pathway 26
Path 2
Term Annotations click to browse term
  pathway 4036
    disease pathway 700
      nutritional and metabolic disease pathway 571
        metabolic disease pathway 533
          inborn error of metabolism pathway 517
            inborn error of amino acid metabolism pathway 226
              sarcosinemia pathway 26
paths to the root