PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: RNA maturation pathway
Accession: PW:0001568
browse the term
Definition: Those reactions involved in producing the mature forms of RNAs: mRNA, tRNA and rRNA.
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Clp1
cleavage factor polyribonucleotide kinase subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
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Cpsf1
cleavage and polyadenylation specific factor 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 7:110,200,078...110,210,644
Ensembl chr 7:108,319,434...108,329,934
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Cpsf2
cleavage and polyadenylation specific factor 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
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Cpsf3
cleavage and polyadenylation specific factor 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
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Cpsf4
cleavage and polyadenylation specific factor 4
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586
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Cpsf6
cleavage and polyadenylation specific factor 6
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
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Cpsf7
cleavage and polyadenylation specific factor 7
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
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Cstf1
cleavage stimulation factor subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 3:181,562,953...181,574,727
Ensembl chr 3:161,144,548...161,156,300
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Cstf2
cleavage stimulation factor subunit 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr X:97,253,559...97,279,476
Ensembl chr X:97,253,586...97,279,476
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Cstf2t
cleavage stimulation factor subunit 2, tau variant
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873
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Cstf3
cleavage stimulation factor subunit 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 3:111,421,291...111,492,539
Ensembl chr 3:90,966,354...91,042,196
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Dxo
decapping exoribonuclease
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,993,327...3,995,494
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Fip1l1
factor interacting with PAPOLA and CPSF1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr14:33,969,341...34,030,871
Ensembl chr14:33,617,720...33,675,708
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Nudt21
nudix hydrolase 21
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Pabpn1
poly(A) binding protein, nuclear 1
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chr15:32,337,955...32,342,700
Ensembl chr15:28,368,100...28,372,703
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Papola
poly (A) polymerase alpha
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chr 6:130,446,236...130,499,371
Ensembl chr 6:124,682,105...124,734,468
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Papolb
poly(A) polymerase beta
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chr12:12,044,275...12,046,621
Ensembl chr12:12,044,480...12,046,656
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Papolg
poly(A) polymerase gamma
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
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Pcf11
PCF11 cleavage and polyadenylation factor subunit
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 1:156,109,724...156,136,950
Ensembl chr 1:146,697,646...146,724,124
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Sympk
symplekin scaffold protein
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr 1:87,800,416...87,828,727
Ensembl chr 1:78,672,378...78,700,684
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Wdr33
WD repeat domain 33
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 , RGD:9681742
NCBI chr18:23,706,708...23,812,985
Ensembl chr18:23,432,191...23,468,597
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Xrn2
5'-3' exoribonuclease 2
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chr 3:154,888,558...154,962,519
Ensembl chr 3:134,437,109...134,509,306
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Ncbp1
nuclear cap binding protein subunit 1
