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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:DNA damage response pathway
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Accession:PW:0001360 term browser browse the term
Definition:The response mechanism/pathways that assure the maintenance of genomic integrity. This involves detection of DNA damage, signaling and amplification of the signal leading to activation of effectors and resulting in repair of damage, cell cycle arrest or, if necessary, cell death. Such response mechanism/pathways may operate collectively with some of their components being shared.
Synonyms:related_synonym: DDR pathway



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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IMP in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 TAS RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896
JBrowse link
G MSH2 mutS homolog 2 TAS RGD PMID:11900875 RGD:2306714 NCBI chr 2:47,403,067...47,709,830
Ensembl chr 2:47,403,067...47,663,146
JBrowse link
G MSH6 mutS homolog 6 TAS RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 2:47,783,145...47,810,101
Ensembl chr 2:47,695,530...47,810,063
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component TAS RGD PMID:11900875 RGD:2306714 NCBI chr 2:189,784,450...189,877,629
Ensembl chr 2:189,784,085...189,877,629
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component TAS RGD PMID:11900875 RGD:2306714 NCBI chr 7:5,970,925...6,009,106
Ensembl chr 7:5,970,925...6,009,130
JBrowse link
altered nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB1 damage specific DNA binding protein 1 TAS RGD PMID:22824526 RGD:7246919 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit TAS
IMP
in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP RGD PMID:22824526 PMID:24004570 RGD:7246919, RGD:9588971 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease TAS RGD PMID:22824526 RGD:7246919 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073
JBrowse link
G XPA XPA, DNA damage recognition and repair factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr 3:14,145,147...14,178,601
Ensembl chr 3:14,145,145...14,178,621
JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A TAS RGD PMID:23355908 RGD:8694154 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407
JBrowse link
G ARID1A AT-rich interaction domain 1A TAS RGD PMID:23355908 RGD:8694154 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104
JBrowse link
G ARID1B AT-rich interaction domain 1B TAS RGD PMID:23355908 RGD:8694154 NCBI chr 6:156,776,026...157,210,779
Ensembl chr 6:156,776,020...157,210,779
JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:23355908 RGD:8694154 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 TAS RGD PMID:23355908 RGD:8694154 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426
JBrowse link
ataxia telangiectasia-mutated (ATM) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase TAS RGD PMID:23532176 PMID:21533982 RGD:8661225, RGD:8661232 NCBI chr11:108,223,067...108,369,102
Ensembl chr11:108,222,804...108,369,102
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B TAS RGD PMID:24002223 RGD:8661242 NCBI chr 7:73,440,406...73,522,293
Ensembl chr 7:73,440,406...73,522,293
JBrowse link
G BRCA1 BRCA1 DNA repair associated TAS RGD PMID:24326623 RGD:8661237 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 TAS RGD PMID:24002223 RGD:8661242 NCBI chr  X:155,071,508...155,123,077
Ensembl chr  X:155,071,420...155,123,077
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 8:71,197,433...71,548,094
Ensembl chr 8:71,197,433...71,592,025
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 1:27,970,344...28,088,610
Ensembl chr 1:27,970,344...28,088,637
JBrowse link
G H2AX H2A.X variant histone TAS RGD PMID:21533982 PMID:24002223 RGD:8661232, RGD:8661242 NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,874...119,095,465
JBrowse link
G KAT5 lysine acetyltransferase 5 TAS RGD PMID:23532176 PMID:21533982 RGD:8661225, RGD:8661232 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604
JBrowse link
G KDM4A lysine demethylase 4A TAS RGD PMID:24326623 PMID:24002223 RGD:8661237, RGD:8661242 NCBI chr 1:43,650,149...43,705,518
Ensembl chr 1:43,650,149...43,705,518
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 TAS RGD PMID:24326623 PMID:24002223 RGD:8661237, RGD:8661242 NCBI chr20:43,507,697...43,550,954
Ensembl chr20:43,489,442...43,550,954
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 TAS RGD PMID:21533982 PMID:24002223 RGD:8661232, RGD:8661242 NCBI chr 6:30,699,807...30,717,281
Ensembl chr 6:30,699,807...30,717,447
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease TAS RGD PMID:21533982 RGD:8661232 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885
JBrowse link
G NBN nibrin TAS RGD PMID:21533982 RGD:8661232 NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228
JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 TAS RGD PMID:24002223 RGD:8661242 NCBI chr11:63,986,438...63,998,412
Ensembl chr11:63,985,853...64,001,811
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 TAS RGD PMID:24002223 RGD:8661242 NCBI chr15:68,054,315...68,193,847
Ensembl chr15:68,054,309...68,198,603
JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 TAS RGD PMID:24002223 RGD:8661242 NCBI chr19:4,007,736...4,039,386
Ensembl chr19:4,007,736...4,039,386
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D TAS RGD PMID:21533982 PMID:24002223 RGD:8661232, RGD:8661242 NCBI chr17:60,600,193...60,666,280
Ensembl chr17:60,600,193...60,666,280
JBrowse link
G PPP2CA protein phosphatase 2 catalytic subunit alpha TAS RGD PMID:21533982 PMID:24002223 RGD:8661232, RGD:8661242 NCBI chr 5:134,194,332...134,226,073
Ensembl chr 5:134,193,978...134,226,073
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit TAS RGD PMID:24002223 RGD:8661242 NCBI chr16:30,075,994...30,085,376
Ensembl chr16:30,075,978...30,085,376
JBrowse link
G PPP5C protein phosphatase 5 catalytic subunit TAS RGD PMID:21533982 RGD:8661232 NCBI chr19:46,347,087...46,390,975
Ensembl chr19:46,347,087...46,392,981
JBrowse link
G PPP6C protein phosphatase 6 catalytic subunit TAS RGD PMID:24002223 RGD:8661242 NCBI chr 9:125,146,573...125,189,803
Ensembl chr 9:125,146,573...125,189,939
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 2:161,308,425...161,411,717
Ensembl chr 2:161,308,425...161,411,717
JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor TAS RGD PMID:24326623 RGD:8661237 NCBI chr19:1,354,959...1,378,429
Ensembl chr19:1,354,711...1,378,431
JBrowse link
G RAD50 RAD50 double strand break repair protein TAS RGD PMID:21533982 RGD:8661232 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349
