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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:musculoskeletal disease pathway
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Accession:PW:0001593 term browser browse the term
Definition:Those conditions affecting the muscular and skeletal systems and elements associated with them, arising from deregulation in a number of pathways.


show annotations for term's descendants           Sort by:
congenital hemidysplasia with ichthyosiform erythroderma and limb defects pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-Coenzyme A acetyltransferase 2 ISO SMPDB SMP:00387 NCBI chr17:13,161,929...13,179,612
Ensembl chr17:13,161,777...13,179,634 		JBrowse link
G Cyp51 cytochrome P450, family 51 ISO SMPDB SMP:00387 NCBI chr 5:4,130,674...4,154,697
Ensembl chr 5:4,131,145...4,154,746 		JBrowse link
G Dhcr24 24-dehydrocholesterol reductase ISO SMPDB SMP:00387 NCBI chr 4:106,418,279...106,446,310
Ensembl chr 4:106,418,235...106,446,310 		JBrowse link
G Ebp EBP cholestenol delta-isomerase ISO SMPDB SMP:00387 NCBI chr  X:8,051,568...8,059,751
Ensembl chr  X:8,051,568...8,059,751 		JBrowse link
G Fdft1 farnesyl diphosphate farnesyl transferase 1 ISO SMPDB SMP:00387 NCBI chr14:63,382,599...63,419,136
Ensembl chr14:63,382,599...63,417,027 		JBrowse link
G Fdps farnesyl diphosphate synthetase ISO SMPDB SMP:00387 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 ISO SMPDB SMP:00387 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase ISO SMPDB SMP:00387 NCBI chr13:96,785,470...96,807,444
Ensembl chr13:96,785,475...96,807,444 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 ISO SMPDB SMP:00387 NCBI chr13:120,151,887...120,169,796
Ensembl chr13:120,151,915...120,169,796 		JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 ISO SMPDB SMP:00387 NCBI chr 1:169,777,109...169,796,757
Ensembl chr 1:169,777,104...169,796,810 		JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase ISO SMPDB SMP:00387 NCBI chr13:8,935,642...8,942,432
Ensembl chr13:8,935,537...8,942,487 		JBrowse link
G Lipa lysosomal acid lipase A ISO SMPDB SMP:00387 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Lss lanosterol synthase ISO SMPDB SMP:00387 NCBI chr10:76,367,303...76,392,973
Ensembl chr10:76,367,422...76,392,972 		JBrowse link
G Msmo1 methylsterol monoxygenase 1 ISO SMPDB SMP:00387 NCBI chr 8:65,171,157...65,186,822
Ensembl chr 8:65,171,173...65,186,826 		JBrowse link
G Mvd mevalonate (diphospho) decarboxylase ISO SMPDB SMP:00387 NCBI chr 8:123,160,335...123,170,161
Ensembl chr 8:123,160,340...123,170,161 		JBrowse link
G Mvk mevalonate kinase ISO SMPDB SMP:00387 NCBI chr 5:114,582,324...114,598,652
Ensembl chr 5:114,582,330...114,598,652 		JBrowse link
G Nsdhl NAD(P) dependent steroid dehydrogenase-like ISO SMPDB SMP:00387 NCBI chr  X:71,962,127...72,002,134
Ensembl chr  X:71,962,163...72,002,120 		JBrowse link
G Pmvk phosphomevalonate kinase ISO SMPDB SMP:00387 NCBI chr 3:89,361,848...89,376,321
Ensembl chr 3:89,361,848...89,376,320 		JBrowse link
G Sc5d sterol-C5-desaturase ISO SMPDB SMP:00387 NCBI chr 9:42,162,888...42,175,607
Ensembl chr 9:42,162,891...42,175,552 		JBrowse link
G Soat1 sterol O-acyltransferase 1 ISO SMPDB SMP:00387 NCBI chr 1:156,255,678...156,301,898
Ensembl chr 1:156,252,095...156,301,901 		JBrowse link
G Sqle squalene epoxidase ISO SMPDB SMP:00387 NCBI chr15:59,186,941...59,203,042
Ensembl chr15:59,186,926...59,203,041 		JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 ISO SMPDB SMP:00387 NCBI chr19:6,112,851...6,117,880
Ensembl chr19:6,112,851...6,118,403 		JBrowse link