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:60,415,982...60,449,089
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Ncbp2
nuclear cap binding protein subunit 2
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr11:82,326,002...82,334,839
Ensembl chr11:68,817,740...68,851,885
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Ramac
RNA guanine-7 methyltransferase activating subunit
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr 1:145,117,752...145,123,640
Ensembl chr 1:135,708,535...135,722,151
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Rngtt
RNA guanylyltransferase and 5'-phosphatase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295
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Rnmt
RNA (guanine-7-) methyltransferase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr18:64,156,067...64,179,601
Ensembl chr18:61,886,292...61,909,775
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Aar2
AAR2 splicing factor
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166
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Acin1
apoptotic chromatin condensation inducer 1
IEA
KEGG
rno:03040
NCBI chr15:32,072,121...32,117,004
Ensembl chr15:28,102,112...28,147,001
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Alyref
Aly/REF export factor
IEA
KEGG
rno:03040
NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069
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Aqr
aquarius intron-binding spliceosomal factor
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044
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Bcas2
BCAS2, pre-mRNA processing factor
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
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Bud31
BUD31 homolog
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr12:14,576,602...14,584,132
Ensembl chr12:9,462,441...9,470,509
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Ccdc12
coiled-coil domain containing 12
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 8:119,513,007...119,564,802
Ensembl chr 8:110,635,710...110,686,417
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Cdc40
cell division cycle 40
IEA
KEGG
rno:03040
NCBI chr20:45,855,739...45,908,239
Ensembl chr20:44,273,089...44,325,358
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Cdc5l
cell division cycle 5-like
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 9:23,062,397...23,100,901
Ensembl chr 9:15,564,767...15,603,450
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Cherp
calcium homeostasis endoplasmic reticulum protein
IEA
KEGG
rno:03040
NCBI chr16:17,367,455...17,380,507
Ensembl chr16:17,367,455...17,380,507
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Crnkl1
crooked neck pre-mRNA splicing factor 1
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 3:153,764,718...153,807,973
Ensembl chr 3:133,337,039...133,354,302 Ensembl chr 6:133,337,039...133,354,302
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Ctnnbl1
catenin, beta like 1
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 3:146,387,940...146,548,987
Ensembl chr 3:146,387,889...146,548,987
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Cwc15
CWC15 spliceosome-associated protein
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325 Ensembl chr 2:11,305,424...11,316,325
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Ddx23
DEAD-box helicase 23
IEA ISO
KEGG RGD
PMID:19239890 PMID:23454554
rno:03040, RGD:9686089 , RGD:9686093
NCBI chr 7:131,676,636...131,693,917
Ensembl chr 7:129,797,614...129,814,949
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Ddx39b
DExD-box helicase 39B
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
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Ddx42
DEAD-box helicase 42
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr10:91,648,719...91,680,730
Ensembl chr10:91,148,254...91,180,939
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Ddx46
DEAD-box helicase 46
IEA ISO
KEGG RGD
PMID:23454554
rno:03040, RGD:9686093
NCBI chr17:8,947,237...8,993,705
Ensembl chr17:8,944,454...8,988,439
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Ddx5
DEAD-box helicase 5
IEA
KEGG
rno:03040
NCBI chr10:92,224,393...92,231,928
Ensembl chr10:91,723,508...91,732,283
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Dhx15
DEAH-box helicase 15
IEA
KEGG
rno:03040
NCBI chr14:62,999,886...63,037,829