JBrowse link
G RBBP8 RB binding protein 8, endonuclease TAS RGD PMID:24326623 RGD:8661237 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488
JBrowse link
G RIF1 replication timing regulatory factor 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr 2:151,409,902...151,534,435
Ensembl chr 2:151,409,883...151,508,013
JBrowse link
G RNF168 ring finger protein 168 TAS RGD PMID:21533982 PMID:24326623 RGD:8661232, RGD:8661237 NCBI chr 3:196,468,783...196,503,768
Ensembl chr 3:196,468,783...196,503,768
JBrowse link
G RNF20 ring finger protein 20 TAS RGD PMID:23532176 RGD:8661225 NCBI chr 9:101,533,853...101,563,344
Ensembl chr 9:101,533,853...101,563,344
JBrowse link
G RNF4 ring finger protein 4 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 4:2,469,106...2,515,857
Ensembl chr 4:2,462,220...2,515,857
JBrowse link
G RNF40 ring finger protein 40 TAS RGD PMID:23532176 RGD:8661225 NCBI chr16:30,761,612...30,776,307
Ensembl chr16:30,761,745...30,776,307
JBrowse link
G RNF8 ring finger protein 8 TAS RGD PMID:21533982 PMID:24326623 RGD:8661232, RGD:8661237 NCBI chr 6:37,353,983...37,394,734
Ensembl chr 6:37,353,979...37,394,734
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr15:43,403,061...43,510,640
Ensembl chr15:43,403,061...43,510,728
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 2:229,763,837...229,923,186
Ensembl chr 2:229,763,837...229,923,239
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N TAS RGD PMID:21533982 PMID:24326623 RGD:8661232, RGD:8661237 NCBI chr12:93,405,684...93,441,947
Ensembl chr12:93,405,673...93,441,947
JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 TAS RGD PMID:24002223 RGD:8661242 NCBI chr 8:102,252,273...102,412,700
Ensembl chr 8:102,252,273...102,412,759
JBrowse link
G USP16 ubiquitin specific peptidase 16 TAS RGD PMID:24002223 RGD:8661242 NCBI chr21:29,024,668...29,054,488
Ensembl chr21:29,024,629...29,054,488
JBrowse link
G USP3 ubiquitin specific peptidase 3 TAS RGD PMID:24002223 RGD:8661242 NCBI chr15:63,504,593...63,594,633
Ensembl chr15:63,504,511...63,594,640
JBrowse link
G USP44 ubiquitin specific peptidase 44 TAS RGD PMID:24002223 RGD:8661242 NCBI chr12:95,516,560...95,551,681
Ensembl chr12:95,516,560...95,551,476
JBrowse link
G VCP valosin containing protein TAS RGD PMID:24326623 PMID:24002223 RGD:8661237, RGD:8661242 NCBI chr 9:35,056,064...35,072,625
Ensembl chr 9:35,053,928...35,072,668
JBrowse link
base excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA KEGG hsa:03410 NCBI chr14:20,455,226...20,457,767
Ensembl chr14:20,455,191...20,457,772
JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA KEGG hsa:03410 NCBI chr  X:55,000,363...55,009,057
Ensembl chr  X:55,000,363...55,009,057
JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA KEGG hsa:03410 NCBI chr11:61,792,911...61,797,238
Ensembl chr11:61,792,911...61,797,238
JBrowse link
G HMGB1 high mobility group box 1 IEA KEGG hsa:03410 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597
JBrowse link
G LIG1 DNA ligase 1 IEA KEGG
RGD
PMID: hsa:03410, RGD:1358139 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603
JBrowse link
G LIG3 DNA ligase 3 IEA KEGG hsa:03410 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743
JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IEA KEGG hsa:03410 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179
JBrowse link
G MPG N-methylpurine DNA glycosylase IEA KEGG
RGD
PMID: hsa:03410, RGD:1358139 NCBI chr16:77,007...85,846
Ensembl chr16:77,007...85,851
JBrowse link
G MUTYH mutY DNA glycosylase IEA KEGG hsa:03410 NCBI chr 1:45,329,242...45,340,440
Ensembl chr 1:45,329,163...45,340,893
JBrowse link
G NEIL1 nei like DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr15:75,347,039...75,357,115
Ensembl chr15:75,346,955...75,357,115
JBrowse link
G NEIL2 nei like DNA glycosylase 2 IEA KEGG hsa:03410 NCBI chr 8:11,769,710...11,787,345
Ensembl chr 8:11,769,639...11,787,345
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA KEGG hsa:03410 NCBI chr 4:177,309,874...177,371,268
Ensembl chr 4:177,309,874...177,362,936
JBrowse link
G NTHL1 nth like DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr16:2,039,820...2,047,834
Ensembl chr16:2,039,815...2,047,866
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase TAS
IEA
KEGG
RGD
PMID:16221808 hsa:03410, RGD:1578408 NCBI chr 3:9,749,952...9,783,108
Ensembl chr 3:9,749,944...9,788,219
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA KEGG hsa:03410 NCBI chr 1:226,360,691...226,408,093
Ensembl chr 1:226,360,210...226,408,154
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA KEGG hsa:03410 NCBI chr14:20,343,635...20,357,904
Ensembl chr14:20,343,615...20,357,904
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IEA KEGG hsa:03410 NCBI chr 3:51,942,363...51,948,867
Ensembl chr 3:51,942,345...51,948,867
JBrowse link
G PARP4 poly(ADP-ribose) polymerase family member 4 IEA KEGG hsa:03410 NCBI chr13:24,420,931...24,512,778
Ensembl chr13:24,420,931...24,512,778
JBrowse link
G PCNA proliferating cell nuclear antigen IEA KEGG hsa:03410 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626
JBrowse link
G POLB DNA polymerase beta IEA KEGG hsa:03410 NCBI chr 8:42,338,494...42,371,808
Ensembl chr 8:42,338,454...42,371,808
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA KEGG hsa:03410 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA KEGG hsa:03410 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA KEGG hsa:03410 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA KEGG hsa:03410 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA KEGG hsa:03410 NCBI chr12:132,623,762...132,687,342
Ensembl chr12:132,623,753...132,687,376
JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IEA KEGG hsa:03410 NCBI chr14:49,643,555...49,688,214
Ensembl chr14:49,643,555...49,688,422
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IEA KEGG hsa:03410 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675
JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit IEA KEGG hsa:03410 NCBI chr 2:74,958,643...74,970,128
Ensembl chr 2:74,958,643...74,970,128
JBrowse link
G POLL DNA polymerase lambda IEA KEGG hsa:03410 NCBI chr10:101,578,882...101,588,270
Ensembl chr10:101,578,882...101,588,270
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr12:54,158,235...54,188,985
Ensembl chr12:54,121,277...54,189,008
JBrowse link
G TDG thymine DNA glycosylase IEA KEGG hsa:03410 NCBI chr12:103,965,872...103,988,874
Ensembl chr12:103,965,822...103,988,874
JBrowse link
G UNG uracil DNA glycosylase IEA KEGG hsa:03410 NCBI chr12:109,097,597...109,110,992
Ensembl chr12:109,097,597...109,126,725
JBrowse link
