Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:lncRNA maturation pathway
go back to main search page
Accession:PW:0001580 term browser browse the term
Definition:Long non-coding RNA transcripts are subject to processing in a manner analogous to mRNA thereby they are capped and polyadenylated, and also frequently spliced.



show annotations for term's descendants           Sort by:
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor homolog ISO RGD PMID:23592432 RGD:9686090 NCBI chr 2:156,389,496...156,410,892
Ensembl chr 2:156,389,504...156,410,892
JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG mmu:03040 NCBI chr14:54,879,618...54,924,422
Ensembl chr14:54,879,618...54,924,388
JBrowse link
G Alyreffm10 Aly/REF export factor family member 10 IEA KEGG mmu:03040 NCBI chr10:104,029,903...104,032,383
Ensembl chr10:104,029,903...104,032,383
JBrowse link
G Alyreffm2 Aly/REF export factor family member 2 IEA KEGG mmu:03040 NCBI chr 1:31,326,164...31,327,132
Ensembl chr 1:31,326,026...31,326,787
JBrowse link
G Aqr aquarius IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:113,931,642...114,005,788
Ensembl chr 2:113,931,651...114,017,505
JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:103,078,971...103,086,479
Ensembl chr 3:103,078,971...103,086,482
JBrowse link
G Bud31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 5:145,077,186...145,084,888
Ensembl chr 5:145,077,172...145,084,888
JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:110,483,376...110,540,661
Ensembl chr 9:110,485,571...110,540,674
JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG mmu:03040 NCBI chr10:40,707,617...40,759,139
Ensembl chr10:40,707,617...40,759,307
JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr17:45,702,809...45,744,633
Ensembl chr17:45,702,810...45,744,663
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG mmu:03040 NCBI chr 8:73,214,327...73,229,077
Ensembl chr 8:73,214,333...73,229,070
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:145,759,402...145,776,620
Ensembl chr 2:145,759,399...145,776,934
JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:157,579,321...157,733,823
Ensembl chr 2:157,579,321...157,733,534
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:14,411,876...14,421,920
Ensembl chr 9:14,411,913...14,421,873
JBrowse link
G Ddx23 DEAD box helicase 23 IEA
ISO
KEGG
RGD
PMID:23454554 PMID:19239890 mmu:03040, RGD:9686093, RGD:9686089 NCBI chr15:98,543,012...98,560,808
Ensembl chr15:98,543,015...98,560,775
JBrowse link
G Ddx39b DEAD box helicase 39b IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:35,460,722...35,472,683
Ensembl chr17:35,460,722...35,472,683
JBrowse link
G Ddx42 DEAD box helicase 42 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:106,107,715...106,139,966
Ensembl chr11:106,107,752...106,139,965
JBrowse link
G Ddx46 DEAD box helicase 46 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr13:55,782,790...55,829,080
Ensembl chr13:55,782,841...55,829,069
JBrowse link
G Ddx5 DEAD box helicase 5 IEA KEGG mmu:03040 NCBI chr11:106,671,181...106,680,011
Ensembl chr11:106,671,181...106,680,011
JBrowse link
G Dhx15 DEAH-box helicase 15 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 5:52,307,545...52,347,888
Ensembl chr 5:52,307,545...52,347,856
JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:36,190,657...36,203,562
Ensembl chr17:36,190,711...36,203,562
JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 8:110,274,631...110,292,493
Ensembl chr 8:110,274,643...110,292,493
JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr11:101,623,782...101,658,184
Ensembl chr11:101,623,745...101,658,184
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO
KEGG
RGD
PMID:23592432 PMID:23454554 mmu:03040, RGD:9686090, RGD:9686093 NCBI chr11:102,729,298...102,771,999
Ensembl chr11:102,729,299...102,771,811
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915
JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 IEA KEGG mmu:03040 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981
JBrowse link
G Gm10146 predicted gene 10146 IEA KEGG mmu:03040 NCBI chr10:78,229,138...78,229,590
Ensembl chr10:78,229,154...78,229,462
JBrowse link
G Gm11847 predicted gene 11847 IEA KEGG mmu:03040 NCBI chr 4:12,232,772...12,238,024
Ensembl chr 4:12,232,833...12,233,951
JBrowse link
G Gm12183 predicted gene 12183 IEA KEGG mmu:03040 NCBI chr11:48,642,436...48,644,703
Ensembl chr11:48,642,694...48,644,541
JBrowse link
G Gm12966 predicted gene 12966 IEA KEGG mmu:03040 NCBI chr 4:129,792,742...129,794,228
Ensembl chr 4:129,792,886...129,793,695
JBrowse link