Ensembl chr14:58,787,127...58,825,088
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Dhx16
DEAH-box helicase 16
IEA ISO
KEGG RGD
PMID:23454554
rno:03040, RGD:9686093
NCBI chr20:2,866,804...2,879,790
Ensembl chr20:2,862,000...2,874,948
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Dhx38
DEAH-box helicase 38
IEA ISO
KEGG RGD
PMID:23454554
rno:03040, RGD:9686093
NCBI chr19:37,512,893...37,530,135
Ensembl chr19:37,512,891...37,530,140
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Dhx8
DEAH-box helicase 8
IEA ISO
KEGG RGD
PMID:23454554
rno:03040, RGD:9686093
NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137
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Eftud2
elongation factor Tu GTP binding domain containing 2
IEA ISO
KEGG RGD
PMID:23454554 PMID:23592432
rno:03040, RGD:9686093 , RGD:9686090
NCBI chr10:88,304,992...88,352,229
Ensembl chr10:87,804,892...87,846,079
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Eif4a3
eukaryotic translation initiation factor 4A3
IEA ISO
KEGG RGD
PMID:15145352
rno:03040, RGD:9686404
NCBI chr10:105,047,567...105,057,561
Ensembl chr10:104,549,038...104,559,057
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Hnrnpa0
heterogeneous nuclear ribonucleoprotein A0
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr17:6,513,129...6,515,786
Ensembl chr17:6,507,275...6,509,375
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Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
IEA ISO
KEGG RGD
PMID:19239890 PMID:17537823
rno:03040, RGD:9686089 , RGD:9686091
NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:134,375,150...134,381,609
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Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 4:81,867,354...81,875,886
Ensembl chr 4:80,534,651...80,545,249
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Hnrnpa3
heterogeneous nuclear ribonucleoprotein A3
IEA
KEGG
rno:03040
NCBI chr 3:80,984,470...80,999,413
Ensembl chr 3:60,578,673...60,588,306
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Hnrnpab
heterogeneous nuclear ribonucleoprotein A/B
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr10:36,358,004...36,363,898
Ensembl chr10:35,857,041...35,863,344
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Hnrnpc
heterogeneous nuclear ribonucleoprotein C
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr15:27,253,098...27,282,779
Ensembl chr15:24,779,450...24,809,183
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Hnrnpd
heterogeneous nuclear ribonucleoprotein D
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,615,479...9,633,786
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Hnrnph1
heterogeneous nuclear ribonucleoprotein H1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr10:35,187,412...35,203,909
Ensembl chr10:34,693,555...34,702,846
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Hnrnph3
heterogeneous nuclear ribonucleoprotein H3
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr20:25,619,540...25,624,397
Ensembl chr20:25,614,733...25,625,750
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Hnrnpk
heterogeneous nuclear ribonucleoprotein K
IEA ISO
KEGG RGD
PMID:19239890 PMID:17537823
rno:03040, RGD:9686089 , RGD:9686091
NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997
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Hnrnpl
heterogeneous nuclear ribonucleoprotein L
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 1:93,226,373...93,239,084
Ensembl chr 1:84,100,879...84,111,553
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Hnrnpm
heterogeneous nuclear ribonucleoprotein M
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 7:15,140,877...15,178,871
Ensembl chr 7:14,438,688...14,476,762
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Hnrnpr
heterogeneous nuclear ribonucleoprotein R
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 5:153,826,482...153,872,272
Ensembl chr 5:148,543,044...148,574,867
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Hnrnpu
heterogeneous nuclear ribonucleoprotein U
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588
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Hspa1a
heat shock protein family A (Hsp70) member 1A
IEA
KEGG
rno:03040
NCBI chr20:3,875,411...3,877,866
Ensembl chr20:3,856,006...3,873,227
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Hspa1b
