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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:5'-end pre-mRNA capping pathway
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Accession:PW:0001578 term browser browse the term
Definition:5'-end capping occurs earlier in transcription and, along with phosphorylation of pol II, promotes productive elongation.


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5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        RNA processing pathway 294
          RNA maturation pathway 196
            mRNA maturation pathway 178
              5'-end pre-mRNA capping pathway 5
Path 2
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        transcription pathway 1059
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                mRNA maturation pathway 178
                  5'-end pre-mRNA capping pathway 5
paths to the root