Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:lncRNA maturation pathway
go back to main search page
Accession:PW:0001580 term browser browse the term
Definition:Long non-coding RNA transcripts are subject to processing in a manner analogous to mRNA thereby they are capped and polyadenylated, and also frequently spliced.



show annotations for term's descendants           Sort by:
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor TAS RGD PMID:23592432 RGD:9686090 NCBI chr20:36,236,478...36,256,933
Ensembl chr20:36,236,131...36,270,918
JBrowse link
G ACIN1 apoptotic chromatin condensation inducer 1 IEA KEGG hsa:03040 NCBI chr14:23,058,564...23,095,614
Ensembl chr14:23,058,564...23,095,614
JBrowse link
G AQR aquarius intron-binding spliceosomal factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr15:34,851,782...34,969,742
Ensembl chr15:34,851,782...34,969,742
JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 1:114,567,557...114,581,615
Ensembl chr 1:114,567,557...114,581,629
JBrowse link
G BUD31 BUD31 homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 7:99,408,969...99,419,616
Ensembl chr 7:99,408,641...99,419,616
JBrowse link
G CCDC12 coiled-coil domain containing 12 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 3:46,921,730...46,981,994
Ensembl chr 3:46,916,634...46,982,010
JBrowse link
G CDC40 cell division cycle 40 IEA KEGG hsa:03040 NCBI chr 6:110,180,427...110,232,232
Ensembl chr 6:110,180,141...110,254,275
JBrowse link
G CDC5L cell division cycle 5 like IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 6:44,387,706...44,450,425
Ensembl chr 6:44,387,706...44,450,425
JBrowse link
G CHERP calcium homeostasis endoplasmic reticulum protein IEA KEGG hsa:03040 NCBI chr19:16,517,894...16,542,437
Ensembl chr19:16,517,894...16,542,437
JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr20:20,034,368...20,056,046
Ensembl chr20:20,034,368...20,056,046
JBrowse link
G CTNNBL1 catenin beta like 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr20:37,694,030...37,872,118
Ensembl chr20:37,694,030...37,872,129
JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:94,962,620...94,973,556
Ensembl chr11:94,962,620...94,973,586
JBrowse link
G DDX23 DEAD-box helicase 23 IEA
TAS
KEGG
RGD
PMID:19239890 PMID:23454554 hsa:03040, RGD:9686089, RGD:9686093 NCBI chr12:48,829,756...48,852,163
Ensembl chr12:48,829,756...48,852,842
JBrowse link
G DDX39B DExD-box helicase 39B IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 6:31,530,226...31,542,003
Ensembl chr 6:31,530,219...31,542,448
JBrowse link
G DDX42 DEAD-box helicase 42 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr17:63,773,800...63,819,317
Ensembl chr17:63,773,603...63,819,317
JBrowse link
G DDX46 DEAD-box helicase 46 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 5:134,758,779...134,831,121
Ensembl chr 5:134,758,771...134,855,133
JBrowse link
G DDX5 DEAD-box helicase 5 IEA KEGG hsa:03040 NCBI chr17:64,498,254...64,506,866
Ensembl chr17:64,498,254...64,508,199
JBrowse link
G DHX15 DEAH-box helicase 15 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 4:24,527,475...24,584,554
Ensembl chr 4:24,517,441...24,584,554
JBrowse link
G DHX16 DEAH-box helicase 16 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 6:30,653,127...30,673,006
Ensembl chr 6:30,653,119...30,673,006
JBrowse link
G DHX38 DEAH-box helicase 38 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr16:72,093,847...72,112,912
Ensembl chr16:72,093,613...72,112,912
JBrowse link
G DHX8 DEAH-box helicase 8 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr17:43,483,975...43,544,799
Ensembl chr17:43,483,865...43,610,338
JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 IEA
TAS
KEGG
RGD
PMID:23454554 PMID:23592432 hsa:03040, RGD:9686093, RGD:9686090 NCBI chr17:44,849,948...44,899,445