heat shock protein family A (Hsp70) member 1B
IEA
KEGG
rno:03040
NCBI chr20:3,859,756...3,863,800
Ensembl chr20:3,856,006...3,873,240 Ensembl chr20:3,856,006...3,873,240
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Hspa1l
heat shock protein family A (Hsp70) member 1 like
IEA
KEGG
rno:03040
NCBI chr20:3,853,496...3,860,223
Ensembl chr20:3,848,843...3,855,571
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Hspa2
heat shock protein family A (Hsp70) member 2
IEA
KEGG
rno:03040
NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:95,128,350...95,131,287
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Hspa8
heat shock protein family A (Hsp70) member 8
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:41,183,264...41,187,259
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Isy1
ISY1 splicing factor homolog
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
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Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
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Lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
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Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr16:18,789,466...18,795,164
Ensembl chr16:18,755,484...18,760,926
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Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA
KEGG
rno:03040
NCBI chr 4:87,281,260...87,284,476
Ensembl chr 6:104,652,477...104,654,165 Ensembl chr 4:104,652,477...104,654,165
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Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr19:46,002,592...46,017,152
Ensembl chr13:42,114,032...42,116,484 Ensembl chr19:42,114,032...42,116,484
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Lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119
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Lsm8
LSM8 homolog, U6 small nuclear RNA associated
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 4:48,272,128...48,277,994
Ensembl chr 4:47,306,295...47,314,293
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Magoh
mago homolog, exon junction complex subunit
IEA
KEGG
rno:03040
NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
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Magohb
mago homolog B, exon junction complex subunit
IEA ISO
KEGG RGD
PMID:15145352
rno:03040, RGD:9686404
NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967
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Mbnl1
muscleblind-like splicing regulator 1
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chr 2:146,789,570...146,964,136
Ensembl chr 2:144,670,285...144,814,368
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Ncbp1
nuclear cap binding protein subunit 1
IEA
KEGG
rno:03040
NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:60,415,982...60,449,089
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Pcbp1
poly(rC) binding protein 1
IEA
KEGG
rno:03040
NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:118,972,661...118,976,500
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Phf5a
PHD finger protein 5A
IEA
KEGG
rno:03040
NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460
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Pigz
phosphatidylinositol glycan anchor biosynthesis, class Z
IEA
KEGG
rno:03040
NCBI chr11:68,831,847...68,851,798
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Plrg1
pleiotropic regulator 1
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
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Pnn
pinin, desmosome associated protein
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chr 6:82,493,032...82,501,345
Ensembl chr 6:76,758,117...76,766,889
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Ppie
peptidylprolyl isomerase E
IEA ISO
KEGG RGD
PMID:18544344 PMID:23742842
rno:03040, RGD:9686376 , RGD:9686094
NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235
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Ppig
peptidylprolyl isomerase G
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chr 3:74,891,846...74,923,010
Ensembl chr 3:54,484,023...54,512,926
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Ppih
peptidylprolyl isomerase H
IEA ISO
KEGG RGD
PMID:18544344
rno:03040, RGD:9686376
NCBI chr 5:132,906,324...132,924,341
Ensembl chr 5:132,906,328...132,924,267
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Ppil1