G XRCC1 X-ray repair cross complementing 1 TAS
IEA
KEGG
RGD
PMID:16221808 hsa:03410, RGD:1578408 NCBI chr19:43,543,311...43,575,527
Ensembl chr19:43,543,311...43,580,473
JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD3 chromodomain helicase DNA binding protein 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr17:7,884,796...7,912,755
Ensembl chr17:7,884,796...7,912,760
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 TAS RGD PMID:24880148 RGD:9585661 NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:6,101,787...6,180,321
Ensembl chr 1:6,101,787...6,180,321
JBrowse link
G GATAD2A GATA zinc finger domain containing 2A TAS RGD PMID:24880148 RGD:9585661 NCBI chr19:19,385,843...19,508,932
Ensembl chr19:19,385,826...19,508,932
JBrowse link
G GATAD2B GATA zinc finger domain containing 2B TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:153,804,725...153,922,972
Ensembl chr 1:153,789,030...153,923,360
JBrowse link
G HDAC1 histone deacetylase 1 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC2 histone deacetylase 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865
JBrowse link
G MTA1 metastasis associated 1 TAS RGD PMID:24880148 RGD:9585661 NCBI chr14:105,419,827...105,470,729
Ensembl chr14:105,419,820...105,470,729
JBrowse link
G MTA2 metastasis associated 1 family member 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865
JBrowse link
G MTA3 metastasis associated 1 family member 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 2:42,494,110...42,756,946
Ensembl chr 2:42,494,569...42,756,947
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor TAS RGD PMID:24880148 RGD:9585661 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,362
JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXXC1 CXXC finger protein 1 TAS RGD PMID:23697932 RGD:9479164 NCBI chr18:50,282,347...50,287,692
Ensembl chr18:50,282,343...50,287,839
JBrowse link
G DNMT1 DNA methyltransferase 1 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr19:10,133,346...10,194,953
Ensembl chr19:10,133,342...10,231,286
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 2:25,227,874...25,342,590
Ensembl chr 2:25,227,855...25,342,590
JBrowse link
G DNMT3B DNA methyltransferase 3 beta TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr20:32,762,385...32,809,356
Ensembl chr20:32,762,385...32,809,359
JBrowse link
G EBF1 EBF transcription factor 1 TAS RGD PMID:24825349 RGD:8695944 NCBI chr 5:158,695,920...159,099,916
Ensembl chr 5:158,695,920...159,099,916
JBrowse link
G KDM2A lysine demethylase 2A TAS RGD PMID:23697932 RGD:9479164 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082
JBrowse link
G KDM2B lysine demethylase 2B TAS RGD PMID:23697932 RGD:9479164 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,582,279
JBrowse link
G KMT2A lysine methyltransferase 2A TAS RGD PMID:23697932 RGD:9479164 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,456...118,526,832
JBrowse link
G KMT2C lysine methyltransferase 2C TAS RGD PMID:23697932 RGD:9479164 NCBI chr 7:152,134,925...152,436,003
Ensembl chr 7:152,134,922...152,436,644
JBrowse link
G MBD1 methyl-CpG binding domain protein 1 TAS RGD PMID:23324617 RGD:8695954 NCBI chr18:50,266,885...50,281,767
Ensembl chr18:50,266,882...50,281,774
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669
JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase TAS RGD PMID:23324617 RGD:8695954 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179
JBrowse link
G MECP2 methyl-CpG binding protein 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G NANOG Nanog homeobox TAS RGD PMID:24825349 RGD:8695944 NCBI chr12:7,789,402...7,799,146
Ensembl chr12:7,787,794...7,799,146
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase TAS RGD PMID:24825349 RGD:8695944 NCBI chr  X:71,533,104...71,575,892
Ensembl chr  X:71,533,087...71,575,892
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma TAS RGD PMID:24825349 RGD:8695944 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356
JBrowse link
G PRDM14 PR/SET domain 14 TAS RGD PMID:24825349 RGD:8695944 NCBI chr 8:70,051,651...70,071,252
Ensembl chr 8:70,051,651...70,071,693
JBrowse link
G SIN3A SIN3 transcription regulator family member A TAS RGD PMID:24825349 RGD:8695944 NCBI chr15:75,369,379...75,455,815
Ensembl chr15:75,369,379...75,455,842
JBrowse link
G SPI1 Spi-1 proto-oncogene TAS RGD PMID:24825349 RGD:8695944 NCBI chr11:47,354,860...47,378,547
Ensembl chr11:47,354,860...47,409,369
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr10:68,560,337...68,694,487
Ensembl chr10:68,560,337...68,694,487
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 4:105,145,875...105,279,803
Ensembl chr 4:105,145,875...105,279,816
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 TAS RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943, RGD:9479164, RGD:8695944 NCBI chr 2:73,983,631...74,135,498
Ensembl chr 2:73,984,910...74,108,177
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 TAS RGD PMID:23324617 RGD:8695954 NCBI chr19:4,903,080...4,962,154
Ensembl chr19:4,903,080...4,962,154
JBrowse link
G UHRF2 ubiquitin like with PHD and ring finger domains 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr 9:6,413,199...6,507,054
Ensembl chr 9:6,413,151...6,507,056
JBrowse link
G ZBTB33 zinc finger and BTB domain containing 33 TAS RGD PMID:23324617 RGD:8695954 NCBI chr  X:120,250,812...120,258,398
Ensembl chr  X:120,250,752...120,258,398
JBrowse link
G ZBTB38 zinc finger and BTB domain containing 38 TAS RGD PMID:23324617 RGD:8695954 NCBI chr 3:141,324,186...141,449,792
Ensembl chr 3:141,324,213...141,449,792
JBrowse link
G ZBTB4 zinc finger and BTB domain containing 4 TAS RGD PMID:23324617 RGD:8695954 NCBI chr17:7,459,378...7,484,249
Ensembl chr17:7,459,366...7,484,263
JBrowse link
G ZFP57 ZFP57 zinc finger protein TAS RGD PMID:23324617 RGD:8695954 NCBI chr 6:29,672,392...29,681,152
Ensembl chr 6:29,672,483...29,681,155
JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEBP2 AE binding protein 2 TAS RGD PMID:24148750 RGD:9479059 NCBI chr12:19,404,072...19,522,227
Ensembl chr12:19,404,045...19,720,801
JBrowse link
G APLF aprataxin and PNKP like factor TAS RGD PMID:23288364 RGD:9068945 NCBI chr 2:68,467,585...68,580,162
Ensembl chr 2:68,467,572...68,655,862
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone TAS RGD PMID:23288364 RGD:9068945 NCBI chr 6:118,894,152...118,909,171
Ensembl chr 6:118,894,152...118,909,171
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone TAS RGD PMID:23288364 RGD:9068945 NCBI chr19:14,119,512...14,136,589
Ensembl chr19:14,119,512...14,136,613
JBrowse link
G ASH1L ASH1 like histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:155,335,268...155,563,202