Kelley-Seegmiller syndrome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO SMPDB SMP:00365 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adcy10 adenylate cyclase 10 ISO SMPDB SMP:00365 NCBI chr 1:165,309,114...165,404,347
Ensembl chr 1:165,312,752...165,404,343 		JBrowse link
G Adsl adenylosuccinate lyase ISO SMPDB SMP:00365 NCBI chr15:80,832,691...80,855,148
Ensembl chr15:80,832,691...80,855,147 		JBrowse link
G Adss2 adenylosuccinate synthase 2 ISO SMPDB SMP:00365 NCBI chr 1:177,590,742...177,624,064
Ensembl chr 1:177,590,528...177,624,077 		JBrowse link
G Ak1 adenylate kinase 1 ISO SMPDB SMP:00365 NCBI chr 2:32,511,770...32,525,070
Ensembl chr 2:32,511,770...32,525,070 		JBrowse link
G Ampd1 adenosine monophosphate deaminase 1 ISO SMPDB SMP:00365 NCBI chr 3:102,981,330...103,007,038
Ensembl chr 3:102,981,330...103,007,036 		JBrowse link
G Aprt adenine phosphoribosyl transferase ISO SMPDB SMP:00365 NCBI chr 8:123,301,376...123,303,646
Ensembl chr 8:123,301,374...123,303,648 		JBrowse link
G Atad1 ATPase family, AAA domain containing 1 ISO SMPDB SMP:00365 NCBI chr19:32,649,958...32,717,187
Ensembl chr19:32,649,038...32,717,186 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO SMPDB SMP:00365 NCBI chr 1:71,596,315...71,618,562
Ensembl chr 1:71,596,309...71,618,790 		JBrowse link
G Dguok deoxyguanosine kinase ISO SMPDB SMP:00365 NCBI chr 6:83,457,199...83,483,887
Ensembl chr 6:83,457,199...83,483,951 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 ISO SMPDB SMP:00365 NCBI chr12:84,420,649...84,455,803
Ensembl chr12:84,420,631...84,455,803 		JBrowse link
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 ISO SMPDB SMP:00365 NCBI chr 2:24,969,308...24,975,731
Ensembl chr 2:24,970,316...24,975,728 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase ISO SMPDB SMP:00365 NCBI chr16:91,418,283...91,444,505
Ensembl chr16:91,418,074...91,443,840 		JBrowse link
G Gda guanine deaminase ISO SMPDB SMP:00365 NCBI chr19:21,368,671...21,450,025
Ensembl chr19:21,368,671...21,450,809 		JBrowse link
G Gmpr guanosine monophosphate reductase ISO SMPDB SMP:00365 NCBI chr13:45,660,905...45,699,862
Ensembl chr13:45,660,920...45,707,276 		JBrowse link
G Gmps guanine monophosphate synthetase ISO SMPDB SMP:00365 NCBI chr 3:63,871,054...63,928,975
Ensembl chr 3:63,883,527...63,930,000 		JBrowse link
G Gucy1a2 guanylate cyclase 1, soluble, alpha 2 ISO SMPDB SMP:00365 NCBI chr 9:3,532,349...3,905,791
Ensembl chr 9:3,532,778...3,894,736 		JBrowse link
G Gucy1b1 guanylate cyclase 1, soluble, beta 1 ISO SMPDB SMP:00365 NCBI chr 3:81,939,311...81,982,018
Ensembl chr 3:81,939,313...81,981,996 		JBrowse link
G Guk1 guanylate kinase 1 ISO SMPDB SMP:00365 NCBI chr11:59,074,696...59,083,068
Ensembl chr11:59,074,701...59,083,069 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO SMPDB SMP:00365 NCBI chr  X:52,076,955...52,110,537
Ensembl chr  X:52,077,014...52,110,536 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO SMPDB SMP:00365 NCBI chr 6:29,200,435...29,216,363
Ensembl chr 6:29,200,433...29,216,363 		JBrowse link
G Itpa inosine triphosphatase (nucleoside triphosphate pyrophosphatase) ISO SMPDB SMP:00365 NCBI chr 2:130,506,702...130,523,534
Ensembl chr 2:130,509,530...130,523,534 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 ISO SMPDB SMP:00365 NCBI chr 9:109,661,830...109,672,042
Ensembl chr 9:109,661,817...109,672,184 		JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II ISO SMPDB SMP:00365 NCBI chr19:46,873,829...47,003,613
Ensembl chr19:46,871,756...47,003,592 		JBrowse link
G Nudt2 nudix hydrolase 2 ISO SMPDB SMP:00365 NCBI chr 4:41,465,085...41,480,926