peptidylprolyl isomerase like 1
IEA ISO
KEGG RGD
PMID:18544344 PMID:23742842
rno:03040, RGD:9686376 , RGD:9686094
NCBI chr20:7,303,919...7,323,962
Ensembl chr20:7,302,621...7,322,354
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Ppil2
peptidylprolyl isomerase like 2
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chr11:97,401,944...97,424,581
Ensembl chr11:83,897,764...83,922,144
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Ppil3
peptidylprolyl isomerase like 3
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886
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Pqbp1
polyglutamine binding protein 1
IEA
KEGG
rno:03040
NCBI chr X:17,275,445...17,280,018
Ensembl chr X:14,603,539...14,608,087
G
Prpf18
pre-mRNA processing factor 18
IEA ISO
KEGG RGD
PMID:24452469
rno:03040, RGD:9686092
NCBI chr17:78,539,004...78,570,483
Ensembl chr17:73,630,571...73,690,979
G
Prpf19
pre-mRNA processing factor 19
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:207,541,595...207,552,662
G
Prpf3
pre-mRNA processing factor 3
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
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Prpf31
pre-mRNA processing factor 31
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
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Prpf38a
pre-mRNA processing factor 38A
IEA
KEGG
rno:03040
NCBI chr 5:123,312,461...123,324,160
Ensembl chr 5:123,311,482...123,323,972
G
Prpf38b
pre-mRNA processing factor 38B
IEA
KEGG
rno:03040
NCBI chr 2:199,241,312...199,250,342
Ensembl chr 2:196,553,225...196,562,250
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Prpf4
pre-mRNA splicing tri-snRNP complex factor PRPF4
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919
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Prpf40a
pre-mRNA processing factor 40 homolog A
IEA
KEGG
rno:03040
NCBI chr 3:58,036,779...58,098,996
Ensembl chr 3:37,627,690...37,690,886
G
Prpf6
pre-mRNA processing factor 6
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
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Prpf8
pre-mRNA processing factor 8
IEA ISO
KEGG RGD
PMID:23592432
rno:03040, RGD:9686090
NCBI chr10:60,829,778...60,852,887
Ensembl chr10:60,331,494...60,354,606
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Ptbp1
polypyrimidine tract binding protein 1
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chr 7:10,493,199...10,502,957
Ensembl chr 7:9,842,574...9,852,397
G
Ptbp2
polypyrimidine tract binding protein 2
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chr 2:210,497,610...210,558,497
Ensembl chr 2:207,812,920...207,873,506
G
Puf60
poly-U binding splicing factor 60
IEA
KEGG
rno:03040
NCBI chr 7:109,663,490...109,674,443
Ensembl chr 7:107,782,770...107,794,531
G
Qki
QKI, KH domain containing RNA binding
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chr 1:52,935,357...53,047,338
Ensembl chr 1:50,387,698...50,498,831
G
Rbm17
RNA binding motif protein 17
IEA
KEGG
rno:03040
NCBI chr17:71,846,941...71,863,834
Ensembl chr17:66,937,140...66,954,014
G
Rbm22
RNA binding motif protein 22
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr18:56,283,807...56,294,615
Ensembl chr18:54,013,351...54,024,569
G
Rbm25
RNA binding motif protein 25
IEA
KEGG
rno:03040
NCBI chr 6:108,993,119...109,050,159
Ensembl chr 6:103,271,801...103,317,854
G
Rbm25l1
RNA binding motif protein 25-like 1
IEA
KEGG
rno:03040
NCBI chr10:10,267,026...10,270,510
Ensembl chr10:10,267,260...10,269,710 Ensembl chr 6:10,267,260...10,269,710
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Rbm8a
RNA binding motif protein 8A
IEA ISO
KEGG RGD
PMID:15145352
rno:03040, RGD:9686404
NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
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Rbmx
RNA binding motif protein, X-linked
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr X:140,342,544...140,352,121
Ensembl chr X:135,305,325...135,314,743
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Rbmxl1
Rbmx like 1
IEA
KEGG
rno:03040
NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
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Rnps1
RNA binding protein with serine rich domain 1
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chr10:13,950,151...13,960,396
Ensembl chr10:13,445,653...13,455,858
G
Sart1
spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