Ensembl chr17:44,849,948...44,899,445
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr17:80,134,369...80,147,128
Ensembl chr17:80,134,369...80,147,151
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:137,745,651...137,754,363
Ensembl chr 5:137,745,651...137,754,363
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:54,280,726...54,287,087
Ensembl chr12:54,280,193...54,287,088
JBrowse link
G HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1 like 2 IEA KEGG hsa:03040 NCBI chr13:52,617,525...52,643,773
Ensembl chr13:52,642,431...52,643,773
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 7:26,189,927...26,200,746
Ensembl chr 7:26,171,151...26,201,529
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:177,212,794...177,223,959
Ensembl chr 2:177,212,694...177,226,106
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:178,204,533...178,211,163
Ensembl chr 5:178,204,533...178,211,163
JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D TAS RGD PMID:17537823 RGD:9686091 NCBI chr 4:82,352,498...82,373,991
Ensembl chr 4:82,352,498...82,374,503
JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:179,614,178...179,634,784
Ensembl chr 5:179,614,178...179,634,784
JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 TAS RGD PMID:17537823 RGD:9686091 NCBI chr10:68,331,693...68,343,196
Ensembl chr10:68,331,174...68,343,193
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 9:83,968,083...83,980,615
Ensembl chr 9:83,968,083...83,980,631
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L TAS RGD PMID:17537823 RGD:9686091 NCBI chr19:38,836,370...38,852,347
Ensembl chr19:38,836,370...38,852,347
JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:8,444,975...8,489,114
Ensembl chr19:8,444,767...8,489,114
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R TAS RGD PMID:17537823 RGD:9686091 NCBI chr 1:23,304,688...23,344,284
Ensembl chr 1:23,303,771...23,344,336
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:244,850,297...244,864,543
Ensembl chr 1:244,840,638...244,864,560
JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A IEA KEGG hsa:03040 NCBI chr 6:31,815,543...31,817,942
Ensembl chr 6:31,815,543...31,817,946
JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B IEA KEGG hsa:03040 NCBI chr 6:31,827,738...31,830,254
Ensembl chr 6:31,827,738...31,830,254
JBrowse link
G HSPA1L heat shock protein family A (Hsp70) member 1 like IEA KEGG hsa:03040 NCBI chr 6:31,809,619...31,815,283
Ensembl chr 6:31,809,619...31,815,283
JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 IEA KEGG hsa:03040 NCBI chr14:64,535,905...64,543,237
Ensembl chr14:64,535,905...64,546,173
JBrowse link
G HSPA6 heat shock protein family A (Hsp70) member 6 IEA KEGG hsa:03040 NCBI chr 1:161,524,540...161,526,894
Ensembl chr 1:161,524,540...161,526,894
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:123,057,489...123,062,462
Ensembl chr11:123,057,489...123,063,230
JBrowse link
G ISY1 ISY1 splicing factor homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 3:129,127,415...129,161,063
Ensembl chr 3:129,127,415...129,161,063
JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 6:31,797,396...31,806,966
Ensembl chr 6:31,797,396...31,806,966
JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 3:14,178,817...14,201,122
Ensembl chr 3:14,178,817...14,201,122
JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:18,306,236...18,323,076
Ensembl chr19:18,306,236...18,323,112
JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 7:32,485,338...32,495,283
Ensembl chr 7:32,485,338...32,495,283
JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 4:146,175,718...146,191,535
Ensembl chr 4:146,175,703...146,200,000
JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:2,321,521...2,328,586
Ensembl chr19:2,321,520...2,328,611
JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 7:118,184,164...118,204,035
Ensembl chr 7:118,184,144...118,204,035
JBrowse link
G MAGOH mago homolog, exon junction complex subunit IEA KEGG hsa:03040 NCBI chr 1:53,226,900...53,238,518
Ensembl chr 1:53,226,900...53,238,518
JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr12:10,599,524...10,613,609
Ensembl chr12:10,604,190...10,613,609
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 TAS RGD PMID:23498935 RGD:9686382 NCBI chr 3:152,243,632...152,465,780
Ensembl chr 3:152,243,828...152,465,780
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 IEA KEGG hsa:03040 NCBI chr 9:97,633,821...97,673,748
Ensembl chr 9:97,633,668...97,673,748
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 IEA KEGG hsa:03040 NCBI chr 3:196,935,406...196,942,528
Ensembl chr 3:196,935,402...196,942,594
JBrowse link
G PCBP1 poly(rC) binding protein 1 IEA KEGG hsa:03040 NCBI chr 2:70,087,477...70,089,203
Ensembl chr 2:70,087,477...70,089,203
JBrowse link
G PHF5A PHD finger protein 5A IEA KEGG hsa:03040 NCBI chr22:41,459,717...41,468,692
Ensembl chr22:41,459,717...41,468,692
JBrowse link
G PLRG1 pleiotropic regulator 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 4:154,535,005...154,550,400
Ensembl chr 4:154,535,005...154,550,400
JBrowse link
G PNN pinin, desmosome associated protein TAS RGD PMID:15145352 RGD:9686404 NCBI chr14:39,175,254...39,183,220
Ensembl chr14:39,175,183...39,183,220
JBrowse link
G PPIE peptidylprolyl isomerase E IEA
TAS
KEGG
RGD
PMID:18544344 PMID:23742842 hsa:03040, RGD:9686376, RGD:9686094 NCBI chr 1:39,738,882...39,763,914
Ensembl chr 1:39,692,182...39,763,914
JBrowse link
G PPIG peptidylprolyl isomerase G TAS RGD PMID:18544344 RGD:9686376 NCBI chr 2:169,584,351...169,641,406
Ensembl chr 2:169,584,342...169,641,406
JBrowse link
G PPIH peptidylprolyl isomerase H IEA
TAS
KEGG
RGD
PMID:18544344 hsa:03040, RGD:9686376 NCBI chr 1:42,658,423...42,681,654
Ensembl chr 1:42,658,335...42,676,758
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 IEA
TAS
KEGG
RGD
PMID:18544344 PMID:23742842 hsa:03040, RGD:9686376, RGD:9686094 NCBI chr 6:36,854,829...36,874,803
Ensembl chr 6:36,854,827...36,874,803
JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 TAS RGD PMID:18544344 RGD:9686376 NCBI chr22:21,666,012...21,700,015
Ensembl chr22:21,666,000...21,700,015
JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 TAS RGD PMID:18544344 RGD:9686376 NCBI chr 2:200,870,907...200,889,291
Ensembl chr 2:200,870,907...200,889,303
JBrowse link
G PQBP1 polyglutamine binding protein 1 IEA KEGG hsa:03040 NCBI chr  X:48,897,930...48,903,143
Ensembl chr  X:48,890,197...48,903,402
JBrowse link
G PRPF18 pre-mRNA processing factor 18 IEA
TAS
KEGG
RGD
PMID:24452469 hsa:03040, RGD:9686092 NCBI chr10:13,586,965...13,655,929
Ensembl chr10:13,586,939...13,668,445
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:60,890,547...60,906,585
Ensembl chr11:60,890,547...60,906,585
JBrowse link
G PRPF3 pre-mRNA processing factor 3 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr 1:150,321,468...150,353,233
Ensembl chr 1:150,321,479...150,353,233
JBrowse link
G PRPF31 pre-mRNA processing factor 31 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719
JBrowse link
G PRPF38A pre-mRNA processing factor 38A IEA KEGG hsa:03040 NCBI chr 1:52,404,602...52,420,836
Ensembl chr 1:52,404,602...52,420,836
JBrowse link
G PRPF38B pre-mRNA processing factor 38B IEA KEGG hsa:03040 NCBI chr 1:108,692,310...108,702,928
Ensembl chr 1:108,692,310...108,702,928
JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr 9:113,275,658...113,292,905
Ensembl chr 9:113,275,642...113,294,009
JBrowse link
G PRPF40A pre-mRNA processing factor 40 homolog A IEA KEGG hsa:03040 NCBI chr 2:152,651,732...152,718,019
Ensembl chr 2:152,651,593...152,718,012