G Gm5576 predicted pseudogene 5576 IEA KEGG mmu:03040 NCBI chr 6:78,192,861...78,194,152
Ensembl chr 6:78,192,861...78,194,096
JBrowse link
G Gm5616 predicted gene 5616 IEA KEGG mmu:03040 NCBI chr 9:48,361,591...48,362,846
Ensembl chr 9:48,361,700...48,362,083
JBrowse link
G Gm8186 predicted gene 8186 IEA KEGG mmu:03040 NCBI chr17:26,317,846...26,318,231
Ensembl chr17:26,317,965...26,318,195
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:58,273,693...58,276,370
Ensembl chr13:58,273,693...58,276,370
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119
JBrowse link
G Hnrnpa1l2-ps2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 IEA KEGG mmu:03040 NCBI chr15:22,713,906...22,715,070
Ensembl chr15:22,713,954...22,714,916
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:51,437,414...51,448,054
Ensembl chr 6:51,437,912...51,446,874
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 2:75,489,416...75,499,751
Ensembl chr 2:75,489,605...75,499,751
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:51,490,927...51,497,708
Ensembl chr11:51,490,927...51,497,674
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr14:52,310,834...52,341,462
Ensembl chr14:52,310,834...52,341,485
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:100,103,794...100,126,926
Ensembl chr 5:100,103,794...100,126,797
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:50,266,084...50,277,355
Ensembl chr11:50,267,817...50,277,355
JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:62,850,443...62,859,764
Ensembl chr10:62,850,443...62,859,996
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 7:28,507,971...28,521,693
Ensembl chr 7:28,507,966...28,521,691
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr17:33,865,207...33,904,432
Ensembl chr17:33,865,207...33,905,834
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:136,038,230...136,086,758
Ensembl chr 4:136,038,253...136,086,758
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362
JBrowse link
G Hspa1a heat shock protein 1A IEA KEGG mmu:03040 NCBI chr17:35,188,335...35,191,132
Ensembl chr17:35,188,166...35,191,132
JBrowse link
G Hspa1b heat shock protein 1B IEA KEGG mmu:03040 NCBI chr17:35,175,405...35,178,214
Ensembl chr17:35,175,412...35,178,214
JBrowse link
G Hspa1l heat shock protein 1-like IEA KEGG mmu:03040 NCBI chr17:35,191,679...35,198,204
Ensembl chr17:35,191,679...35,198,261
JBrowse link
G Hspa2 heat shock protein 2 IEA KEGG mmu:03040 NCBI chr12:76,450,688...76,453,712
Ensembl chr12:76,450,950...76,453,712
JBrowse link
G Hspa8 heat shock protein 8 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:40,712,572...40,716,498
Ensembl chr 9:40,712,280...40,721,383
JBrowse link
G Isy1 ISY1 splicing factor homolog IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 6:87,795,429...87,815,723
Ensembl chr 6:87,791,251...87,815,780
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr17:35,200,830...35,204,867
Ensembl chr17:35,200,838...35,204,867
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 6:91,493,017...91,499,602
Ensembl chr 6:91,492,910...91,499,607
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 8:71,124,663...71,131,402
Ensembl chr 8:71,125,898...71,131,402
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 6:56,678,048...56,681,684
Ensembl chr 6:56,678,048...56,681,695
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 8:79,531,497...79,547,781
Ensembl chr 8:79,531,494...79,547,769
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:80,688,659...80,691,043
Ensembl chr10:80,688,655...80,691,043
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 6:18,848,634...18,854,051
Ensembl chr 6:18,848,578...18,855,750
JBrowse link
G Magoh mago homolog, exon junction complex core component IEA KEGG mmu:03040 NCBI chr 4:107,736,952...107,744,621
Ensembl chr 4:107,736,952...107,744,621
JBrowse link
G Magohb mago homolog B, exon junction complex core component IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 6:131,261,351...131,270,207
Ensembl chr 6:131,261,351...131,270,207
JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:60,380,209...60,537,171
Ensembl chr 3:60,380,251...60,537,171
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 IEA KEGG mmu:03040 NCBI chr16:31,767,364...31,777,290
Ensembl chr16:31,767,331...31,780,599
JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG mmu:03040 NCBI chr 6:86,501,462...86,503,171
Ensembl chr 6:86,501,474...86,503,303
JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG mmu:03040 NCBI chr15:81,748,717...81,756,093
Ensembl chr15:81,748,721...81,756,112
JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:82,962,845...82,979,598
Ensembl chr 3:82,962,829...82,979,662