Ensembl chr 1:155,335,268...155,563,162
JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 8:38,105,493...38,140,080
Ensembl chr 8:38,105,493...38,144,076
JBrowse link
G BAP1 BRCA1 associated deubiquitinase 1 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 3:52,401,008...52,410,008
Ensembl chr 3:52,401,008...52,410,008
JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 TAS RGD PMID:23642229 RGD:9479074 NCBI chr17:78,214,253...78,225,635
Ensembl chr17:78,214,186...78,225,636
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:22,321,099...22,331,706
Ensembl chr10:22,321,099...22,331,484
JBrowse link
G BPTF bromodomain PHD finger transcription factor TAS RGD PMID:24686119 PMID:23642229 RGD:9479075, RGD:9479074 NCBI chr17:67,825,503...67,984,378
Ensembl chr17:67,825,503...67,984,378
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 TAS RGD PMID:24647359 RGD:9479061 NCBI chr  X:155,071,508...155,123,077
Ensembl chr  X:155,071,420...155,123,077
JBrowse link
G BRD1 bromodomain containing 1 TAS RGD PMID:24686119 RGD:9479075 NCBI chr22:49,773,278...49,827,873
Ensembl chr22:49,773,278...49,827,873
JBrowse link
G BRD2 bromodomain containing 2 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505
JBrowse link
G BRD3 bromodomain containing 3 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 9:134,030,305...134,068,548
Ensembl chr 9:134,030,305...134,068,535
JBrowse link
G BRD4 bromodomain containing 4 TAS RGD PMID:24686119 RGD:9479075 NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545
JBrowse link
G BRD7 bromodomain containing 7 TAS RGD PMID:24686119 RGD:9479075 NCBI chr16:50,315,957...50,368,988
Ensembl chr16:50,313,487...50,368,988
JBrowse link
G BRDT bromodomain testis associated TAS RGD PMID:24686119 RGD:9479075 NCBI chr 1:91,949,371...92,014,428
Ensembl chr 1:91,949,343...92,014,426
JBrowse link
G BRF1 BRF1 general transcription factor IIIB subunit TAS RGD PMID:23642229 RGD:9479074 NCBI chr14:105,209,286...105,315,589
Ensembl chr14:105,209,286...105,315,589
JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 TAS RGD PMID:24583552 RGD:9479047 NCBI chr19:10,871,553...10,923,075
Ensembl chr19:10,871,553...10,923,075
JBrowse link
G CBX2 chromobox 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,777,311...79,787,983
Ensembl chr17:79,778,148...79,787,983
JBrowse link
G CBX4 chromobox 4 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,833,156...79,839,440
Ensembl chr17:79,833,156...79,839,440
JBrowse link
G CBX5 chromobox 5 TAS RGD PMID:23642229 RGD:9479074 NCBI chr12:54,230,942...54,280,122
Ensembl chr12:54,230,942...54,280,133
JBrowse link
G CBX6 chromobox 6 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr22:38,861,422...38,872,216
Ensembl chr22:38,861,422...38,872,249
JBrowse link
G CBX7 chromobox 7 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr22:39,130,772...39,152,680
Ensembl chr22:39,120,167...39,152,680
JBrowse link
G CBX8 chromobox 8 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,792,132...79,797,077
Ensembl chr17:79,792,132...79,801,683
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A TAS RGD PMID:23288364 RGD:9068945 NCBI chr19:4,402,640...4,450,830
Ensembl chr19:4,402,640...4,445,018
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B TAS RGD PMID:23288364 RGD:9068945 NCBI chr21:36,385,392...36,419,015
Ensembl chr21:36,385,392...36,419,015
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 5:98,853,985...98,929,007
Ensembl chr 5:98,853,985...98,929,007
JBrowse link
G CREBBP CREB binding protein TAS RGD PMID:21151613 PMID:24686119 RGD:9104959, RGD:9479075 NCBI chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713
JBrowse link
G CXXC1 CXXC finger protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr18:50,282,347...50,287,692
Ensembl chr18:50,282,343...50,287,839
JBrowse link
G DAXX death domain associated protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 6:33,318,558...33,322,959
Ensembl chr 6:33,318,558...33,323,016
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:2,163,933...2,232,578
Ensembl chr19:2,163,933...2,232,578
JBrowse link
G DPF3 double PHD fingers 3 TAS RGD PMID:23642229 RGD:9479074 NCBI chr14:72,609,034...72,894,101
Ensembl chr14:72,609,034...72,894,101
JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 2:32,011,649...32,039,835
Ensembl chr 2:31,867,809...32,039,805
JBrowse link
G EHMT1 euchromatic histone lysine methyltransferase 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:137,619,005...137,836,127
Ensembl chr 9:137,618,992...137,870,016
JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 TAS RGD PMID:23200123 PMID:23642229 RGD:7242632, RGD:9479074 NCBI chr 6:31,879,759...31,897,698
Ensembl chr 6:31,879,759...31,897,698
JBrowse link
G EP300 E1A binding protein p300 TAS RGD PMID:21151613 RGD:9104959 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:148,807,383...148,884,291
Ensembl chr 7:148,807,257...148,884,321
JBrowse link
G H2AX H2A.X variant histone TAS RGD PMID:24614311 RGD:9075965 NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,874...119,095,465
JBrowse link
G H2AZ1 H2A.Z variant histone 1 TAS RGD PMID:24696452 RGD:9074213 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355
JBrowse link
G H3-3A H3.3 histone A TAS RGD PMID:24614311 RGD:9075965 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019
JBrowse link
G H3-3B H3.3 histone B TAS RGD PMID:24614311 RGD:9075965 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893
JBrowse link
G HAT1 histone acetyltransferase 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 2:171,922,461...171,983,686
Ensembl chr 2:171,922,448...171,983,686
JBrowse link
G HCFC1 host cell factor C1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr  X:153,947,557...153,971,818
Ensembl chr  X:153,947,557...153,971,818
JBrowse link
G HDAC1 histone deacetylase 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC10 histone deacetylase 10 TAS RGD PMID:21151613 RGD:9104959 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405
JBrowse link
G HDAC11 histone deacetylase 11 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 3:13,480,306...13,506,416
Ensembl chr 3:13,479,724...13,506,424
JBrowse link
G HDAC2 histone deacetylase 2 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G HDAC3 histone deacetylase 3 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849
JBrowse link
G HDAC4 histone deacetylase 4 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654
JBrowse link
G HDAC5 histone deacetylase 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:44,076,753...44,123,641
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HDAC6 histone deacetylase 6 TAS RGD PMID:21151613 RGD:9104959 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
