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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:lncRNA maturation pathway
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Accession:PW:0001580 term browser browse the term
Definition:Long non-coding RNA transcripts are subject to processing in a manner analogous to mRNA thereby they are capped and polyadenylated, and also frequently spliced.



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spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr 3:145,057,368...145,079,838 JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG rno:03040 NCBI chr15:32,072,121...32,117,004 JBrowse link
G Alyref Aly/REF export factor IEA KEGG rno:03040 NCBI chr10:105,871,424...105,875,076 JBrowse link
G Aqr aquarius intron-binding spliceosomal factor IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:100,874,987...100,945,026 JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:190,692,503...190,700,386 JBrowse link
G Bud31 BUD31 homolog IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:9,462,838...9,470,387 JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:119,513,007...119,564,802 JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG rno:03040 NCBI chr20:44,273,080...44,325,605 JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 9:15,564,949...15,603,453 JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG rno:03040 NCBI chr16:17,367,455...17,380,507 JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:133,338,593...133,354,329 JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:166,807,899...166,968,932 JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:11,305,401...11,316,326 JBrowse link
G Ddx23 DEAD-box helicase 23 IEA
ISO
KEGG
RGD
PMID:23454554 PMID:19239890 rno:03040, RGD:9686093, RGD:9686089 NCBI chr 7:131,676,636...131,693,917 JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr20:3,547,702...3,585,064 JBrowse link
G Ddx42 DEAD-box helicase 42 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr10:91,148,926...91,180,940 JBrowse link
G Ddx46 DEAD-box helicase 46 IEA
ISO
KEGG
RGD
PMID:23454554 rno:03040, RGD:9686093 NCBI chr17:8,947,237...8,993,705 JBrowse link
G Ddx5 DEAD-box helicase 5 IEA KEGG rno:03040 NCBI chr10:91,723,508...91,732,210 JBrowse link
G Dhx15 DEAH-box helicase 15 IEA KEGG rno:03040 NCBI chr14:58,787,147...58,825,083 JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO
KEGG
RGD
PMID:23454554 rno:03040, RGD:9686093 NCBI chr20:2,862,000...2,874,991 JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO
KEGG
RGD
PMID:23454554 rno:03040, RGD:9686093 NCBI chr19:37,512,893...37,530,135 JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO
KEGG
RGD
PMID:23454554 rno:03040, RGD:9686093 NCBI chr10:87,167,861...87,204,426 JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO
KEGG
RGD
PMID:23592432 PMID:23454554 rno:03040, RGD:9686090, RGD:9686093 NCBI chr10:87,804,893...87,852,181 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO
KEGG
RGD
PMID:15145352 rno:03040, RGD:9686404 NCBI chr10:105,047,567...105,057,561 JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:6,507,728...6,510,385 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:136,253,633...136,260,085 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:81,867,354...81,875,886 JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA KEGG rno:03040 NCBI chr 3:60,578,574...60,588,755 JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:36,358,004...36,363,898 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr15:24,779,593...24,809,213 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:9,918,630...9,938,072 JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:34,692,868...34,702,849 JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:25,616,400...25,625,814 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr17:6,269,302...6,280,429 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:93,226,373...93,239,084 JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 7:14,438,703...14,476,781 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:153,826,482...153,872,272 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr13:92,609,791...92,618,580 JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A IEA KEGG rno:03040 NCBI chr20:3,875,411...3,877,866 JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B IEA KEGG rno:03040 NCBI chr20:3,859,756...3,863,800 JBrowse link
G Hspa1l heat shock protein family A (Hsp70) member 1 like IEA KEGG rno:03040 NCBI chr20:3,848,843...3,855,571 JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 IEA KEGG rno:03040 NCBI chr 6:100,864,172...100,866,946 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Isy1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:120,276,535...120,297,227 JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr20:3,843,467...3,847,217 JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 4:124,021,023...124,027,269 JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr16:18,755,481...18,761,106 JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03040 NCBI chr 4:85,951,073...85,954,289 JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr19:29,098,254...29,112,858 JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:9,507,373...9,509,787 JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:47,306,259...47,312,125 JBrowse link