JBrowse link
G Pnn pinin ISO RGD PMID:15145352 RGD:9686404 NCBI chr12:59,113,705...59,120,803
Ensembl chr12:59,113,670...59,120,784
JBrowse link
G Ppie peptidylprolyl isomerase E (cyclophilin E) IEA
ISO
KEGG
RGD
PMID:23742842 PMID:18544344 mmu:03040, RGD:9686094, RGD:9686376 NCBI chr 4:123,020,907...123,033,783
Ensembl chr 4:123,020,908...123,033,744
JBrowse link
G Ppig peptidyl-prolyl isomerase G (cyclophilin G) ISO RGD PMID:18544344 RGD:9686376 NCBI chr 2:69,553,152...69,584,356
Ensembl chr 2:69,552,889...69,584,356
JBrowse link
G Ppih peptidyl prolyl isomerase H IEA
ISO
KEGG
RGD
PMID:18544344 mmu:03040, RGD:9686376 NCBI chr 4:119,157,207...119,177,720
Ensembl chr 4:119,157,207...119,177,743
JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 IEA
ISO
KEGG
RGD
PMID:23742842 PMID:18544344 mmu:03040, RGD:9686094, RGD:9686376 NCBI chr17:29,469,809...29,482,945
Ensembl chr17:29,469,777...29,483,160
JBrowse link
G Ppil2 peptidylprolyl isomerase (cyclophilin)-like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr16:16,904,419...16,929,126
Ensembl chr16:16,904,419...16,929,121
JBrowse link
G Ppil3 peptidylprolyl isomerase (cyclophilin)-like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 1:58,470,152...58,484,878
Ensembl chr 1:58,470,153...58,484,645
JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG mmu:03040 NCBI chr  X:7,760,759...7,765,469
Ensembl chr  X:7,760,758...7,765,508
JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO
KEGG
RGD
PMID:24452469 mmu:03040, RGD:9686092 NCBI chr 2:4,626,869...4,656,946
Ensembl chr 2:4,626,869...4,656,924
JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr19:10,872,595...10,886,923
Ensembl chr19:10,872,595...10,886,923
JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 3:95,737,436...95,763,197
Ensembl chr 3:95,737,436...95,763,197
JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:3,632,984...3,645,484
Ensembl chr 7:3,632,984...3,645,485
JBrowse link
G Prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A IEA KEGG mmu:03040 NCBI chr 4:108,422,064...108,436,533
Ensembl chr 4:108,420,369...108,436,533
JBrowse link
G Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B IEA KEGG mmu:03040 NCBI chr 3:108,810,121...108,819,055
Ensembl chr 3:108,810,121...108,819,043
JBrowse link
G Prpf4 pre-mRNA processing factor 4 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 4:62,327,002...62,345,227
Ensembl chr 4:62,327,034...62,345,227
JBrowse link
G Prpf40a pre-mRNA processing factor 40A IEA KEGG mmu:03040 NCBI chr 2:53,024,714...53,081,450
Ensembl chr 2:53,024,716...53,081,714
JBrowse link
G Prpf40b pre-mRNA processing factor 40B IEA KEGG mmu:03040 NCBI chr15:99,192,957...99,214,899
Ensembl chr15:99,192,968...99,214,899
JBrowse link
G Prpf6 pre-mRNA splicing factor 6 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 2:181,243,112...181,297,454
Ensembl chr 2:181,233,661...181,297,453
JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr11:75,377,603...75,400,273
Ensembl chr11:75,377,642...75,400,275
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr10:79,690,502...79,700,269
Ensembl chr10:79,690,261...79,700,605
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:119,512,390...119,578,296
Ensembl chr 3:119,512,391...119,578,115
JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG mmu:03040 NCBI chr15:75,942,031...75,954,386
Ensembl chr15:75,942,031...75,952,773
JBrowse link
G Qki quaking, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr17:10,425,480...10,538,706
Ensembl chr17:10,421,530...10,538,783
JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG mmu:03040 NCBI chr 2:11,590,250...11,608,061
Ensembl chr 2:11,590,248...11,608,964
JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr18:60,693,858...60,705,801
Ensembl chr18:60,693,808...60,705,882
JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG mmu:03040 NCBI chr12:83,678,990...83,729,901
Ensembl chr12:83,678,010...83,729,897
JBrowse link
G Rbm8a RNA binding motif protein 8a IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 3:96,537,244...96,541,107
Ensembl chr 3:96,537,249...96,541,107
JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 IEA KEGG mmu:03040 NCBI chr 1:175,805,784...175,806,509
Ensembl chr 1:175,805,343...175,806,680
JBrowse link
G Rbmx RNA binding motif protein, X chromosome IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr  X:56,428,708...56,438,405
Ensembl chr  X:56,428,890...56,438,396
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr17:24,633,620...24,644,872
Ensembl chr17:24,633,539...24,644,875
JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 IEA KEGG mmu:03040 NCBI chr19:5,427,551...5,438,731