IEA
KEGG
rno:03040
NCBI chr 1:212,119,824...212,128,517
Ensembl chr 1:202,690,459...202,699,136
G
Sart3
spliceosome associated factor 3, U4/U6 recycling protein
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
G
Sf1
splicing factor 1
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chr 1:213,090,256...213,112,688
Ensembl chr 1:203,670,018...203,684,330
G
Sf3a1
splicing factor 3A subunit 1
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
G
Sf3a2
splicing factor 3A subunit 2
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
G
Sf3a3
splicing factor 3a, subunit 3
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
G
Sf3b1
splicing factor 3b, subunit 1
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 9:63,986,829...64,026,723
Ensembl chr 9:56,492,403...56,532,300
G
Sf3b2
splicing factor 3b, subunit 2
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759
G
Sf3b3
splicing factor 3b, subunit 3
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245
G
Sf3b4
splicing factor 3B subunit 4
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 2:186,421,667...186,426,419
Ensembl chr 2:183,732,754...183,737,959
G
Sf3b5
splicing factor 3b, subunit 5
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 1:7,357,040...7,357,752
Ensembl chr 1:7,350,731...7,357,839
G
Sf3b6
splicing factor 3B, subunit 6
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 6:33,545,495...33,554,537
Ensembl chr 6:27,826,029...27,835,156
G
Slu7
SLU7 homolog, splicing factor
IEA ISO
KEGG RGD
PMID:24452469
rno:03040, RGD:9686092
NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
G
Smndc1
survival motor neuron domain containing 1
IEA
KEGG
rno:03040
NCBI chr 1:252,389,675...252,400,749
Ensembl chr 1:252,389,673...252,401,616
G
Snrnp200
small nuclear ribonucleoprotein U5 subunit 200
ISO
RGD
PMID:23592432 PMID:23454554
RGD:9686090 , RGD:9686093
NCBI chr 3:134,882,173...134,911,512
Ensembl chr 3:114,428,854...114,458,182
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Snrnp27
small nuclear ribonucleoprotein U4/U6.U5 subunit 27
IEA
KEGG
rno:03040
NCBI chr 4:119,123,676...119,133,234
Ensembl chr 4:119,121,877...119,133,234
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Snrnp40
small nuclear ribonucleoprotein U5 subunit 40
IEA
KEGG
rno:03040
NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776
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Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
IEA ISO
KEGG RGD
PMID:23592432
rno:03040, RGD:9686090
NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:95,856,036...95,876,392
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Snrpa
small nuclear ribonucleoprotein polypeptide A
IEA ISO
KEGG RGD
PMID:23592432
rno:03040, RGD:9686090
NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538
G
Snrpa1
small nuclear ribonucleoprotein polypeptide A'
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653
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Snrpb
small nuclear ribonucleoprotein polypeptides B and B1
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
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Snrpb2
small nuclear ribonucleoprotein polypeptide B2
IEA ISO
KEGG RGD
PMID:17537823
rno:03040, RGD:9686091
NCBI chr 3:150,852,814...150,862,364
Ensembl chr 3:130,399,248...130,408,812
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Snrpc
small nuclear ribonucleoprotein polypeptide C
IEA ISO
KEGG RGD
PMID:23592432
rno:03040, RGD:9686090
NCBI chr20:5,890,229...5,908,410
Ensembl chr20:5,888,453...5,906,638 Ensembl chr10:5,888,453...5,906,638
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Snrpd1
small nuclear ribonucleoprotein D1 polypeptide
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
G
Snrpd2
small nuclear ribonucleoprotein D2 polypeptide
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr 1:87,926,030...87,929,259
Ensembl chr 1:78,798,377...78,803,351 Ensembl chr20:78,798,377...78,803,351
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Snrpd3
small nuclear ribonucleoprotein D3 polypeptide
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
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Snrpe
small nuclear ribonucleoprotein polypeptide E
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310 Ensembl chr 8:45,050,986...45,057,310
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Snrpf
small nuclear ribonucleoprotein polypeptide F