G Magoh mago homolog, exon junction complex subunit IEA KEGG rno:03040 NCBI chr 5:122,639,268...122,646,650 JBrowse link
G Magohb mago homolog B, exon junction complex subunit IEA
ISO
KEGG
RGD
PMID:15145352 rno:03040, RGD:9686404 NCBI chr 4:165,034,131...165,041,977 JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:144,639,819...144,814,395 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 IEA KEGG rno:03040 NCBI chr 5:65,211,632...65,244,532 JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG rno:03040 NCBI chr 4:120,530,100...120,532,107 JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG rno:03040 NCBI chr 7:115,258,609...115,265,174 JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z IEA KEGG rno:03040 NCBI chr11:68,831,847...68,851,798 JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:170,706,188...170,722,519 JBrowse link
G Pnn pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 6:76,758,138...76,766,451 JBrowse link
G Ppie peptidylprolyl isomerase E IEA
ISO
KEGG
RGD
PMID:23742842 PMID:18544344 rno:03040, RGD:9686094, RGD:9686376 NCBI chr 5:135,406,172...135,419,332 JBrowse link
G Ppig peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr 3:54,484,023...54,512,929 JBrowse link
G Ppih peptidylprolyl isomerase H IEA
ISO
KEGG
RGD
PMID:18544344 rno:03040, RGD:9686376 NCBI chr 5:132,906,324...132,924,341 JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 IEA
ISO
KEGG
RGD
PMID:23742842 PMID:18544344 rno:03040, RGD:9686094, RGD:9686376 NCBI chr20:7,302,292...7,322,349 JBrowse link
G Ppil2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr11:83,897,719...83,920,970 JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 9:59,966,405...59,980,147 JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG rno:03040 NCBI chr  X:14,603,516...14,608,091 JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO
KEGG
RGD
PMID:24452469 rno:03040, RGD:9686092 NCBI chr17:78,539,004...78,570,483 JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 1:216,966,104...216,977,549 JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 2:183,379,041...183,403,526 JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:65,575,887...65,587,561 JBrowse link
G Prpf38a pre-mRNA processing factor 38A IEA KEGG rno:03040 NCBI chr 5:123,312,461...123,324,160 JBrowse link
G Prpf38b pre-mRNA processing factor 38B IEA KEGG rno:03040 NCBI chr 2:196,553,224...196,562,271 JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 5:75,859,934...75,873,924 JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A IEA KEGG rno:03040 NCBI chr 3:37,625,585...37,689,859 JBrowse link
G Prpf6 pre-mRNA processing factor 6 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 3:189,084,465...189,148,705 JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO
KEGG
RGD
PMID:23592432 rno:03040, RGD:9686090 NCBI chr10:60,331,494...60,354,606 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:9,842,574...9,852,332 JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:207,812,659...207,874,019 JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG rno:03040 NCBI chr 7:109,663,490...109,674,443 JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:50,387,716...50,501,568 JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG rno:03040 NCBI chr17:71,846,941...71,863,834 JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr18:56,283,807...56,294,615 JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG rno:03040 NCBI chr 6:108,993,119...109,050,159 JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 IEA KEGG rno:03040 NCBI chr10:10,267,026...10,270,510 JBrowse link
G Rbm8a RNA binding motif protein 8A IEA
ISO
KEGG
RGD
PMID:15145352 rno:03040, RGD:9686404 NCBI chr 2:186,854,018...186,856,802 JBrowse link
G Rbmx RNA binding motif protein, X-linked IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr  X:140,342,544...140,352,121 JBrowse link
G Rbmxl1 Rbmx like 1 IEA KEGG rno:03040 NCBI chr19:46,312,176...46,315,802 JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr10:13,445,516...13,455,858 JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG rno:03040 NCBI chr 1:202,690,472...202,699,136 JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:42,859,026...42,887,041 JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:213,090,256...213,112,688 JBrowse link
G Sf3a1 splicing factor 3A subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr14:83,254,971...83,275,720 JBrowse link
G Sf3a2 splicing factor 3A subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 7:8,909,507...8,916,104 JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 5:136,967,713...136,987,345 JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 9:56,492,403...56,532,300 JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:202,570,423...202,590,774 JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr19:38,782,749...38,820,271 JBrowse link
G Sf3b4 splicing factor 3B subunit 4 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 2:183,732,791...183,737,545 JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:7,357,040...7,357,752 JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:33,545,495...33,554,537 JBrowse link
G Slu7 SLU7 homolog, splicing factor IEA
ISO
KEGG
RGD
