Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:3'-end pre-mRNA processing pathway
go back to main search page
Accession:PW:0001579 term browser browse the term
Definition:The 3'-end processing of pre-mRNA is intimately coupled to pol II transcription termination, splicing, mRNA transport and translation.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624864:3,063,555...3,067,045
Ensembl chrNW_004624864:3,063,555...3,067,051 		JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624735:12,444,371...12,457,864
Ensembl chrNW_004624735:12,444,386...12,457,864 		JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624734:8,737,023...8,769,088
Ensembl chrNW_004624734:8,736,911...8,768,583 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624969:265,457...290,514
Ensembl chrNW_004624969:265,117...290,361 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624740:32,860,217...32,876,878
Ensembl chrNW_004624740:32,860,137...32,876,878 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624948:53,317...83,983
Ensembl chrNW_004624948:56,246...84,051 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624926:802,033...822,372 JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624790:133,872...143,762
Ensembl chrNW_004624790:132,023...144,363 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624902:1,755,308...1,780,826 JBrowse link
G Cstf2t cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624791:11,924,945...11,929,106
Ensembl chrNW_004624791:11,925,197...11,927,188 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624767:14,071,196...14,144,758
Ensembl chrNW_004624767:14,071,392...14,144,258 		JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chrNW_004624754:24,281,099...24,283,403
Ensembl chrNW_004624754:24,281,101...24,287,647 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624761:16,067,962...16,145,116
Ensembl chrNW_004624761:16,071,097...16,145,052 		JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624757:115,249...130,775
Ensembl chrNW_004624757:114,844...130,097 		JBrowse link
G Papola poly(A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chrNW_004624734:6,846,537...6,916,808 JBrowse link
G Papolb poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chrNW_004624740:28,451,467...28,457,301 JBrowse link
G Papolg poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chrNW_004624833:1,134,200...1,163,341
Ensembl chrNW_004624833:1,133,462...1,159,684 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624845:6,712,401...6,736,778
Ensembl chrNW_004624845:6,712,408...6,736,773 		JBrowse link
G Sympk symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624832:7,351,303...7,394,337
Ensembl chrNW_004624832:7,354,272...7,394,255 		JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chrNW_004624732:14,183,734...14,280,825
Ensembl chrNW_004624732:14,183,132...14,280,795 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chrNW_004624741:21,691,099...21,768,267
Ensembl chrNW_004624741:21,691,199...21,767,790 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3917
    regulatory pathway 2426
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1306
        RNA processing pathway 157
          RNA maturation pathway 157
            mRNA maturation pathway 139
              3'-end pre-mRNA processing pathway 21
Path 2
Term Annotations click to browse term
  pathway 3917
    regulatory pathway 2426
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1306
        transcription pathway 907
          RNA polymerase transcription pathway 348
            eukaryotic RNA polymerase transcription pathway 348
              RNA polymerase II transcription pathway 279
                mRNA maturation pathway 139
                  3'-end pre-mRNA processing pathway 21
paths to the root