Ensembl chr 4:41,465,151...41,480,926 		JBrowse link
G Nudt5 nudix hydrolase 5 ISO SMPDB SMP:00365 NCBI chr 2:5,849,839...5,875,631
Ensembl chr 2:5,849,830...5,876,706 		JBrowse link
G Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase ISO SMPDB SMP:00365 NCBI chr 5:77,099,149...77,115,356
Ensembl chr 5:77,099,154...77,115,356 		JBrowse link
G Pde10a phosphodiesterase 10A ISO SMPDB SMP:00365 NCBI chr17:8,742,719...9,205,480
Ensembl chr17:8,744,204...9,205,480 		JBrowse link
G Pde4d phosphodiesterase 4D, cAMP specific ISO SMPDB SMP:00365 NCBI chr13:108,790,711...110,092,503
Ensembl chr13:108,586,482...110,089,995 		JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) ISO SMPDB SMP:00365 NCBI chr11:68,876,527...68,899,286
Ensembl chr11:68,876,523...68,899,286 		JBrowse link
G Pnp2 purine-nucleoside phosphorylase 2 ISO SMPDB SMP:00365 NCBI chr14:51,193,598...51,202,206
Ensembl chr14:51,193,449...51,202,206 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO SMPDB SMP:00365 NCBI chr 5:77,061,096...77,099,425
Ensembl chr 5:77,061,096...77,099,425 		JBrowse link
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 ISO SMPDB SMP:00365 NCBI chr12:35,034,760...35,036,435
Ensembl chr12:35,034,760...35,036,435 		JBrowse link
G Rrm1 ribonucleotide reductase M1 ISO SMPDB SMP:00365 NCBI chr 7:102,090,902...102,118,978
Ensembl chr 7:102,090,902...102,118,978 		JBrowse link
G Rrm2 ribonucleotide reductase M2 ISO SMPDB SMP:00365 NCBI chr12:24,758,253...24,764,145
Ensembl chr12:24,758,240...24,764,145 		JBrowse link
G Txn1 thioredoxin 1 ISO SMPDB SMP:00365 NCBI chr 4:57,943,373...57,956,411
Ensembl chr 4:57,943,373...57,956,411 		JBrowse link
G Xdh xanthine dehydrogenase ISO SMPDB SMP:00365 NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191 		JBrowse link
methylenetetrahydrofolate reductase deficiency pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy S-adenosylhomocysteine hydrolase ISO SMPDB SMP:00340 NCBI chr 2:154,901,230...154,916,417
Ensembl chr 2:154,901,230...154,916,417 		JBrowse link
G Amd1 S-adenosylmethionine decarboxylase 1 ISO SMPDB SMP:00340 NCBI chr10:40,163,454...40,178,184
Ensembl chr10:40,163,454...40,178,184 		JBrowse link
G Bhmt betaine-homocysteine methyltransferase ISO SMPDB SMP:00340 NCBI chr13:93,753,399...93,774,266
Ensembl chr13:93,753,183...93,774,469 		JBrowse link
G Cbs cystathionine beta-synthase ISO SMPDB SMP:00340 NCBI chr17:31,831,602...31,856,170
Ensembl chr17:31,827,868...31,856,212 		JBrowse link
G Chdh choline dehydrogenase ISO SMPDB SMP:00340 NCBI chr14:29,730,957...29,762,423
Ensembl chr14:29,730,980...29,762,484 		JBrowse link
G Cth cystathionine gamma lyase ISO SMPDB SMP:00340 NCBI chr 3:157,599,885...157,630,718
Ensembl chr 3:157,599,885...157,630,714 		JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO SMPDB SMP:00340 NCBI chr 9:20,818,501...20,871,084
Ensembl chr 9:20,818,505...20,871,184 		JBrowse link
G Il4i1 interleukin 4 induced 1 ISO SMPDB SMP:00340 NCBI chr 7:44,485,712...44,490,233
Ensembl chr 7:44,465,811...44,490,233 		JBrowse link
G Mars1 methionine-tRNA synthetase 1 ISO SMPDB SMP:00340 NCBI chr10:127,132,090...127,147,655
Ensembl chr10:127,132,090...127,147,655 		JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00340 NCBI chr 6:72,409,779...72,416,539
Ensembl chr 6:72,409,782...72,416,541 		JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit methionine ISO SMPDB SMP:00340 NCBI chr11:40,570,141...40,586,030
Ensembl chr11:40,570,141...40,586,030 		JBrowse link
G Msrb2 methionine sulfoxide reductase B2 ISO SMPDB SMP:00340 NCBI chr 2:19,376,247...19,399,787
Ensembl chr 2:19,376,251...19,399,787 		JBrowse link