G HDAC7 histone deacetylase 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr12:47,782,722...47,821,344
Ensembl chr12:47,782,722...47,833,132
JBrowse link
G HDAC8 histone deacetylase 8 TAS RGD PMID:21151613 RGD:9104959 NCBI chr  X:72,329,516...72,572,843
Ensembl chr  X:72,329,516...72,573,101
JBrowse link
G HDAC9 histone deacetylase 9 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
G HIRA histone cell cycle regulator TAS RGD PMID:23288364 RGD:9068945 NCBI chr22:19,330,698...19,431,733
Ensembl chr22:19,330,698...19,447,450
JBrowse link
G HJURP Holliday junction recognition protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 2:233,836,702...233,854,535
Ensembl chr 2:233,833,416...233,854,566
JBrowse link
G ING2 inhibitor of growth family member 2 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 4:183,505,058...183,512,429
Ensembl chr 4:183,505,058...183,512,429
JBrowse link
G JMJD1C jumonji domain containing 1C TAS RGD PMID:23200123 RGD:7242632 NCBI chr10:63,167,225...63,521,890
Ensembl chr10:63,167,221...63,521,850
JBrowse link
G KAT2A lysine acetyltransferase 2A TAS RGD PMID:21151613 PMID:23642229 RGD:9104959, RGD:9479074 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G KAT2B lysine acetyltransferase 2B TAS RGD PMID:21151613 RGD:9104959 NCBI chr 3:20,040,446...20,154,404
Ensembl chr 3:20,040,446...20,154,404
JBrowse link
G KAT5 lysine acetyltransferase 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604
JBrowse link
G KAT6A lysine acetyltransferase 6A TAS RGD PMID:21151613 RGD:9104959 NCBI chr 8:41,929,479...42,051,987
Ensembl chr 8:41,929,479...42,051,994
JBrowse link
G KAT6B lysine acetyltransferase 6B TAS RGD PMID:21151613 RGD:9104959 NCBI chr10:74,824,936...75,032,624
Ensembl chr10:74,824,927...75,032,624
JBrowse link
G KAT7 lysine acetyltransferase 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:49,788,681...49,835,026
Ensembl chr17:49,788,624...49,835,026
JBrowse link
G KAT8 lysine acetyltransferase 8 TAS RGD PMID:21151613 RGD:9104959 NCBI chr16:31,117,664...31,131,393
Ensembl chr16:31,114,489...31,131,393
JBrowse link
G KDM1A lysine demethylase 1A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:23,019,468...23,083,689
Ensembl chr 1:23,019,443...23,083,689
JBrowse link
G KDM1B lysine demethylase 1B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 6:18,155,422...18,223,854
Ensembl chr 6:18,155,329...18,223,854
JBrowse link
G KDM2A lysine demethylase 2A TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082
JBrowse link
G KDM2B lysine demethylase 2B TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,582,279
JBrowse link
G KDM3A lysine demethylase 3A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 2:86,437,044...86,492,716
Ensembl chr 2:86,440,647...86,492,716
JBrowse link
G KDM3B lysine demethylase 3B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:138,352,685...138,437,027
Ensembl chr 5:138,352,685...138,437,028
JBrowse link
G KDM4A lysine demethylase 4A TAS RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632, RGD:9479074, RGD:9479148 NCBI chr 1:43,650,149...43,705,518
Ensembl chr 1:43,650,149...43,705,518
JBrowse link
G KDM4B lysine demethylase 4B TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:4,969,113...5,153,598
Ensembl chr19:4,969,113...5,153,611
JBrowse link
G KDM4C lysine demethylase 4C TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:6,720,863...7,175,648
Ensembl chr 9:6,720,863...7,175,648
JBrowse link
G KDM4D lysine demethylase 4D TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:94,973,709...94,999,519
Ensembl chr11:94,973,709...94,999,519
JBrowse link
G KDM5A lysine demethylase 5A TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:280,057...389,320
Ensembl chr12:280,057...389,320
JBrowse link
G KDM5B lysine demethylase 5B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:202,724,495...202,808,421
Ensembl chr 1:202,724,495...202,808,487
JBrowse link
G KDM5C lysine demethylase 5C TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:53,176,277...53,225,207
Ensembl chr  X:53,176,277...53,225,422
JBrowse link
G KDM5D lysine demethylase 5D TAS RGD PMID:23200123 RGD:7242632 NCBI chr  Y:19,703,865...19,744,726
Ensembl chr  Y:19,703,865...19,744,939
JBrowse link
G KDM6A lysine demethylase 6A TAS RGD PMID:22663077 PMID:23200123 RGD:9479053, RGD:7242632 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779
JBrowse link
G KDM6B lysine demethylase 6B TAS RGD PMID:23200123 RGD:7242632 NCBI chr17:7,834,217...7,854,796
Ensembl chr17:7,834,217...7,854,796
JBrowse link
G KDM7A lysine demethylase 7A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:140,084,746...140,176,983
Ensembl chr 7:140,084,746...140,176,983
JBrowse link
G KDM8 lysine demethylase 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr16:27,203,526...27,221,768
Ensembl chr16:27,203,508...27,221,768
JBrowse link
G KMT2A lysine methyltransferase 2A TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,456...118,526,832
JBrowse link
G KMT2B lysine methyltransferase 2B TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr19:35,718,003...35,738,878
Ensembl chr19:35,717,973...35,738,880
JBrowse link
G KMT2C lysine methyltransferase 2C TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 7:152,134,925...152,436,003
Ensembl chr 7:152,134,922...152,436,644
JBrowse link
G KMT2D lysine methyltransferase 2D TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr12:49,018,978...49,060,794
Ensembl chr12:49,018,975...49,060,794
JBrowse link
G KMT2E lysine methyltransferase 2E (inactive) TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:105,014,205...105,115,019
Ensembl chr 7:104,940,943...105,115,019
JBrowse link
G KMT5A lysine methyltransferase 5A TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:123,384,132...123,409,353
Ensembl chr12:123,384,132...123,409,353
JBrowse link
G KMT5B lysine methyltransferase 5B TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:68,154,863...68,213,648
Ensembl chr11:68,154,863...68,213,852
JBrowse link
G KMT5C lysine methyltransferase 5C TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:55,339,876...55,348,121
Ensembl chr19:55,339,853...55,348,121
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr20:43,507,697...43,550,954
Ensembl chr20:43,489,442...43,550,954
JBrowse link
G LBR lamin B receptor TAS RGD PMID:24035451 RGD:9479148 NCBI chr 1:225,401,502...225,428,821
Ensembl chr 1:225,401,502...225,428,925
JBrowse link
G MACROH2A1 macroH2A.1 histone TAS RGD PMID:24696452 RGD:9074213 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914
JBrowse link
