PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: chromatin modification pathway
Accession: PW:0001403
browse the term
Definition: The pathway of chromatin - DNA and constituent histones, modification mediated by writers and recognized by readers which in turn, act upon their effectors. The modifications are removed by erasers. Mutations in the writer, reader or eraser categories are known to be implicated in cancer.
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Mbd4
methyl-CpG binding domain 4 DNA glycosylase
ISO
in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP
RGD
PMID:24004570
RGD:9588971
NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
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Cxxc1
CXXC finger protein 1
ISO
RGD
PMID:23697932
RGD:9479164
NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551
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Dnmt1
DNA methyltransferase 1
ISO
RGD
PMID:22770212 PMID:24825349
RGD:8695943 , RGD:8695944
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
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Dnmt3a
DNA methyltransferase 3 alpha
ISO
RGD
PMID:22770212 PMID:24825349
RGD:8695943 , RGD:8695944
NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
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Dnmt3b
DNA methyltransferase 3 beta
ISO
RGD
PMID:22770212 PMID:24825349
RGD:8695943 , RGD:8695944
NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124
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Ebf1
EBF transcription factor 1
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr10:29,095,858...29,489,142
Ensembl chr10:29,099,933...29,487,665
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Kdm2a
lysine demethylase 2A
ISO
RGD
PMID:23697932
RGD:9479164
NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
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Kdm2b
lysine demethylase 2B
ISO
RGD
PMID:23697932
RGD:9479164
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
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Kmt2a
lysine methyltransferase 2A
ISO
RGD
PMID:23697932
RGD:9479164
NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
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Kmt2c
lysine methyltransferase 2C
ISO
RGD
PMID:23697932
RGD:9479164
NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
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Mbd1
methyl-CpG binding domain protein 1
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554
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Mbd2
methyl-CpG binding domain protein 2
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
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Mbd4
methyl-CpG binding domain 4 DNA glycosylase
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
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Mecp2
methyl CpG binding protein 2
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr X:151,781,177...151,844,687
Ensembl chr X:151,789,930...151,844,689
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Nanog
Nanog homeobox
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Ogt
O-linked N-acetylglucosamine (GlcNAc) transferase
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr X:66,771,278...66,816,148
Ensembl chr X:66,771,349...66,816,146
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Pparg
peroxisome proliferator-activated receptor gamma
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Prdm14
PR/SET domain 14
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
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Sin3a
SIN3 transcription regulator family member A
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
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Spi1
Spi-1 proto-oncogene
ISO
RGD
PMID:24825349
RGD:8695944
NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
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Tet1
tet methylcytosine dioxygenase 1
ISO
RGD
PMID:22770212 PMID:24825349
RGD:8695943 , RGD:8695944
NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
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Tet2
tet methylcytosine dioxygenase 2
ISO
RGD
PMID:22770212 PMID:24825349
RGD:8695943 , RGD:8695944
NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
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Tet3
tet methylcytosine dioxygenase 3
ISO
RGD
PMID:22770212 PMID:23697932 PMID:24825349
RGD:8695943 , RGD:9479164 , RGD:8695944
NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
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Uhrf1
ubiquitin-like with PHD and ring finger domains 1
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
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Uhrf2
ubiquitin like with PHD and ring finger domains 2
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr 1:227,814,639...227,877,907
Ensembl chr 1:227,814,963...227,877,904
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Zbtb33
zinc finger and BTB domain containing 33
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr X:116,963,337...116,970,547
Ensembl chr X:116,963,347...116,971,023
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Zbtb38
zinc finger and BTB domain containing 38
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr 8:97,284,617...97,288,518
Ensembl chr 8:97,280,993...97,485,625
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Zbtb4
zinc finger and BTB domain containing 4
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr10:54,480,698...54,501,492
Ensembl chr10:54,485,071...54,501,492
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Zfp57
zinc finger protein 57
ISO
RGD
PMID:23324617
RGD:8695954
NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
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Aebp2
AE binding protein 2
ISO
RGD
PMID:24148750
RGD:9479059
NCBI chr 4:173,527,881...173,566,033
Ensembl chr 4:173,528,344...173,593,100
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Aplf
aprataxin and PNKP like factor
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
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Asf1a
anti-silencing function 1A histone chaperone
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
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Asf1b