G Msrb3 methionine sulfoxide reductase B3 ISO SMPDB SMP:00340 NCBI chr10:120,617,005...120,735,132
Ensembl chr10:120,617,001...120,735,006 		JBrowse link
G Mtap methylthioadenosine phosphorylase ISO SMPDB SMP:00340 NCBI chr 4:89,055,607...89,099,327
Ensembl chr 4:89,055,359...89,099,318 		JBrowse link
G Mtfmt mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00340 NCBI chr 9:65,343,064...65,360,336
Ensembl chr 9:65,343,064...65,360,336 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO SMPDB SMP:00340 NCBI chr 4:148,123,534...148,144,019
Ensembl chr 4:148,123,534...148,144,008 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB SMP:00340 NCBI chr13:12,196,217...12,273,090
Ensembl chr13:12,197,598...12,272,999 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 (soluble) ISO SMPDB SMP:00340 NCBI chr11:60,679,723...60,702,062
Ensembl chr11:60,678,930...60,702,544 		JBrowse link
G Srm spermidine synthase ISO SMPDB SMP:00340 NCBI chr 4:148,675,970...148,679,076
Ensembl chr 4:148,675,960...148,679,450 		JBrowse link
rheumatoid arthritis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant IEA KEGG mmu:05323 NCBI chr 9:22,038,023...22,047,042
Ensembl chr 9:22,038,023...22,047,007 		JBrowse link
G Angpt1 angiopoietin 1 IEA KEGG mmu:05323 NCBI chr15:42,288,063...42,540,373
Ensembl chr15:42,288,119...42,540,373 		JBrowse link
G Atp6ap1 ATPase, H+ transporting, lysosomal accessory protein 1 IEA KEGG mmu:05323 NCBI chr  X:73,340,753...73,348,297
Ensembl chr  X:73,340,703...73,348,327 		JBrowse link
G Atp6v0a1 ATPase, H+ transporting, lysosomal V0 subunit A1 IEA KEGG mmu:05323 NCBI chr11:100,899,262...100,954,545
Ensembl chr11:100,900,278...100,954,545 		JBrowse link
G Atp6v0a2 ATPase, H+ transporting, lysosomal V0 subunit A2 IEA KEGG mmu:05323 NCBI chr 5:124,767,117...124,801,519
Ensembl chr 5:124,766,641...124,801,519 		JBrowse link
G Atp6v0a4 ATPase, H+ transporting, lysosomal V0 subunit A4 IEA KEGG mmu:05323 NCBI chr 6:38,025,418...38,101,521
Ensembl chr 6:38,025,418...38,101,521 		JBrowse link
G Atp6v0b ATPase, H+ transporting, lysosomal V0 subunit B IEA KEGG mmu:05323 NCBI chr 4:117,741,523...117,744,548
Ensembl chr 4:117,741,523...117,744,530 		JBrowse link
G Atp6v0c ATPase, H+ transporting, lysosomal V0 subunit C IEA KEGG mmu:05323 NCBI chr17:24,382,839...24,388,652
Ensembl chr17:24,382,840...24,388,676 		JBrowse link
G Atp6v0d1 ATPase, H+ transporting, lysosomal V0 subunit D1 IEA KEGG mmu:05323 NCBI chr 8:106,251,093...106,292,696
Ensembl chr 8:106,251,097...106,292,679 		JBrowse link
G Atp6v0d2 ATPase, H+ transporting, lysosomal V0 subunit D2 IEA KEGG mmu:05323 NCBI chr 4:19,876,838...19,922,566
Ensembl chr 4:19,876,841...19,922,605 		JBrowse link
G Atp6v0e ATPase, H+ transporting, lysosomal V0 subunit E IEA KEGG mmu:05323 NCBI chr17:26,895,370...26,918,621
Ensembl chr17:26,882,205...26,918,621 		JBrowse link
G Atp6v0e2 ATPase, H+ transporting, lysosomal V0 subunit E2 IEA KEGG mmu:05323 NCBI chr 6:48,514,503...48,518,735
Ensembl chr 6:48,514,549...48,518,735 		JBrowse link
G Atp6v1a ATPase, H+ transporting, lysosomal V1 subunit A IEA KEGG mmu:05323 NCBI chr16:43,905,765...43,960,055
Ensembl chr16:43,905,765...43,960,068 		JBrowse link
G Atp6v1b1 ATPase, H+ transporting, lysosomal V1 subunit B1 IEA KEGG mmu:05323 NCBI chr 6:83,719,999...83,735,837
Ensembl chr 6:83,719,972...83,735,837 		JBrowse link
G Atp6v1b2 ATPase, H+ transporting, lysosomal V1 subunit B2 IEA KEGG mmu:05323 NCBI chr 8:69,541,388...69,566,370
Ensembl chr 8:69,541,298...69,566,363 		JBrowse link
G Atp6v1c1 ATPase, H+ transporting, lysosomal V1 subunit C1 IEA KEGG mmu:05323 NCBI chr15:38,662,096...38,692,688