JBrowse link
G PRPF40B pre-mRNA processing factor 40 homolog B IEA KEGG hsa:03040 NCBI chr12:49,622,646...49,644,665
Ensembl chr12:49,568,218...49,644,666
JBrowse link
G PRPF6 pre-mRNA processing factor 6 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr20:63,981,132...64,033,100
Ensembl chr20:63,981,132...64,033,100
JBrowse link
G PRPF8 pre-mRNA processing factor 8 IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr17:1,650,629...1,684,867
Ensembl chr17:1,650,629...1,684,867
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 TAS RGD PMID:23385723 RGD:9686381 NCBI chr19:797,452...812,312
Ensembl chr19:797,075...812,327
JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 TAS RGD PMID:23498935 RGD:9686382 NCBI chr 1:96,721,784...96,823,739
Ensembl chr 1:96,721,665...96,823,738
JBrowse link
G PUF60 poly(U) binding splicing factor 60 IEA KEGG hsa:03040 NCBI chr 8:143,816,344...143,829,315
Ensembl chr 8:143,816,344...143,830,709
JBrowse link
G QKI QKI, KH domain containing RNA binding TAS RGD PMID:23385723 RGD:9686381 NCBI chr 6:163,414,718...163,578,592
Ensembl chr 6:163,414,000...163,578,592
JBrowse link
G RBM17 RNA binding motif protein 17 IEA KEGG hsa:03040 NCBI chr10:6,089,034...6,117,447
Ensembl chr10:6,089,034...6,117,457
JBrowse link
G RBM22 RNA binding motif protein 22 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 5:150,690,792...150,701,062
Ensembl chr 5:150,690,792...150,701,077
JBrowse link
G RBM25 RNA binding motif protein 25 IEA KEGG hsa:03040 NCBI chr14:73,058,534...73,123,899
Ensembl chr14:73,058,532...73,123,899
JBrowse link
G RBM8A RNA binding motif protein 8A IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr 1:145,921,556...145,927,484
Ensembl chr 1:145,921,556...145,927,678
JBrowse link
G RBMX RNA binding motif protein X-linked IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr  X:136,869,192...136,880,725
Ensembl chr  X:136,848,004...136,880,764
JBrowse link
G RBMXL1 RBMX like 1 IEA KEGG hsa:03040 NCBI chr 1:88,979,456...88,992,629
Ensembl chr 1:88,979,456...88,992,960
JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 TAS RGD PMID:15145352 RGD:9686404 NCBI chr16:2,253,116...2,268,126
Ensembl chr16:2,253,116...2,268,397
JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG hsa:03040 NCBI chr11:65,961,734...65,980,137
Ensembl chr11:65,961,728...65,980,137
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein TAS RGD PMID:23592432 RGD:9686090 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400
JBrowse link
G SF1 splicing factor 1 TAS RGD PMID:19239890 RGD:9686089 NCBI chr11:64,764,606...64,778,542
Ensembl chr11:64,764,606...64,778,786
JBrowse link
G SF3A1 splicing factor 3a subunit 1 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr22:30,331,988...30,356,894
Ensembl chr22:30,331,988...30,356,919
JBrowse link
G SF3A2 splicing factor 3a subunit 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr19:2,236,824...2,248,655
Ensembl chr19:2,236,824...2,248,655
JBrowse link
G SF3A3 splicing factor 3a subunit 3 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 1:37,956,975...37,990,022
Ensembl chr 1:37,956,975...37,990,075
JBrowse link
G SF3B1 splicing factor 3b subunit 1 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,079
JBrowse link
G SF3B2 splicing factor 3b subunit 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr11:66,052,364...66,069,308
Ensembl chr11:66,050,729...66,069,308
JBrowse link
G SF3B3 splicing factor 3b subunit 3 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr16:70,523,816...70,577,668
Ensembl chr16:70,523,791...70,577,670
JBrowse link
G SF3B4 splicing factor 3b subunit 4 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 1:149,923,317...149,927,803
Ensembl chr 1:149,923,317...149,927,803
JBrowse link