Ensembl chr19:5,427,551...5,438,731
JBrowse link
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 5:113,880,505...113,910,461
Ensembl chr 5:113,880,507...113,910,571
JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:6,413,952...6,428,060
Ensembl chr19:6,413,720...6,428,060
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:4,110,354...4,132,541
Ensembl chr11:4,110,350...4,132,541
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:80,634,569...80,640,756
Ensembl chr10:80,634,032...80,640,758
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 4:124,602,966...124,626,234
Ensembl chr 4:124,608,569...124,626,253
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 1:55,024,328...55,066,660
Ensembl chr 1:55,024,328...55,066,640
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr19:5,323,949...5,345,485
Ensembl chr19:5,323,960...5,345,483
JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 8:111,537,123...111,573,578
Ensembl chr 8:111,536,871...111,573,419
JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 3:96,079,822...96,084,880
Ensembl chr 3:96,079,648...96,084,880
JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:12,884,194...12,884,927
Ensembl chr10:12,881,087...12,884,927
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr12:4,867,608...4,877,659
Ensembl chr12:4,867,544...4,877,659
JBrowse link
G Slu7 SLU7 splicing factor homolog (S. cerevisiae) IEA
ISO
KEGG
RGD
PMID:24452469 mmu:03040, RGD:9686092 NCBI chr11:43,324,550...43,338,809
Ensembl chr11:43,324,571...43,338,808
JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG mmu:03040 NCBI chr19:53,367,603...53,379,065
Ensembl chr19:53,367,821...53,379,009
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein 200 (U5) IEA
ISO
KEGG
RGD
PMID:23592432 PMID:23454554 mmu:03040, RGD:9686090, RGD:9686093 NCBI chr 2:127,050,306...127,082,373
Ensembl chr 2:127,050,306...127,082,371
JBrowse link
G Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) IEA KEGG mmu:03040 NCBI chr 6:86,652,151...86,661,473
Ensembl chr 6:86,652,133...86,661,504
JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) IEA KEGG mmu:03040 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein 70 (U1) IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:45,025,878...45,045,177
Ensembl chr 7:45,025,877...45,045,166
JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:26,886,431...26,895,696
Ensembl chr 7:26,886,430...26,895,696
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 7:65,710,084...65,724,335
Ensembl chr 7:65,708,751...65,724,335
JBrowse link
G Snrpb small nuclear ribonucleoprotein B IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323
JBrowse link
G Snrpb2 U2 small nuclear ribonucleoprotein B IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 2:142,904,989...142,913,972
Ensembl chr 2:142,904,959...142,914,773
JBrowse link
G Snrpc U1 small nuclear ribonucleoprotein C IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr17:28,059,002...28,070,942
Ensembl chr17:28,057,124...28,070,942
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr18:10,617,796...10,628,230
Ensembl chr18:10,617,775...10,642,079
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 7:18,883,370...18,886,659
Ensembl chr 7:18,883,647...18,887,467
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr10:75,353,852...75,371,300
Ensembl chr10:75,353,385...75,373,215
JBrowse link
G Snrpe small nuclear ribonucleoprotein E IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 1:133,531,609...133,538,018
Ensembl chr 1:133,531,609...133,538,029
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr10:93,418,891...93,425,520
Ensembl chr10:93,418,891...93,425,568
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 6:86,348,522...86,355,884
Ensembl chr 6:86,348,286...86,356,310
JBrowse link
G Snu13 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr15:81,925,546...81,931,799
Ensembl chr15:81,924,726...81,931,799
JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044
JBrowse link
G Srrm1 serine/arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 4:135,047,795...135,080,787
Ensembl chr 4:135,047,795...135,080,632
JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:24,009,501...24,043,715
Ensembl chr17:24,009,506...24,043,715
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 5:116,577,331...116,729,882
Ensembl chr 5:116,577,334...116,729,876
JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr11:87,937,325...87,944,583
Ensembl chr11:87,938,199...87,944,581
JBrowse link
G Srsf10 serine and arginine-rich splicing factor 10 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 4:135,582,454...135,597,219