Ensembl chr15:38,662,177...38,692,690 		JBrowse link
G Atp6v1c2 ATPase, H+ transporting, lysosomal V1 subunit C2 IEA KEGG mmu:05323 NCBI chr12:17,334,722...17,375,700
Ensembl chr12:17,334,722...17,379,360 		JBrowse link
G Atp6v1d ATPase, H+ transporting, lysosomal V1 subunit D IEA KEGG mmu:05323 NCBI chr12:78,889,756...78,908,810
Ensembl chr12:78,887,499...78,908,412 		JBrowse link
G Atp6v1e1 ATPase, H+ transporting, lysosomal V1 subunit E1 IEA KEGG mmu:05323 NCBI chr 6:120,772,205...120,799,659
Ensembl chr 6:120,771,266...120,799,754 		JBrowse link
G Atp6v1e2 ATPase, H+ transporting, lysosomal V1 subunit E2 IEA KEGG mmu:05323 NCBI chr17:87,251,537...87,255,315
Ensembl chr17:87,251,537...87,255,325 		JBrowse link
G Atp6v1f ATPase, H+ transporting, lysosomal V1 subunit F IEA KEGG mmu:05323 NCBI chr 6:29,467,782...29,470,508
Ensembl chr 6:29,467,717...29,470,511 		JBrowse link
G Atp6v1g1 ATPase, H+ transporting, lysosomal V1 subunit G1 IEA KEGG mmu:05323 NCBI chr 4:63,463,002...63,468,938
Ensembl chr 4:63,463,009...63,468,987 		JBrowse link
G Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 IEA KEGG mmu:05323 NCBI chr17:35,453,910...35,457,743
Ensembl chr17:35,452,636...35,457,743 		JBrowse link
G Atp6v1g3 ATPase, H+ transporting, lysosomal V1 subunit G3 IEA KEGG mmu:05323 NCBI chr 1:138,201,476...138,217,200
Ensembl chr 1:138,201,476...138,217,200 		JBrowse link
G Atp6v1h ATPase, H+ transporting, lysosomal V1 subunit H IEA KEGG mmu:05323 NCBI chr 1:5,153,201...5,233,438
Ensembl chr 1:5,140,241...5,232,752 		JBrowse link
G Ccl20 C-C motif chemokine ligand 20 IEA KEGG mmu:05323 NCBI chr 1:83,094,487...83,096,888
Ensembl chr 1:83,094,487...83,096,888 		JBrowse link
G Ccl3 C-C motif chemokine ligand 3 IEA KEGG mmu:05323 NCBI chr11:83,538,669...83,540,204
Ensembl chr11:83,538,670...83,540,181 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 IEA KEGG mmu:05323 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344 		JBrowse link
G Cd28 CD28 antigen IEA KEGG mmu:05323 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Cd80 CD80 antigen IEA KEGG mmu:05323 NCBI chr16:38,277,793...38,316,682
Ensembl chr16:38,275,923...38,316,697 		JBrowse link
G Cd86 CD86 antigen IEA KEGG mmu:05323 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443 		JBrowse link
G Csf1 colony stimulating factor 1 (macrophage) IEA KEGG mmu:05323 NCBI chr 3:107,648,364...107,668,048
Ensembl chr 3:107,648,364...107,667,785 		JBrowse link
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) IEA KEGG mmu:05323 NCBI chr11:54,138,096...54,140,725
Ensembl chr11:54,138,097...54,140,493 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 IEA KEGG mmu:05323 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991 		JBrowse link
G Ctsk cathepsin K IEA KEGG mmu:05323 NCBI chr 3:95,406,521...95,416,698
Ensembl chr 3:95,406,567...95,416,673 		JBrowse link
G Ctsl cathepsin L IEA KEGG mmu:05323 NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 IEA KEGG mmu:05323 NCBI chr 6:117,145,496...117,158,329
Ensembl chr 6:117,145,496...117,158,328 		JBrowse link
G Cxcl5 C-X-C motif chemokine ligand 5 IEA KEGG mmu:05323 NCBI chr 5:90,907,157...90,909,484
Ensembl chr 5:90,907,219...90,909,483 		JBrowse link
G Flt1 FMS-like tyrosine kinase 1 IEA KEGG mmu:05323 NCBI chr 5:147,498,414...147,663,419
Ensembl chr 5:147,498,414...147,662,821 		JBrowse link
G Fos FBJ osteosarcoma oncogene IEA KEGG mmu:05323 NCBI chr12:85,520,664...85,524,048
Ensembl chr12:85,520,664...85,524,047 		JBrowse link
G H2-Aa histocompatibility 2, class II antigen A, alpha IEA KEGG mmu:05323 NCBI chr17:34,501,718...34,506,797