G SF3B5 splicing factor 3b subunit 5 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 6:144,094,884...144,095,573
Ensembl chr 6:144,094,884...144,095,573
JBrowse link
G SF3B6 splicing factor 3b subunit 6 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 2:24,067,586...24,076,326
Ensembl chr 2:24,067,586...24,076,373
JBrowse link
G SLU7 SLU7 homolog, splicing factor IEA
TAS
KEGG
RGD
PMID:24452469 hsa:03040, RGD:9686092 NCBI chr 5:160,401,641...160,419,081
Ensembl chr 5:160,401,641...160,421,711
JBrowse link
G SMNDC1 survival motor neuron domain containing 1 IEA KEGG hsa:03040 NCBI chr10:110,290,730...110,304,920
Ensembl chr10:110,290,730...110,304,938
JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 IEA
TAS
KEGG
RGD
PMID:23454554 PMID:23592432 hsa:03040, RGD:9686093, RGD:9686090 NCBI chr 2:96,274,338...96,305,546
Ensembl chr 2:96,274,338...96,321,271
JBrowse link
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG hsa:03040 NCBI chr 2:69,893,956...69,905,236
Ensembl chr 2:69,893,956...69,905,575
JBrowse link
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG hsa:03040 NCBI chr 1:31,259,568...31,296,788
Ensembl chr 1:31,259,568...31,296,788
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr19:49,085,451...49,108,604
Ensembl chr19:49,085,419...49,108,605
JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr19:40,751,203...40,765,389
Ensembl chr19:40,750,637...40,765,389
JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr15:101,281,510...101,295,248
Ensembl chr15:101,281,510...101,295,282
JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853
JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr20:16,730,026...16,742,564
Ensembl chr20:16,729,961...16,742,564
JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr 6:34,757,505...34,773,857
Ensembl chr 6:34,757,505...34,773,857
JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524
JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569
JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052
JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152
JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828
JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740
JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504
JBrowse link
G SNW1 SNW domain containing 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr14:77,717,599...77,761,156
Ensembl chr14:77,717,599...77,761,207
JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 TAS RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 1:24,643,302...24,673,281
Ensembl chr 1:24,631,716...24,673,281
JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 TAS RGD PMID:17537823 RGD:9686091 NCBI chr16:2,752,638...2,771,412
Ensembl chr16:2,752,626...2,772,538
JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 TAS RGD PMID:23498935 RGD:9686382 NCBI chr12:118,981,541...119,163,051
Ensembl chr12:118,981,541...119,163,051
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr17:57,989,038...58,007,246
Ensembl chr17:58,000,919...58,007,346
JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:23,964,347...23,980,327
Ensembl chr 1:23,964,347...23,980,927
JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 1:70,205,696...70,253,052
Ensembl chr 1:70,205,682...70,253,052
JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 6:89,095,959...89,118,071
Ensembl chr 6:89,093,949...89,118,071
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr17:76,734,115...76,737,411
Ensembl chr17:76,734,115...76,737,333
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 6:36,594,362...36,605,600
Ensembl chr 6:36,594,353...36,605,911
JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:29,147,743...29,181,900
Ensembl chr 1:29,147,743...29,181,900
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr14:69,767,142...69,772,005
Ensembl chr14:69,726,900...69,772,005