IEA ISO
KEGG RGD
PMID:17537823 PMID:19239890
rno:03040, RGD:9686091 , RGD:9686089
NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
G
Snrpg
small nuclear ribonucleoprotein polypeptide G
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 4:120,369,676...120,377,263
Ensembl chr 4:118,812,252...118,819,826 Ensembl chr X:118,812,252...118,819,826
G
Snu13
small nuclear ribonucleoprotein 13
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 7:115,445,415...115,451,008
Ensembl chr 7:113,565,295...113,570,872 Ensembl chr 1:113,565,295...113,570,872
G
Snu13l1
small nuclear ribonucleoprotein 13 like 1
IEA
KEGG
rno:03040
NCBI chr X:155,666,366...155,666,788
Ensembl chr X:150,624,087...150,624,473
G
Snw1
SNW domain containing 1
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
G
Srrm1
serine and arginine repetitive matrix 1
ISO
RGD
PMID:17537823 PMID:15145352
RGD:9686091 , RGD:9686404
NCBI chr 5:152,843,167...152,875,554
Ensembl chr 5:147,559,514...147,591,849
G
Srrm2
serine/arginine repetitive matrix 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr10:13,320,059...13,353,337
Ensembl chr10:12,815,471...12,848,751
G
Srrm4
serine/arginine repetitive matrix 4
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chr12:45,659,729...45,819,643
Ensembl chr12:39,999,488...40,155,725
G
Srsf1
serine and arginine rich splicing factor 1
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr10:73,335,519...73,342,549
Ensembl chr10:72,839,274...72,845,336
G
Srsf10
serine and arginine rich splicing factor 10
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 5:153,372,307...153,386,520
Ensembl chr 5:148,088,823...148,101,768
G
Srsf11
serine and arginine rich splicing factor 11
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 2:247,074,623...247,101,460
Ensembl chr 2:247,074,631...247,101,425
G
Srsf12
serine and arginine rich splicing factor 12
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
G
Srsf2
serine and arginine rich splicing factor 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr10:102,550,962...102,554,200
Ensembl chr10:102,052,314...102,055,338
G
Srsf3
serine and arginine rich splicing factor 3
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chr20:7,093,529...7,103,517
Ensembl chr20:7,091,910...7,101,078
G
Srsf4
serine and arginine rich splicing factor 4
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 5:149,345,538...149,373,309
Ensembl chr 5:144,061,463...144,089,229
G
Srsf5
serine and arginine rich splicing factor 5
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 6:106,333,998...106,341,467
Ensembl chr 6:100,605,456...100,610,177
G
Srsf6
serine and arginine rich splicing factor 6
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 3:172,009,072...172,014,395
Ensembl chr 3:151,589,535...151,594,860
G
Srsf7
serine and arginine rich splicing factor 7
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr 6:20,564,035...20,571,205
Ensembl chr 6:14,811,808...14,818,965
G
Srsf9
serine and arginine rich splicing factor 9
ISO
RGD
PMID:19239890 PMID:17537823
RGD:9686089 , RGD:9686091
NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499
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Syf2
SYF2 pre-mRNA-splicing factor
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414
G
Syncrip
synaptotagmin binding, cytoplasmic RNA interacting protein
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chr 8:98,282,358...98,315,412
Ensembl chr 8:89,402,866...89,435,515
G
Tcerg1
transcription elongation regulator 1
IEA
KEGG
rno:03040
NCBI chr18:34,756,558...34,817,441
Ensembl chr18:34,505,751...34,566,470
G
Thoc1
THO complex subunit 1
IEA
KEGG
rno:03040
NCBI chr18:1,253,041...1,291,956
Ensembl chr18:983,824...1,019,114
G
Thoc2
THO complex subunit 2
IEA
KEGG
rno:03040
NCBI chr X:125,500,549...125,615,139
Ensembl chr X:120,634,968...120,749,513
G
Thoc3
THO complex subunit 3
IEA
KEGG
rno:03040
NCBI chr17:10,143,184...10,152,375
Ensembl chr17:10,143,139...10,152,370
G
Tial1
Tia1 cytotoxic granule-associated RNA binding protein-like 1
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chr 1:192,438,794...192,475,520
Ensembl chr 1:183,009,253...183,031,637
G
Tra2a
transformer 2 alpha
IEA
KEGG
rno:03040
NCBI chr 4:79,551,699...79,570,621
Ensembl chr 4:78,220,883...78,239,712
G
Tra2b
transformer 2 beta
IEA
KEGG
rno:03040
NCBI chr11:92,293,403...92,311,651
Ensembl chr11:78,788,884...78,807,249