Ensembl chr 4:135,583,058...135,597,219
JBrowse link
G Srsf11 serine and arginine-rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:157,716,552...157,742,304
Ensembl chr 3:157,716,110...157,742,276
JBrowse link
G Srsf12 serine and arginine-rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:33,208,991...33,233,344
Ensembl chr 4:33,208,991...33,233,340
JBrowse link
G Srsf2 serine and arginine-rich splicing factor 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:116,740,723...116,744,511
Ensembl chr11:116,740,727...116,743,920
JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347
JBrowse link
G Srsf4 serine and arginine-rich splicing factor 4 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 4:131,600,841...131,629,036
Ensembl chr 4:131,600,928...131,629,017
JBrowse link
G Srsf5 serine and arginine-rich splicing factor 5 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr12:80,992,308...80,997,277
Ensembl chr12:80,992,278...80,997,281
JBrowse link
G Srsf6 serine and arginine-rich splicing factor 6 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 2:162,773,428...162,779,041
Ensembl chr 2:162,773,448...162,779,041
JBrowse link
G Srsf7 serine and arginine-rich splicing factor 7 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr17:80,507,509...80,514,734
Ensembl chr17:80,507,509...80,514,736
JBrowse link
G Srsf9 serine and arginine-rich splicing factor 9 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:17537823 mmu:03040, RGD:9686089, RGD:9686091 NCBI chr 5:115,465,236...115,471,139
Ensembl chr 5:115,465,236...115,471,139
JBrowse link
G Syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 4:134,658,291...134,664,848
Ensembl chr 4:134,658,209...134,664,859
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:88,331,417...88,364,645
Ensembl chr 9:88,329,062...88,364,627
JBrowse link
G Tcerg1 transcription elongation regulator 1 (CA150) IEA KEGG mmu:03040 NCBI chr18:42,644,369...42,708,850
Ensembl chr18:42,644,552...42,708,858
JBrowse link
G Thoc1 THO complex 1 IEA KEGG mmu:03040 NCBI chr18:9,958,176...9,995,486
Ensembl chr18:9,957,906...9,995,489
JBrowse link
G Thoc2 THO complex 2 IEA KEGG mmu:03040 NCBI chr  X:40,883,869...41,000,878
Ensembl chr  X:40,883,868...41,009,551
JBrowse link
G Thoc3 THO complex 3 IEA KEGG mmu:03040 NCBI chr13:54,606,650...54,616,653
Ensembl chr13:54,606,650...54,616,662
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:128,041,496...128,063,450
Ensembl chr 7:128,041,501...128,063,441
JBrowse link
G Tra2a transformer 2 alpha IEA KEGG mmu:03040 NCBI chr 6:49,220,855...49,241,182
Ensembl chr 6:49,220,858...49,240,967
JBrowse link
G Tra2b transformer 2 beta IEA KEGG mmu:03040 NCBI chr16:22,063,302...22,084,755
Ensembl chr16:22,063,299...22,084,755
JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:80,250,041...80,269,066
Ensembl chr18:80,249,980...80,255,956
Ensembl chr18:80,249,980...80,255,956
JBrowse link
G U2af1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr17:31,866,055...31,878,122
Ensembl chr17:31,866,055...31,877,866
JBrowse link
G U2af2 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:5,063,884...5,082,937
Ensembl chr 7:5,065,142...5,082,937
JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG mmu:03040 NCBI chr 6:72,295,749...72,322,190
Ensembl chr 6:72,295,661...72,322,167
JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG mmu:03040 NCBI chr 6:136,790,652...136,805,214
Ensembl chr 6:136,790,652...136,805,231
JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316
JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG mmu:03040 NCBI chr18:36,926,976...36,932,713
Ensembl chr18:36,926,929...36,932,719
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6074
    regulatory pathway 3686
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1656
        RNA processing pathway 256
          RNA maturation pathway 203
            lncRNA maturation pathway 159
              lncRNA capping pathway 0
              lncRNA polyadenylation pathway 0
              spliceosome pathway 159
Path 2
Term Annotations click to browse term
  pathway 6074
    regulatory pathway 3686
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1656
        transcription pathway 1069
          RNA polymerase transcription pathway 395
            eukaryotic RNA polymerase transcription pathway 395
              RNA polymerase II transcription pathway 326
                lncRNA maturation pathway 159
                  lncRNA capping pathway 0
                  lncRNA polyadenylation pathway 0
                  spliceosome pathway 159
paths to the root