anti-silencing function 1B histone chaperone
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
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Ash1l
ASH1 like histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 2:174,346,267...174,483,057
Ensembl chr 2:174,346,150...174,483,055
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Ash2l
ASH2 like histone lysine methyltransferase complex subunit
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061
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Bap1
BRCA1 associated deubiquitinase 1
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535
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Birc5
baculoviral IAP repeat-containing 5
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380
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Bmi1
BMI1 proto-oncogene, polycomb ring finger
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
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Bptf
bromodomain PHD finger transcription factor
ISO
RGD
PMID:24686119 PMID:23642229
RGD:9479075 , RGD:9479074
NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
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Brcc3
BRCA1/BRCA2-containing complex subunit 3
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080
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Brd1
bromodomain containing 1
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr 7:119,774,187...119,822,032
Ensembl chr 7:119,774,188...119,822,031
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Brd2
bromodomain containing 2
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
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Brd3
bromodomain containing 3
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577
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Brd4
bromodomain containing 4
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
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Brd7
bromodomain containing 7
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494
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Brdt
bromodomain testis associated
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842
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Brf1
BRF1, RNA polymerase III transcription initiation factor subunit
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
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Carm1
coactivator-associated arginine methyltransferase 1
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
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Cbx2
chromobox 2
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr10:104,278,517...104,287,384
Ensembl chr10:104,278,549...104,287,383
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Cbx4
chromobox 4
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr10:104,337,140...104,343,210
Ensembl chr10:104,336,876...104,356,706
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Cbx5
chromobox 5
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
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Cbx6
chromobox 6
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091
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Cbx7
chromobox 7
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973
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Cbx8
chromobox 8
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024
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Chaf1a
chromatin assembly factor 1 subunit A
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
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Chaf1b
chromatin assembly factor 1 subunit B
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
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Chd1
chromodomain helicase DNA binding protein 1
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
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Crebbp
CREB binding protein
ISO
RGD
PMID:21151613 PMID:24686119
RGD:9104959 , RGD:9479075
NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
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Cxxc1
CXXC finger protein 1
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551
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Daxx
death-domain associated protein
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
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Dot1l
DOT1 like histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 7:8,918,764...8,959,474
Ensembl chr 7:8,917,786...8,956,475
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Dpf3
double PHD fingers 3
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 6:102,841,403...103,125,558
Ensembl chr 6:102,846,029...103,125,493
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Dpy30
dpy-30 histone methyltransferase complex regulatory subunit
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432
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Eed
embryonic ectoderm development
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974
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Ehmt1
euchromatic histone lysine methyltransferase 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007
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Ehmt2
euchromatic histone lysine methyltransferase 2
ISO
RGD
PMID:23200123 PMID:23642229
RGD:7242632 , RGD:9479074
NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
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Ep300
E1A binding protein p300
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Ezh1
enhancer of zeste 1 polycomb repressive complex 2 subunit
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
ISO
RGD
PMID:23200123 PMID:24148750 PMID:23473600
RGD:7242632 , RGD:9479059 , RGD:9479058
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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H2ax
H2A.X variant histone
ISO
RGD
PMID:24614311
RGD:9075965
NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
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H2az1
H2A.Z variant histone 1
ISO
RGD
PMID:24696452
RGD:9074213
NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485
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H3f3a
H3.3 histone A
ISO
RGD
PMID:24614311
RGD:9075965
NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908
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H3f3b
H3.3 histone B
ISO
RGD
PMID:24614311
RGD:9075965
NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
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Hat1
histone acetyltransferase 1
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
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Hcfc1
host cell factor C1
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr X:151,687,779...151,712,688
Ensembl chr X:151,687,779...151,712,638
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Hdac1
histone deacetylase 1
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
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Hdac10
histone deacetylase 10
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
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Hdac11
histone deacetylase 11
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 4:123,645,873...123,667,407
Ensembl chr 4:123,650,157...123,667,405
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Hdac2
histone deacetylase 2
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
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Hdac3
histone deacetylase 3
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856
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Hdac4
histone deacetylase 4
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
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Hdac5
histone deacetylase 5
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
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Hdac6
histone deacetylase 6
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr X:14,550,645...14,572,445
Ensembl chr X:14,551,044...14,572,441
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Hdac7
histone deacetylase 7
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 7:128,923,918...128,961,926
Ensembl chr 7:128,923,920...128,962,072
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Hdac8
histone deacetylase 8
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr X:67,385,288...67,593,014
Ensembl chr X:67,385,289...67,592,923
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Hdac9
histone deacetylase 9
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
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Hira
histone cell cycle regulator
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
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Hjurp
Holliday junction recognition protein
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
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Ing2
inhibitor of growth family, member 2
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482
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Jarid2
jumonji and AT-rich interaction domain containing 2
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
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Jmjd1c
jumonji domain containing 1C
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122
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Kat2a
lysine acetyltransferase 2A
ISO
RGD
PMID:21151613 PMID:23642229
RGD:9104959 , RGD:9479074
NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
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Kat2b
lysine acetyltransferase 2B
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
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Kat5
lysine acetyltransferase 5
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
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Kat6a
lysine acetyltransferase 6A
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
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Kat6b
lysine acetyltransferase 6B
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
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Kat7
lysine acetyltransferase 7
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
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Kat8
lysine acetyltransferase 8
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633
G
Kdm1a
lysine demethylase 1A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
G
Kdm1b
lysine demethylase 1B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
G
Kdm2a
lysine demethylase 2A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
G
Kdm2b
lysine demethylase 2B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
G
Kdm3a
lysine demethylase 3A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073
G
Kdm3b
lysine demethylase 3B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628
G
Kdm4a
lysine demethylase 4A
ISO
RGD
PMID:23200123 PMID:23642229 PMID:24035451
RGD:7242632 , RGD:9479074 , RGD:9479148
NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
G
Kdm4b
lysine demethylase 4B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543
G
Kdm4c
lysine demethylase 4C
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
G
Kdm4d
lysine demethylase 4D
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
G
Kdm5a
lysine demethylase 5A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
G
Kdm5b
lysine demethylase 5B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
G
Kdm5c
lysine demethylase 5C
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr X:21,345,459...21,387,045
Ensembl chr X:21,345,481...21,381,870
G
Kdm5d
lysine demethylase 5D
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr Y:527,069...624,019
Ensembl chr Y:530,401...624,018
G
Kdm6a
lysine demethylase 6A
ISO
RGD
PMID:22663077 PMID:23200123
RGD:7242632 RGD:9479053
NCBI chr X:4,337,466...4,477,100
Ensembl chr X:4,337,750...4,477,062
G
Kdm6b
lysine demethylase 6B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
G
Kdm7a
lysine demethylase 7A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
G
Kdm8
lysine demethylase 8
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841
G
Kmt2a
lysine methyltransferase 2A
ISO
RGD
PMID:23200123 PMID:22663077
RGD:7242632 , RGD:9479053
NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
G
Kmt2b
lysine methyltransferase 2B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:85,821,700...85,840,987
Ensembl chr 1:85,821,753...85,841,326
G
Kmt2c
lysine methyltransferase 2C
ISO
RGD
PMID:23200123 PMID:22663077
RGD:7242632 , RGD:9479053
NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
G
Kmt2d
lysine methyltransferase 2D
ISO
RGD
PMID:23200123 PMID:22663077
RGD:7242632 , RGD:9479053
NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325
G
Kmt2e
lysine methyltransferase 2E
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373
G
Kmt5a
lysine methyltransferase 5A
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr12:32,139,353...32,167,777
Ensembl chr12:32,139,178...32,162,711
G
Kmt5al1
lysine methyltransferase 5A like 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 2:142,289,672...142,292,195
G
Kmt5b
lysine methyltransferase 5B
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
G
Kmt5c
lysine methyltransferase 5C
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
G
L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233
G
Lbr
lamin B receptor
ISO
RGD
PMID:24035451
RGD:9479148
NCBI chr13:93,539,386...93,564,026
Ensembl chr13:93,538,920...93,564,017
G
LOC100911617
protein arginine N-methyltransferase 6-like
ISO
RGD
PMID:24583552
RGD:9479047
G
Macroh2a1
macroH2A.1 histone
ISO
RGD
PMID:24696452
RGD:9074213
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
G
Macroh2a2
macroH2A.2 histone
ISO
RGD
PMID:24696452
RGD:9074213
NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
G
Mcph1
microcephalin 1
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
G
Mdc1
mediator of DNA damage checkpoint 1
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240
G
Men1
menin 1
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
G
Mtf2
metal response element binding transcription factor 2
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524
G
Mysm1
myb-like, SWIRM and MPN domains 1
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967
G
Nap1l1
nucleosome assembly protein 1-like 1
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593
G
Nasp
nuclear autoantigenic sperm protein
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
G
Ncoa6
nuclear receptor coactivator 6
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268
G
Nsd1
nuclear receptor binding SET domain protein 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr17:9,311,963...9,426,373
Ensembl chr17:9,315,237...9,425,358
G
Nsd3
nuclear receptor binding SET domain protein 3
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr16:66,354,030...66,466,202
Ensembl chr16:66,358,973...66,465,423
G
Orc1
origin recognition complex, subunit 1
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375
G
Pagr1
Paxip1-associated glutamate-rich protein 1
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 1:181,622,698...181,625,024
G
Paxip1
PAX interacting protein 1
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
G
Pbrm1
polybromo 1
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
G
Pcgf1
polycomb group ring finger 1
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 4:115,576,165...115,587,019
Ensembl chr 4:115,583,867...115,587,008
G
Pcgf2
polycomb group ring finger 2
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 RGD:9479060
NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406
G
Pcgf3
polycomb group ring finger 3
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793
G
Pcgf5
polycomb group ring finger 5
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315
G
Pcgf6
polycomb group ring finger 6
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 1:245,925,354...245,944,964
Ensembl chr 1:245,925,360...245,944,914
G
Phc1
polyhomeotic homolog 1
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
G
Phc2
polyhomeotic homolog 2
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 5:141,000,604...141,099,268
Ensembl chr 5:141,050,842...141,099,268
G
Phc3
polyhomeotic homolog 3
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr 2:112,408,709...112,483,719
Ensembl chr 2:112,408,531...112,476,540
G
Phf1
PHD finger protein 1
ISO
RGD
PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750
RGD:9479058 , RGD:9479074 , RGD:9479148 , RGD:9479059
NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871
G
Phf19
PHD finger protein 19
ISO
RGD
PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750
RGD:9479058 , RGD:9479074 , RGD:9479148 , RGD:9479059
NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405
G
Phf2
PHD finger protein 2
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
G
Phf8
PHD finger protein 8
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr X:20,524,103...20,623,459
Ensembl chr X:20,524,558...20,623,410
G
Prdm16
PR/SET domain 16
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601
G
Prdm2
PR/SET domain 2
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 5:155,421,066...155,531,884
Ensembl chr 5:155,422,134...155,531,825
G
Prdm6
PR/SET domain 6
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr18:46,904,115...47,008,482
Ensembl chr18:46,904,127...47,007,823
G
Prdm8
PR/SET domain 8
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr14:11,403,202...11,424,059
Ensembl chr14:11,404,407...11,410,993
G
Prdm9
PR/SET domain 9
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
G
Prmt1
protein arginine methyltransferase 1
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345
G
Prmt2
protein arginine methyltransferase 2
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr20:12,394,748...12,420,643
Ensembl chr20:12,394,798...12,420,643
G
Prmt5
protein arginine methyltransferase 5
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
G
Prmt6
protein arginine methyltransferase 6
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr 2:197,927,750...197,932,760
Ensembl chr 2:197,927,220...197,933,648
G
Prmt7
protein arginine methyltransferase 7
ISO
RGD
PMID:24583552
RGD:9479047
NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
G
Rag2
recombination activating 2
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066
G
Rbbp4
RB binding protein 4, chromatin remodeling factor
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
G
Rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107
G
Rbbp7
RB binding protein 7, chromatin remodeling factor
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr X:31,913,080...31,931,245
Ensembl chr X:31,913,081...31,931,226
G
Ring1
ring finger protein 1
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
G
Rnf2
ring finger protein 2
ISO
RGD
PMID:23473600 PMID:25065329
RGD:9479058 , RGD:9479060
NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
G
Setd1a
SET domain containing 1A, histone lysine methyltransferase
ISO
RGD
PMID:22663077 PMID:23200123
RGD:7242632 RGD:9479053
NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090
G
Setd1b
SET domain containing 1B, histone lysine methyltransferase
ISO
RGD
PMID:22663077 PMID:23200123
RGD:7242632 RGD:9479053
NCBI chr12:33,395,963...33,421,671
Ensembl chr12:33,396,120...33,426,934
G
Setd2
SET domain containing 2, histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
G
Setd7
SET domain containing 7, histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468
G
Setdb1
SET domain bifurcated histone lysine methyltransferase 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
G
Sgf29
SAGA complex associated factor 29
ISO
RGD
PMID:24035451 PMID:23642229
RGD:9479148 , RGD:9479074
NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781
G
Sirt1
sirtuin 1
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
G
Sirt2
sirtuin 2
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
G
Sirt3
sirtuin 3
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808
G
Sirt4
sirtuin 4
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr12:41,125,533...41,139,440
Ensembl chr12:41,131,262...41,139,439
G
Sirt5
sirtuin 5
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr17:21,310,028...21,337,137
Ensembl chr17:21,310,028...21,337,101
G
Sirt6
sirtuin 6
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
G
Sirt7
sirtuin 7
ISO
RGD
PMID:21151613
RGD:9104959
NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
G
Smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684
G
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
ISO
RGD
PMID:24686119
RGD:9479075
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Smyd1
SET and MYND domain containing 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr 4:103,195,330...103,252,989
Ensembl chr 4:103,200,322...103,311,766
G
Smyd2
SET and MYND domain containing 2
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr13:101,425,270...101,466,576
Ensembl chr13:101,425,273...101,466,576
G
Smyd3
SET and MYND domain containing 3
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253
G
Spin1
spindlin 1
ISO
RGD
PMID:24035451
RGD:9479148
NCBI chr17:14,055,685...14,105,366
Ensembl chr17:14,055,689...14,105,411
G
Ssrp1
structure specific recognition protein 1
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
G
Supt16h
SPT16 homolog, facilitates chromatin remodeling subunit
ISO
RGD
PMID:23288364
RGD:9068945
NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
G
Suv39h1
SUV39H1 histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr X:14,421,028...14,433,993
Ensembl chr X:14,421,109...14,433,982
G
Suv39h1-ps1
SUV39H1 histone lysine methyltransferase, pseudogene 1
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr X:141,792,589...141,795,257
G
Suv39h2
SUV39H2 histone lysine methyltransferase
ISO
RGD
PMID:23200123
RGD:7242632
NCBI chr17:74,756,290...74,775,332
Ensembl chr17:74,756,306...74,775,332
G
Suz12
SUZ12 polycomb repressive complex 2 subunit
ISO
RGD
PMID:23473600 PMID:24148750
RGD:9479058 , RGD:9479059
NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
G
Taf1
TATA-box binding protein associated factor 1
ISO
RGD
PMID:23642229 PMID:24686119
RGD:9479074 , RGD:9479075
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
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Tdrd3
tudor domain containing 3
ISO
RGD
PMID:24035451 PMID:23211769
RGD:9479148 , RGD:9479163
NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110
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Tp53bp1
tumor protein p53 binding protein 1
ISO
RGD
PMID:24035451 PMID:23642229
RGD:9479148 , RGD:9479074
NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
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Trim24
tripartite motif-containing 24
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241
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Trim33
tripartite motif-containing 33
ISO
RGD
PMID:23642229 PMID:24686119
RGD:9479074 , RGD:9479075
NCBI chr 2:190,812,329...190,892,663
Ensembl chr 2:190,807,243...190,888,814
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Uhrf1
ubiquitin-like with PHD and ring finger domains 1
ISO
RGD
PMID:24035451 PMID:23642229
RGD:9479148 , RGD:9479074
NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
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Usp12
ubiquitin specific peptidase 12
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr12:8,309,845...8,363,686
Ensembl chr12:8,309,750...8,363,656
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Usp16
ubiquitin specific peptidase 16
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr11:26,681,359...26,711,313
Ensembl chr11:26,681,414...26,710,539
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Usp21
ubiquitin specific peptidase 21
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717
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Usp22
ubiquitin specific peptidase 22
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr10:45,828,619...45,855,468
Ensembl chr10:45,828,622...45,855,497
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Usp3
ubiquitin specific peptidase 3
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111
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Usp44
ubiquitin specific peptidase 44
ISO
RGD
PMID:24647359
RGD:9479061
NCBI chr 7:28,364,169...28,412,039
Ensembl chr 7:28,364,033...28,410,053
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Uty
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
ISO
RGD
PMID:22663077 PMID:23200123
RGD:9479053 , RGD:7242632
NCBI chr Y:942,838...1,105,313
Ensembl chr Y:924,168...1,103,422
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Wdr5
WD repeat domain 5
ISO
RGD
PMID:22663077 PMID:23642229
RGD:9479053 , RGD:9479074
NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
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Wdr82
WD repeat domain 82
ISO
RGD
PMID:22663077
RGD:9479053
NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
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Ywhaz
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
ISO
RGD
PMID:23642229
RGD:9479074
NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all