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr20:43,457,896...43,464,243
Ensembl chr20:43,457,893...43,466,046
JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:38,743,599...38,751,494
Ensembl chr 2:38,743,599...38,751,494
JBrowse link
G SRSF8 serine and arginine rich splicing factor 8 IEA KEGG hsa:03040 NCBI chr11:95,066,877...95,071,225
Ensembl chr11:95,066,919...95,071,225
JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:120,461,672...120,469,748
Ensembl chr12:120,461,672...120,495,946
JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 1:25,222,276...25,232,502
Ensembl chr 1:25,222,276...25,232,502
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein TAS RGD PMID:17537823 RGD:9686091 NCBI chr 6:85,607,784...85,643,870
Ensembl chr 6:85,607,779...85,644,063
JBrowse link
G TCERG1 transcription elongation regulator 1 IEA KEGG hsa:03040 NCBI chr 5:146,447,330...146,511,961
Ensembl chr 5:146,447,311...146,511,961
JBrowse link
G THOC1 THO complex subunit 1 IEA KEGG hsa:03040 NCBI chr18:214,520...268,047
Ensembl chr18:214,520...268,050
JBrowse link
G THOC2 THO complex subunit 2 IEA KEGG hsa:03040 NCBI chr  X:123,600,569...123,733,052
Ensembl chr  X:123,600,561...123,733,056
JBrowse link
G THOC3 THO complex subunit 3 IEA KEGG hsa:03040 NCBI chr 5:175,959,531...175,968,315
Ensembl chr 5:175,917,873...176,034,680
JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 TAS RGD PMID:23385723 RGD:9686381 NCBI chr10:119,573,465...119,596,964
Ensembl chr10:119,571,802...119,597,029
JBrowse link
G TRA2A transformer 2 alpha homolog IEA KEGG hsa:03040 NCBI chr 7:23,504,780...23,531,981
Ensembl chr 7:23,504,780...23,532,041
JBrowse link
G TRA2B transformer 2 beta homolog IEA KEGG hsa:03040 NCBI chr 3:185,914,558...185,938,014
Ensembl chr 3:185,914,558...185,938,103
JBrowse link
G TXNL4A thioredoxin like 4A IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr18:79,970,813...80,033,936
Ensembl chr18:79,970,813...80,033,949
JBrowse link
G U2AF1 U2 small nuclear RNA auxiliary factor 1 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr21:43,092,956...43,107,578
Ensembl chr21:43,092,956...43,107,570
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr19:55,655,035...55,674,716
Ensembl chr19:55,654,146...55,674,716
JBrowse link
G U2SURP U2 snRNP associated SURP domain containing IEA KEGG hsa:03040 NCBI chr 3:143,001,570...143,060,725
Ensembl chr 3:142,964,497...143,060,725
JBrowse link
G USP39 ubiquitin specific peptidase 39 IEA KEGG hsa:03040 NCBI chr 2:85,602,861...85,649,283
Ensembl chr 2:85,602,856...85,649,283
JBrowse link
G WBP11 WW domain binding protein 11 IEA KEGG hsa:03040 NCBI chr12:14,784,582...14,803,478
Ensembl chr12:14,784,582...14,803,486
JBrowse link
G XAB2 XPA binding protein 2 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr19:7,619,525...7,629,545
Ensembl chr19:7,619,525...7,629,545
JBrowse link
G ZMAT2 zinc finger matrin-type 2 IEA KEGG hsa:03040 NCBI chr 5:140,700,447...140,706,686
Ensembl chr 5:140,698,680...140,706,686
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5957
    regulatory pathway 3600
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1637
        RNA processing pathway 247
          RNA maturation pathway 196
            lncRNA maturation pathway 153
              lncRNA capping pathway 0
              lncRNA polyadenylation pathway 0
              spliceosome pathway 153
Path 2
Term Annotations click to browse term
  pathway 5957
    regulatory pathway 3600
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1637
        transcription pathway 1053
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                lncRNA maturation pathway 153
                  lncRNA capping pathway 0
                  lncRNA polyadenylation pathway 0
                  spliceosome pathway 153
paths to the root