PMID:24452469 rno:03040, RGD:9686092 NCBI chr10:27,908,325...27,923,784 JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG rno:03040 NCBI chr 1:252,389,675...252,400,749 JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23592432 PMID:23454554 RGD:9686090, RGD:9686093 NCBI chr 3:134,882,173...134,911,512 JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG rno:03040 NCBI chr 4:120,681,054...120,691,343 JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG rno:03040 NCBI chr 5:142,700,632...142,733,776 JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEA
ISO
KEGG
RGD
PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:104,992,518...105,012,851 JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO
KEGG
RGD
PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:82,481,770...82,490,540 JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:129,051,492...129,065,114 JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 3:137,824,870...137,832,479 JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 IEA
ISO
KEGG
RGD
PMID:17537823 rno:03040, RGD:9686091 NCBI chr 3:150,852,814...150,862,364 JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C IEA
ISO
KEGG
RGD
PMID:23592432 rno:03040, RGD:9686090 NCBI chr20:5,888,453...5,906,638 JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr18:1,696,838...1,707,400 JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 1:87,926,030...87,929,259 JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr20:13,130,112...13,145,947 JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr13:45,050,986...45,057,231 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:28,130,427...28,137,129 JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:120,369,676...120,377,263 JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 7:115,445,415...115,451,008 JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 IEA KEGG rno:03040 NCBI chr  X:150,624,087...150,624,525 JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 6:112,826,374...112,850,459 JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 5:147,559,515...147,591,895 JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:12,815,471...12,848,750 JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr12:39,998,975...40,158,897 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr10:73,335,519...73,342,549 JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:148,088,759...148,102,964 JBrowse link
G Srsf11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:247,074,623...247,101,460 JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:47,606,526...47,631,509 JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:102,052,158...102,055,365 JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:7,093,529...7,103,517 JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:144,060,981...144,090,798 JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:100,605,165...100,610,192 JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 3:151,589,546...151,594,869 JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:20,564,035...20,571,205 JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr12:41,278,225...41,284,502 JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr 5:152,440,171...152,448,094 JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 8:98,282,358...98,315,412 JBrowse link
G Tcerg1 transcription elongation regulator 1 IEA KEGG rno:03040 NCBI chr18:34,756,558...34,817,441 JBrowse link
G Thoc1 THO complex subunit 1 IEA KEGG rno:03040 NCBI chr18:983,824...1,019,123 JBrowse link
G Thoc2 THO complex subunit 2 IEA KEGG rno:03040 NCBI chr  X:120,634,966...120,749,569 JBrowse link
G Thoc3 THO complex subunit 3 IEA KEGG rno:03040 NCBI chr17:10,143,184...10,152,375 JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:183,008,358...183,045,092 JBrowse link
G Tra2a transformer 2 alpha IEA KEGG rno:03040 NCBI chr 4:79,551,699...79,570,621 JBrowse link
G Tra2b transformer 2 beta IEA KEGG rno:03040 NCBI chr11:78,788,880...78,807,252 JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:73,659,107...73,674,893 JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr20:9,742,904...9,753,840 JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 IEA
ISO
KEGG
RGD
PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:77,789,752...77,807,307 JBrowse link
G U2surp U2 snRNP-associated SURP domain containing IEA KEGG rno:03040 NCBI chr 8:104,898,580...104,963,642 JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG rno:03040 NCBI chr 4:104,373,948...104,406,359 JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG rno:03040 NCBI chr 4:169,680,984...169,694,431 JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO
KEGG
RGD
PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:1,667,672...1,679,702 JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG rno:03040 NCBI chr18:28,409,606...28,414,241 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3866
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        RNA processing pathway 294
          RNA maturation pathway 196
            lncRNA maturation pathway 152
              lncRNA capping pathway 0
              lncRNA polyadenylation pathway 0
              spliceosome pathway 152
Path 2
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3866
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        transcription pathway 1059
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                lncRNA maturation pathway 152
                  lncRNA capping pathway 0
                  lncRNA polyadenylation pathway 0
                  spliceosome pathway 152
paths to the root