Ensembl chr17:34,501,718...34,506,797 		JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 IEA KEGG mmu:05323 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa IEA KEGG mmu:05323 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G H2-DMb1 histocompatibility 2, class II, locus Mb1 IEA KEGG mmu:05323 NCBI chr17:34,372,165...34,379,203
Ensembl chr17:34,372,046...34,379,204 		JBrowse link
G H2-DMb2 histocompatibility 2, class II, locus Mb2 IEA KEGG mmu:05323 NCBI chr17:34,362,203...34,370,527
Ensembl chr17:34,362,281...34,370,529 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha IEA KEGG mmu:05323 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta IEA KEGG mmu:05323 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G H2-Oa histocompatibility 2, O region alpha locus IEA KEGG mmu:05323 NCBI chr17:34,311,353...34,314,286
Ensembl chr17:34,311,314...34,314,208 		JBrowse link
G H2-Ob histocompatibility 2, O region beta locus IEA KEGG mmu:05323 NCBI chr17:34,457,879...34,464,882
Ensembl chr17:34,457,877...34,473,388 		JBrowse link
G Icam1 intercellular adhesion molecule 1 IEA KEGG mmu:05323 NCBI chr 9:20,927,236...20,940,110
Ensembl chr 9:20,927,281...20,940,113 		JBrowse link
G Ifng interferon gamma IEA KEGG mmu:05323 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Il11 interleukin 11 IEA KEGG mmu:05323 NCBI chr 7:4,775,372...4,785,877
Ensembl chr 7:4,775,372...4,785,858 		JBrowse link
G Il15 interleukin 15 IEA KEGG mmu:05323 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
G Il17a interleukin 17A IEA KEGG mmu:05323 NCBI chr 1:20,801,129...20,804,720
Ensembl chr 1:20,801,129...20,804,720 		JBrowse link
G Il18 interleukin 18 IEA KEGG mmu:05323 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140 		JBrowse link
G Il1a interleukin 1 alpha IEA KEGG mmu:05323 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892 		JBrowse link
G Il1b interleukin 1 beta IEA KEGG mmu:05323 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059 		JBrowse link
G Il23a interleukin 23, alpha subunit p19 IEA KEGG mmu:05323 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621 		JBrowse link
G Il6 interleukin 6 IEA KEGG mmu:05323 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Itgal integrin alpha L IEA KEGG mmu:05323 NCBI chr 7:126,895,404...126,934,309
Ensembl chr 7:126,895,432...126,934,310 		JBrowse link
G Itgb2 integrin beta 2 IEA KEGG mmu:05323 NCBI chr10:77,366,164...77,401,542
Ensembl chr10:77,366,086...77,401,542 		JBrowse link
G Itgb2l integrin beta 2-like IEA KEGG mmu:05323 NCBI chr16:96,223,488...96,244,861
Ensembl chr16:96,223,488...96,244,819 		JBrowse link
G Jun jun proto-oncogene IEA KEGG mmu:05323 NCBI chr 4:94,937,273...94,940,459
Ensembl chr 4:94,937,271...94,940,459 		JBrowse link
G Ltb lymphotoxin B IEA KEGG mmu:05323 NCBI chr17:35,413,483...35,415,281
Ensembl chr17:35,413,415...35,415,296 		JBrowse link
G Mmp1a matrix metallopeptidase 1a (interstitial collagenase) IEA KEGG mmu:05323 NCBI chr 9:7,464,141...7,476,870
Ensembl chr 9:7,464,141...7,476,857 		JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) IEA KEGG mmu:05323 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047 		JBrowse link
G Mmp3 matrix metallopeptidase 3 IEA KEGG mmu:05323 NCBI chr 9:7,445,845...7,455,975
Ensembl chr 9:7,445,822...7,455,975 		JBrowse link
G Pgf placental growth factor IEA KEGG mmu:05323 NCBI chr12:85,213,413...85,224,087
Ensembl chr12:85,213,409...85,224,564 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 IEA KEGG mmu:05323 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tek TEK receptor tyrosine kinase IEA KEGG mmu:05323 NCBI chr 4:94,627,322...94,763,213
