Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:prostaglandin biosynthetic pathway
go back to main search page
Accession:PW:0001532 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis of prostaglandins - a class of eicosanoid prostanoids with several members, exerting a range of important functions in the immune and cardiovascular systems.
Synonyms:related_synonym: prostaglandin biosynthetic process


show annotations for term's descendants           Sort by:
prostaglandin biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 IDA RGD PMID:23747692 RGD:8552778 NCBI chr 1:45,550,826...45,570,049
Ensembl chr 1:45,550,543...45,570,049 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B IDA RGD PMID:23747692 RGD:8552778 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284 		JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 TAS RGD PMID:12432932 RGD:8552774 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686 		JBrowse link
G CBR1 carbonyl reductase 1 TAS RGD PMID:12432932 RGD:8552774 NCBI chr21:36,070,024...36,073,164
Ensembl chr21:36,069,941...36,073,166 		JBrowse link
G HPGDS hematopoietic prostaglandin D synthase TAS RGD PMID:23063076 PMID:22679221 RGD:8552701, RGD:8552712 NCBI chr 4:94,298,535...94,342,836
Ensembl chr 4:94,298,535...94,342,876 		JBrowse link
G PRXL2B peroxiredoxin like 2B ISO RGD PMID:18006499 RGD:8552775 NCBI chr 1:2,586,523...2,591,468
Ensembl chr 1:2,586,491...2,591,469 		JBrowse link
G PTGDS prostaglandin D2 synthase TAS RGD PMID:23063076 PMID:22679221 RGD:8552701, RGD:8552712 NCBI chr 9:136,977,504...136,981,742
Ensembl chr 9:136,975,092...136,981,742 		JBrowse link
G PTGES prostaglandin E synthase TAS RGD PMID:23063076 PMID:22679221 RGD:8552701, RGD:8552712 NCBI chr 9:129,738,349...129,753,042
Ensembl chr 9:129,738,331...129,753,042 		JBrowse link
G PTGES2 prostaglandin E synthase 2 TAS RGD PMID:23063076 PMID:22679221 RGD:8552701, RGD:8552712 NCBI chr 9:128,120,693...128,128,440
Ensembl chr 9:128,120,693...128,128,462 		JBrowse link
G PTGES3 prostaglandin E synthase 3 TAS RGD PMID:23063076 PMID:22679221 RGD:8552701, RGD:8552712 NCBI chr12:56,663,349...56,688,284
Ensembl chr12:56,663,341...56,688,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5957
    classic metabolic pathway 1803
      lipid metabolic pathway 431
        eicosanoid metabolic pathway 18
          prostanoid metabolic pathway 14
            prostaglandin metabolic pathway 10
              prostaglandin biosynthetic pathway 10
Path 2
Term Annotations click to browse term
  pathway 5957
    classic metabolic pathway 1803
      lipid metabolic pathway 431
        fatty acid metabolic pathway 143
          arachidonic acid metabolic pathway 69
            cyclooxygenase mediated pathway of arachidonic acid metabolism 16
              prostaglandin metabolic pathway 10
                prostaglandin biosynthetic pathway 10
paths to the root