G
Txnl4a
thioredoxin-like 4A
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chr18:75,934,085...75,949,873
Ensembl chr18:73,659,107...73,674,893
G
U2af1
U2 small nuclear RNA auxiliary factor 1
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chr20:9,744,206...9,755,146
Ensembl chr20:9,742,905...9,753,832
G
U2af2
U2 small nuclear RNA auxiliary factor 2
IEA ISO
KEGG RGD
PMID:19239890
rno:03040, RGD:9686089
NCBI chr 1:77,789,752...77,807,307
Ensembl chr 1:68,760,924...68,778,492
G
U2surp
U2 snRNP-associated SURP domain containing
IEA
KEGG
rno:03040
NCBI chr 8:104,898,580...104,963,642
Ensembl chr 8:96,022,957...96,075,691
G
Usp39
ubiquitin specific peptidase 39
IEA
KEGG
rno:03040
NCBI chr 4:105,932,140...105,964,551
Ensembl chr 4:104,373,955...104,406,359
G
Wbp11
WW domain binding protein 11
IEA
KEGG
rno:03040
NCBI chr 4:171,412,187...171,425,634
Ensembl chr 4:169,680,983...169,694,443
G
Xab2
XPA binding protein 2
IEA ISO
KEGG RGD
PMID:23742842
rno:03040, RGD:9686094
NCBI chr12:6,465,569...6,477,616
Ensembl chr12:1,667,672...1,679,692
G
Zmat2
zinc finger, matrin type 2
IEA
KEGG
rno:03040
NCBI chr18:28,683,617...28,688,252
Ensembl chr18:28,398,795...28,414,747
G
Clp1
cleavage factor polyribonucleotide kinase subunit 1
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
G
Elac1
elaC ribonuclease Z 1
ISO
RGD
PMID:21572561
RGD:9685334
NCBI chr18:67,321,231...67,341,358
Ensembl chr18:67,323,583...67,340,936
G
Elac2
elaC ribonuclease Z 2
ISO
RGD
PMID:21572561
RGD:9685334
NCBI chr10:50,131,449...50,154,755
Ensembl chr10:49,632,378...49,655,614
G
Pop1
POP1 homolog, ribonuclease P/MRP subunit
ISO
RGD
PMID:19931535 PMID:19931535
RGD:9685326 , RGD:9685326
NCBI chr 7:67,590,502...67,618,187
Ensembl chr 7:65,705,368...65,733,141
G
Pop4
POP4 homolog, ribonuclease P/MRP subunit
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr 1:100,096,722...100,105,056
Ensembl chr 1:90,960,022...90,968,443
G
Pop5
POP5 homolog, ribonuclease P/MRP subunit
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr12:47,037,451...47,045,778
Ensembl chr12:41,376,755...41,381,336
G
Pop7
POP7 homolog, ribonuclease P/MRP subunit
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr12:24,826,161...24,827,202
Ensembl chr12:19,189,138...19,190,674
G
Rpp14
ribonuclease P/MRP subunit p14
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr15:16,837,796...16,847,970
Ensembl chr15:16,836,859...16,852,101 Ensembl chr15:16,836,859...16,852,101
G
Rpp21
ribonuclease P/MRP subunit p21
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr20:2,018,170...2,020,100
Ensembl chr20:2,018,147...2,020,106
G
Rpp25
ribonuclease P and MRP subunit p25
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr 8:66,803,262...66,804,642
Ensembl chr 8:57,907,352...57,908,732
G
Rpp30
ribonuclease P/MRP subunit p30
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr 1:233,786,048...233,808,958
Ensembl chr 1:233,786,099...233,808,952
G
Rpp38
ribonuclease P/MRP subunit p38
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr17:79,823,237...79,826,908
Ensembl chr17:74,908,932...74,927,431
G
Rpp40
ribonuclease P/MRP subunit p40
ISO
RGD
PMID:19931535
RGD:9685326
NCBI chr17:29,153,203...29,162,241
Ensembl chr17:28,947,734...28,956,788
G
Rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr 7:17,907,668...17,927,136
Ensembl chr 7:17,907,705...17,927,132
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Ssb
small RNA binding exonuclease protection factor La
ISO
RGD
PMID:21572561
RGD:9685334
NCBI chr 3:75,024,385...75,034,016
Ensembl chr 3:54,616,619...54,626,203
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Tsen15
tRNA splicing endonuclease subunit 15
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr13:67,040,134...67,055,509
Ensembl chr13:64,490,218...64,505,617
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Tsen2
tRNA splicing endonuclease subunit 2
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr 4:150,275,389...150,310,846
Ensembl chr 4:148,602,863...148,638,215
G
Tsen34
tRNA splicing endonuclease subunit 34
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr 1:74,432,687...74,440,553
Ensembl chr 1:65,517,330...65,524,412
G
Tsen54
tRNA splicing endonuclease subunit 54
ISO
RGD
PMID:25071838
RGD:9685342
NCBI chr10:101,540,479...101,549,022
Ensembl chr10:101,042,503...101,050,087
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all