Ensembl chr 4:94,627,526...94,763,213 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEA KEGG mmu:05323 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEA KEGG mmu:05323 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEA KEGG mmu:05323 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Tlr2 toll-like receptor 2 IEA KEGG mmu:05323 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074 		JBrowse link
G Tlr4 toll-like receptor 4 IEA KEGG mmu:05323 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521 		JBrowse link
G Tnf tumor necrosis factor IEA KEGG mmu:05323 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IEA KEGG mmu:05323 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709 		JBrowse link
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 IEA KEGG mmu:05323 NCBI chr14:78,514,886...78,545,483
Ensembl chr14:78,514,885...78,545,483 		JBrowse link
G Tnfsf13 tumor necrosis factor (ligand) superfamily, member 13 IEA KEGG mmu:05323 NCBI chr11:69,573,403...69,576,380
Ensembl chr11:69,573,672...69,576,610 		JBrowse link
G Tnfsf13b tumor necrosis factor (ligand) superfamily, member 13b IEA KEGG mmu:05323 NCBI chr 8:10,056,637...10,086,000
Ensembl chr 8:10,056,467...10,089,072 		JBrowse link
G Vegfa vascular endothelial growth factor A IEA KEGG mmu:05323 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
G Vegfb vascular endothelial growth factor B IEA KEGG mmu:05323 NCBI chr19:6,959,840...6,965,019
Ensembl chr19:6,959,841...6,965,019 		JBrowse link
very long-chain acyl-CoA dehydrogenase deficiency pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 ISO SMPDB SMP:00540 NCBI chr18:74,912,283...74,939,278
Ensembl chr18:74,912,268...74,939,279 		JBrowse link
G Acadl acyl-Coenzyme A dehydrogenase, long-chain ISO SMPDB SMP:00540 NCBI chr 1:66,869,998...66,902,468
Ensembl chr 1:66,869,998...66,902,436 		JBrowse link
G Acadm acyl-Coenzyme A dehydrogenase, medium chain ISO SMPDB SMP:00540 NCBI chr 3:153,627,990...153,650,280
Ensembl chr 3:153,627,994...153,650,269 		JBrowse link
G Acads acyl-Coenzyme A dehydrogenase, short chain ISO SMPDB SMP:00540 NCBI chr 5:115,248,358...115,257,405
Ensembl chr 5:115,248,358...115,257,405 		JBrowse link
G Acadsb acyl-Coenzyme A dehydrogenase, short/branched chain ISO SMPDB SMP:00540 NCBI chr 7:131,012,330...131,047,940
Ensembl chr 7:131,012,330...131,050,673 		JBrowse link
G Acadvl acyl-Coenzyme A dehydrogenase, very long chain ISO SMPDB SMP:00540 NCBI chr11:69,901,009...69,906,254
Ensembl chr11:69,901,009...69,906,237 		JBrowse link
G Acat1 acetyl-Coenzyme A acetyltransferase 1 ISO SMPDB SMP:00540 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
G Acsl1 acyl-CoA synthetase long-chain family member 1 ISO SMPDB SMP:00540 NCBI chr 8:46,924,214...46,989,088
Ensembl chr 8:46,924,074...46,989,088 		JBrowse link
G Cpt1a carnitine palmitoyltransferase 1a, liver ISO SMPDB SMP:00540 NCBI chr19:3,372,328...3,435,735
Ensembl chr19:3,372,334...3,435,733 		JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 ISO SMPDB SMP:00540 NCBI chr 4:107,761,179...107,780,786
Ensembl chr 4:107,761,178...107,780,807 		JBrowse link
G Echs1 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial ISO SMPDB SMP:00540 NCBI chr 7:139,685,623...139,696,334
Ensembl chr 7:139,685,623...139,696,389 		JBrowse link
G Gcdh glutaryl-Coenzyme A dehydrogenase ISO SMPDB SMP:00540 NCBI chr 8:85,613,016...85,629,378
Ensembl chr 8:85,613,022...85,620,550 		JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO SMPDB SMP:00540 NCBI chr 5:30,324,421...30,359,978