G MACROH2A2 macroH2A.2 histone TAS RGD PMID:24696452 RGD:9074213 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282
JBrowse link
G MCPH1 microcephalin 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 8:6,406,627...6,648,508
Ensembl chr 8:6,406,592...6,648,508
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 6:30,699,807...30,717,281
Ensembl chr 6:30,699,807...30,717,447
JBrowse link
G MEN1 menin 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr11:64,803,516...64,811,294
Ensembl chr11:64,803,510...64,811,294
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 1:58,654,743...58,700,062
Ensembl chr 1:58,643,440...58,700,090
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 TAS RGD PMID:23288364 RGD:9068945 NCBI chr12:76,036,585...76,084,685
Ensembl chr12:76,036,585...76,084,735
JBrowse link
G NASP nuclear autoantigenic sperm protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 1:45,584,041...45,618,893
Ensembl chr 1:45,583,846...45,618,904
JBrowse link
G NCOA6 nuclear receptor coactivator 6 TAS RGD PMID:22663077 RGD:9479053 NCBI chr20:34,714,774...34,825,651
Ensembl chr20:34,689,097...34,825,651
JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:177,131,798...177,300,213
Ensembl chr 5:177,131,830...177,300,213
JBrowse link
G NSD3 nuclear receptor binding SET domain protein 3 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 8:38,269,704...38,382,271
Ensembl chr 8:38,269,704...38,382,272
JBrowse link
G ORC1 origin recognition complex subunit 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 1:52,372,829...52,409,503
Ensembl chr 1:52,372,829...52,404,423
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr16:29,816,152...29,822,489
Ensembl chr16:29,816,152...29,822,489
JBrowse link
G PAXIP1 PAX interacting protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr 7:154,943,690...155,003,411
Ensembl chr 7:154,943,687...155,003,124
JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917
JBrowse link
G PCGF1 polycomb group ring finger 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 2:74,505,043...74,507,695
Ensembl chr 2:74,505,043...74,507,695
JBrowse link
G PCGF2 polycomb group ring finger 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:38,733,898...38,749,792
Ensembl chr17:38,733,898...38,749,817
JBrowse link
G PCGF3 polycomb group ring finger 3 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:705,832...770,089
Ensembl chr 4:705,748...770,089
JBrowse link
G PCGF5 polycomb group ring finger 5 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:91,156,219...91,284,337
Ensembl chr10:91,163,012...91,284,337
JBrowse link
G PCGF6 polycomb group ring finger 6 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:103,302,796...103,351,140
Ensembl chr10:103,302,796...103,351,144
JBrowse link
G PHC1 polyhomeotic homolog 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr12:8,913,843...8,941,467
Ensembl chr12:8,913,896...8,941,467
JBrowse link
G PHC2 polyhomeotic homolog 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:33,323,626...33,431,095
Ensembl chr 1:33,323,623...33,431,095
JBrowse link
G PHC3 polyhomeotic homolog 3 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 3:170,087,584...170,181,733
Ensembl chr 3:170,086,732...170,181,749
JBrowse link
G PHF1 PHD finger protein 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 6:33,410,412...33,416,439
Ensembl chr 6:33,410,399...33,416,453
JBrowse link
G PHF19 PHD finger protein 19 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 9:120,855,651...120,904,128
Ensembl chr 9:120,855,651...120,894,896
JBrowse link
G PHF2 PHD finger protein 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:93,576,584...93,679,587
Ensembl chr 9:93,576,584...93,679,587
JBrowse link
G PHF8 PHD finger protein 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:53,936,680...54,048,936
Ensembl chr  X:53,936,676...54,048,958
JBrowse link
G PRDM16 PR/SET domain 16 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:3,069,203...3,438,621
Ensembl chr 1:3,069,168...3,438,621
JBrowse link
G PRDM2 PR/SET domain 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:13,700,188...13,825,079
Ensembl chr 1:13,700,188...13,825,079
JBrowse link
G PRDM6 PR/SET domain 6 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:123,089,241...123,194,266
Ensembl chr 5:123,089,241...123,194,266
JBrowse link
G PRDM8 PR/SET domain 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 4:80,185,270...80,204,329
Ensembl chr 4:80,183,879...80,204,329
JBrowse link
G PRDM9 PR/SET domain 9 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:23,507,155...23,528,093
Ensembl chr 5:23,443,586...23,528,093
JBrowse link
G PRMT1 protein arginine methyltransferase 1 TAS RGD PMID:24583552 RGD:9479047 NCBI chr19:49,676,153...49,688,447
Ensembl chr19:49,675,786...49,689,029
JBrowse link
G PRMT2 protein arginine methyltransferase 2 TAS RGD PMID:24583552 RGD:9479047 NCBI chr21:46,635,674...46,665,124
Ensembl chr21:46,635,595...46,665,685
JBrowse link
G PRMT5 protein arginine methyltransferase 5 TAS RGD PMID:24583552 RGD:9479047 NCBI chr14:22,920,529...22,929,376
Ensembl chr14:22,920,525...22,929,408
JBrowse link
G PRMT6 protein arginine methyltransferase 6 TAS RGD PMID:24583552 RGD:9479047 NCBI chr 1:107,056,674...107,059,294
Ensembl chr 1:107,056,674...107,067,636
JBrowse link
G PRMT7 protein arginine methyltransferase 7 TAS RGD PMID:24583552 RGD:9479047 NCBI chr16:68,311,019...68,360,870
Ensembl chr16:68,310,951...68,360,852
JBrowse link
G RAG2 recombination activating 2 TAS RGD PMID:23642229 RGD:9479074 NCBI chr11:36,590,996...36,598,236
Ensembl chr11:36,575,574...36,598,279
JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 1:205,086,142...205,121,978
Ensembl chr 1:205,086,142...205,122,015
JBrowse link
G RING1 ring finger protein 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 6:33,208,500...33,212,716
Ensembl chr 6:33,208,500...33,212,722
JBrowse link
G RNF2 ring finger protein 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:185,045,558...185,102,603
Ensembl chr 1:185,045,497...185,102,603
JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr16:30,957,754...30,984,664
Ensembl chr16:30,957,294...30,984,664
JBrowse link
G SETD1B SET domain containing 1B, histone lysine methyltransferase TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr12:121,790,155...121,832,656
Ensembl chr12:121,804,009...121,832,656
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 3:47,016,436...47,164,840
Ensembl chr 3:47,016,428...47,164,113
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 4:139,492,974...139,556,219
Ensembl chr 4:139,495,941...139,606,699
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:150,926,263...150,964,737
Ensembl chr 1:150,926,263...150,964,744