Ensembl chr 5:30,323,302...30,360,160 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO SMPDB SMP:00540 NCBI chr 5:30,360,251...30,389,591
Ensembl chr 5:30,360,246...30,389,591 		JBrowse link
X-linked dominant chondrodysplasia punctata 2 pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-Coenzyme A acetyltransferase 2 ISO SMPDB SMP:00388 NCBI chr17:13,161,929...13,179,612
Ensembl chr17:13,161,777...13,179,634 		JBrowse link
G Cyp51 cytochrome P450, family 51 ISO SMPDB SMP:00388 NCBI chr 5:4,130,674...4,154,697
Ensembl chr 5:4,131,145...4,154,746 		JBrowse link
G Dhcr24 24-dehydrocholesterol reductase ISO SMPDB SMP:00388 NCBI chr 4:106,418,279...106,446,310
Ensembl chr 4:106,418,235...106,446,310 		JBrowse link
G Ebp EBP cholestenol delta-isomerase ISO SMPDB SMP:00388 NCBI chr  X:8,051,568...8,059,751
Ensembl chr  X:8,051,568...8,059,751 		JBrowse link
G Fdft1 farnesyl diphosphate farnesyl transferase 1 ISO SMPDB SMP:00388 NCBI chr14:63,382,599...63,419,136
Ensembl chr14:63,382,599...63,417,027 		JBrowse link
G Fdps farnesyl diphosphate synthetase ISO SMPDB SMP:00388 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 ISO SMPDB SMP:00388 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase ISO SMPDB SMP:00388 NCBI chr13:96,785,470...96,807,444
Ensembl chr13:96,785,475...96,807,444 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 ISO SMPDB SMP:00388 NCBI chr13:120,151,887...120,169,796
Ensembl chr13:120,151,915...120,169,796 		JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 ISO SMPDB SMP:00388 NCBI chr 1:169,777,109...169,796,757
Ensembl chr 1:169,777,104...169,796,810 		JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase ISO SMPDB SMP:00388 NCBI chr13:8,935,642...8,942,432
Ensembl chr13:8,935,537...8,942,487 		JBrowse link
G Lipa lysosomal acid lipase A ISO SMPDB SMP:00388 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Lss lanosterol synthase ISO SMPDB SMP:00388 NCBI chr10:76,367,303...76,392,973
Ensembl chr10:76,367,422...76,392,972 		JBrowse link
G Msmo1 methylsterol monoxygenase 1 ISO SMPDB SMP:00388 NCBI chr 8:65,171,157...65,186,822
Ensembl chr 8:65,171,173...65,186,826 		JBrowse link
G Mvd mevalonate (diphospho) decarboxylase ISO SMPDB SMP:00388 NCBI chr 8:123,160,335...123,170,161
Ensembl chr 8:123,160,340...123,170,161 		JBrowse link
G Mvk mevalonate kinase ISO SMPDB SMP:00388 NCBI chr 5:114,582,324...114,598,652
Ensembl chr 5:114,582,330...114,598,652 		JBrowse link
G Nsdhl NAD(P) dependent steroid dehydrogenase-like ISO SMPDB SMP:00388 NCBI chr  X:71,962,127...72,002,134
Ensembl chr  X:71,962,163...72,002,120 		JBrowse link
G Pmvk phosphomevalonate kinase ISO SMPDB SMP:00388 NCBI chr 3:89,361,848...89,376,321
Ensembl chr 3:89,361,848...89,376,320 		JBrowse link
G Sc5d sterol-C5-desaturase ISO SMPDB SMP:00388 NCBI chr 9:42,162,888...42,175,607
Ensembl chr 9:42,162,891...42,175,552 		JBrowse link
G Soat1 sterol O-acyltransferase 1 ISO SMPDB SMP:00388 NCBI chr 1:156,255,678...156,301,898
Ensembl chr 1:156,252,095...156,301,901 		JBrowse link
G Sqle squalene epoxidase ISO SMPDB SMP:00388 NCBI chr15:59,186,941...59,203,042
Ensembl chr15:59,186,926...59,203,041 		JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 ISO SMPDB SMP:00388 NCBI chr19:6,112,851...6,117,880
Ensembl chr19:6,112,851...6,118,403 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6072
    disease pathway 2094
      musculoskeletal disease pathway 174
        arthritis pathway + 119
        bone disease pathway + 22
        congenital limb deformities pathway + 22
        muscular disease pathway + 19
        very long-chain acyl-CoA dehydrogenase deficiency pathway 14
paths to the root