JBrowse link
G SGF29 SAGA complex associated factor 29 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr16:28,553,920...28,591,790
Ensembl chr16:28,553,915...28,591,790
JBrowse link
G SIRT1 sirtuin 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT2 sirtuin 2 TAS RGD PMID:21151613 RGD:9104959 NCBI chr19:38,878,555...38,899,618
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SIRT3 sirtuin 3 TAS RGD PMID:21151613 RGD:9104959 NCBI chr11:215,030...236,931
Ensembl chr11:215,030...236,931
JBrowse link
G SIRT4 sirtuin 4 TAS RGD PMID:21151613 RGD:9104959 NCBI chr12:120,291,780...120,313,249
Ensembl chr12:120,302,316...120,313,249
JBrowse link
G SIRT5 sirtuin 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 6:13,574,274...13,615,158
Ensembl chr 6:13,574,227...13,615,158
JBrowse link
G SIRT6 sirtuin 6 TAS RGD PMID:21151613 RGD:9104959 NCBI chr19:4,174,109...4,182,563
Ensembl chr19:4,174,109...4,182,566
JBrowse link
G SIRT7 sirtuin 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323
JBrowse link
G SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 9:2,015,347...2,193,620
Ensembl chr 9:1,980,290...2,193,624
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 TAS RGD PMID:24686119 RGD:9479075 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426
JBrowse link
G SMYD1 SET and MYND domain containing 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 2:88,067,825...88,113,384
Ensembl chr 2:88,067,825...88,113,384
JBrowse link
G SMYD2 SET and MYND domain containing 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:214,281,159...214,337,131
Ensembl chr 1:214,281,102...214,337,131
JBrowse link
G SMYD3 SET and MYND domain containing 3 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:245,749,347...246,507,279
Ensembl chr 1:245,749,342...246,507,312
JBrowse link
G SPIN1 spindlin 1 TAS RGD PMID:24035451 RGD:9479148 NCBI chr 9:88,388,444...88,478,694
Ensembl chr 9:88,388,430...88,478,694
JBrowse link
G SSRP1 structure specific recognition protein 1 TAS RGD PMID:23288364 RGD:9068945 NCBI chr11:57,325,988...57,335,892
Ensembl chr11:57,325,986...57,335,892
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit TAS RGD PMID:23288364 RGD:9068945 NCBI chr14:21,351,476...21,384,019
Ensembl chr14:21,351,476...21,384,019
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:48,695,554...48,709,016
Ensembl chr  X:48,695,554...48,709,016
JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr10:14,878,866...14,904,315
Ensembl chr10:14,878,820...14,904,315
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 TAS RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr  X:71,366,357...71,530,525
Ensembl chr  X:71,366,136...71,532,374
JBrowse link
G TDRD3 tudor domain containing 3 TAS RGD PMID:24035451 PMID:23211769 RGD:9479148, RGD:9479163 NCBI chr13:60,395,533...60,573,879
Ensembl chr13:60,396,457...60,573,878
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr15:43,403,061...43,510,640
Ensembl chr15:43,403,061...43,510,728
JBrowse link
G TRIM24 tripartite motif containing 24 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 7:138,460,259...138,589,996
Ensembl chr 7:138,460,259...138,589,996
JBrowse link
G TRIM33 tripartite motif containing 33 TAS RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr 1:114,392,790...114,511,203
Ensembl chr 1:114,392,790...114,511,203
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr19:4,903,080...4,962,154
Ensembl chr19:4,903,080...4,962,154
JBrowse link
G USP12 ubiquitin specific peptidase 12 TAS RGD PMID:24647359 RGD:9479061 NCBI chr13:27,066,156...27,171,811
Ensembl chr13:27,066,156...27,171,811
JBrowse link
G USP16 ubiquitin specific peptidase 16 TAS RGD PMID:24647359 RGD:9479061 NCBI chr21:29,024,668...29,054,488
Ensembl chr21:29,024,629...29,054,488
JBrowse link
G USP21 ubiquitin specific peptidase 21 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 1:161,159,500...161,165,723
Ensembl chr 1:161,159,450...161,165,723
JBrowse link
G USP22 ubiquitin specific peptidase 22 TAS RGD PMID:24647359 RGD:9479061 NCBI chr17:20,999,596...21,043,419
Ensembl chr17:20,999,596...21,043,760
JBrowse link
G USP3 ubiquitin specific peptidase 3 TAS RGD PMID:24647359 RGD:9479061 NCBI chr15:63,504,593...63,594,633
Ensembl chr15:63,504,511...63,594,640
JBrowse link
G USP44 ubiquitin specific peptidase 44 TAS RGD PMID:24647359 RGD:9479061 NCBI chr12:95,516,560...95,551,681
Ensembl chr12:95,516,560...95,551,476
JBrowse link
G WDR5 WD repeat domain 5 TAS RGD PMID:22663077 PMID:23642229 RGD:9479053, RGD:9479074 NCBI chr 9:134,135,199...134,159,968
Ensembl chr 9:134,135,365...134,159,968
JBrowse link
G WDR82 WD repeat domain 82 TAS RGD PMID:22663077 RGD:9479053 NCBI chr 3:52,254,434...52,278,649
Ensembl chr 3:52,254,434...52,288,020
JBrowse link
G YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta TAS RGD PMID:23642229 RGD:9479074 NCBI chr 8:100,916,523...100,953,382
Ensembl chr 8:100,916,523...100,953,388
JBrowse link
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr15:90,717,346...90,816,166
Ensembl chr15:90,717,346...90,816,166
JBrowse link
G BRCA1 BRCA1 DNA repair associated TAS RGD PMID:16498454 PMID:24326623 RGD:1578504, RGD:8661237 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245
JBrowse link
G BRCA2 BRCA2 DNA repair associated IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr13:32,315,077...32,400,268
Ensembl chr13:32,315,086...32,400,268
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 TAS RGD PMID:20690856 RGD:8662366 NCBI chr10:68,414,064...68,472,521
Ensembl chr10:68,414,064...68,472,121
JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 IEA KEGG hsa:03440 NCBI chr17:50,373,229...50,381,483
Ensembl chr17:50,373,220...50,381,483
JBrowse link
G EXO1 exonuclease 1 TAS RGD PMID:20690856 RGD:8662366 NCBI chr 1:241,847,986...241,889,939
Ensembl chr 1:241,847,967...241,895,148
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease TAS
IEA
KEGG
RGD
PMID:16498454 PMID:20690856 hsa:03440, RGD:1578504, RGD:8662366 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885
JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit IEA KEGG hsa:03440 NCBI chr11:65,859,674...65,867,653
Ensembl chr11:65,857,126...65,867,653
JBrowse link
G NBN nibrin IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA KEGG hsa:03440 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA KEGG hsa:03440 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA KEGG hsa:03440 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA KEGG hsa:03440 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972
JBrowse link
G RAD50 RAD50 double strand break repair protein TAS
IEA
KEGG
RGD
PMID:16498454 PMID:20690856 hsa:03440, RGD:1578504, RGD:8662366 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349
JBrowse link
G RAD51 RAD51 recombinase IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr15:40,694,733...40,732,340
Ensembl chr15:40,694,774...40,732,340
JBrowse link
G RAD51B RAD51 paralog B TAS RGD PMID:20690856 RGD:8662366 NCBI chr14:67,819,779...68,683,096
Ensembl chr14:67,819,779...68,730,218
JBrowse link
G RAD51C RAD51 paralog C IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr17:58,692,573...58,735,611
Ensembl chr17:58,692,573...58,735,611
JBrowse link
G RAD51D RAD51 paralog D TAS RGD PMID:20690856 RGD:8662366 NCBI chr17:35,092,221...35,119,860
Ensembl chr17:35,092,221...35,121,522
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA KEGG hsa:03440 NCBI chr12:911,736...991,122
Ensembl chr12:911,736...990,053
JBrowse link
G RAD54B RAD54 homolog B IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 8:94,371,960...94,475,115
Ensembl chr 8:94,371,960...94,475,115
JBrowse link
G RAD54L RAD54 like IEA KEGG hsa:03440 NCBI chr 1:46,247,688...46,278,473
Ensembl chr 1:46,246,461...46,278,480
JBrowse link
G RBBP8 RB binding protein 8, endonuclease TAS RGD PMID:24326623 RGD:8661237 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488
JBrowse link
G RPA1 replication protein A1 IEA KEGG hsa:03440 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082
JBrowse link
G RPA2 replication protein A2 IEA KEGG hsa:03440 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746
JBrowse link
G RPA3 replication protein A3 IEA KEGG hsa:03440 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607
JBrowse link
G RPA4 replication protein A4 IEA KEGG hsa:03440 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467
JBrowse link
G SEM1 SEM1 26S proteasome subunit IEA KEGG hsa:03440 NCBI chr 7:96,481,626...96,709,846
Ensembl chr 7:96,481,626...96,709,880
JBrowse link
G SSBP1 single stranded DNA binding protein 1 IEA KEGG hsa:03440 NCBI chr 7:141,738,321...141,750,488
Ensembl chr 7:141,738,334...141,787,922
JBrowse link
G TOP3A DNA topoisomerase III alpha IEA KEGG hsa:03440 NCBI chr17:18,271,428...18,314,994
Ensembl chr17:18,271,428...18,315,007
JBrowse link
G TOP3B DNA topoisomerase III beta IEA KEGG hsa:03440 NCBI chr22:21,957,025...21,982,787
Ensembl chr22:21,957,025...21,982,813
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 7:152,644,776...152,676,141
Ensembl chr 7:152,644,776...152,676,193
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IEA
TAS
KEGG
RGD
PMID:20690856 hsa:03440, RGD:8662366 NCBI chr14:103,697,617...103,715,451
Ensembl chr14:103,697,609...103,715,504
JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902
JBrowse link
G ACTL6A actin like 6A TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407
JBrowse link
G ACTR5 actin related protein 5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr20:38,748,460...38,772,520
Ensembl chr20:38,748,460...38,772,520
JBrowse link
G ACTR6 actin related protein 6 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:100,200,815...100,224,424
Ensembl chr12:100,199,122...100,241,865
JBrowse link
G ACTR8 actin related protein 8 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:53,858,992...53,882,152
Ensembl chr 3:53,867,066...53,882,152
JBrowse link
G BRD8 bromodomain containing 8 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 5:138,139,770...138,178,630
Ensembl chr 5:138,139,770...138,178,953
JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:44,213,471...44,220,673
Ensembl chr 1:44,213,455...44,220,681
JBrowse link
G EP400 E1A binding protein p400 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:131,949,942...132,080,460
Ensembl chr12:131,949,942...132,080,460
JBrowse link
G EPC1 enhancer of polycomb homolog 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr10:32,267,751...32,378,769
Ensembl chr10:32,267,751...32,378,798
JBrowse link
G EPC2 enhancer of polycomb homolog 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:148,644,751...148,787,569
Ensembl chr 2:148,644,440...148,788,495
JBrowse link
G ING3 inhibitor of growth family member 3 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:120,950,777...120,977,216
Ensembl chr 7:120,950,763...120,977,216
JBrowse link
G INO80 INO80 complex ATPase subunit TAS RGD PMID:21502417 RGD:9495926 NCBI chr15:40,978,880...41,116,280
Ensembl chr15:40,978,880...41,116,280
JBrowse link
G INO80B INO80 complex subunit B TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:74,455,087...74,457,944
Ensembl chr 2:74,455,087...74,457,944
JBrowse link
G INO80C INO80 complex subunit C TAS RGD PMID:21502417 RGD:9495926 NCBI chr18:35,468,333...35,497,960
Ensembl chr18:35,452,230...35,497,979
JBrowse link
G INO80D INO80 complex subunit D TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:205,993,721...206,086,174
Ensembl chr 2:205,993,721...206,086,303
JBrowse link
G INO80E INO80 complex subunit E TAS RGD PMID:21502417 RGD:9495926 NCBI chr16:29,996,241...30,005,791
Ensembl chr16:29,995,715...30,005,793
JBrowse link
G KAT5 lysine acetyltransferase 5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604
JBrowse link
G MCRS1 microspherule protein 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:49,558,299...49,568,142
Ensembl chr12:49,556,544...49,568,145
JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:37,489,993...37,514,766
Ensembl chr 1:37,489,993...37,514,766
JBrowse link
G MORF4L1 mortality factor 4 like 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr15:78,872,890...78,898,139
Ensembl chr15:78,810,487...78,903,078
JBrowse link
G MORF4L2 mortality factor 4 like 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr  X:103,675,498...103,688,047
Ensembl chr  X:103,675,496...103,688,158
JBrowse link
G MRGBP MRG domain binding protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr20:62,796,473...62,801,729
Ensembl chr20:62,796,473...62,801,729
JBrowse link
G NFRKB nuclear factor related to kappaB binding protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr11:129,863,636...129,895,578
Ensembl chr11:129,863,636...129,895,590
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:128,064,785...128,153,914
Ensembl chr 3:128,064,778...128,153,914
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970
JBrowse link
G SRCAP Snf2 related CREBBP activator protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr16:30,699,171...30,741,409
Ensembl chr16:30,698,209...30,741,409
JBrowse link
G TFPT TCF3 fusion partner TAS RGD PMID:21502417 RGD:9495926 NCBI chr19:54,107,020...54,115,657
Ensembl chr19:54,107,020...54,115,657
JBrowse link
G TRRAP transformation/transcription domain associated protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:98,878,532...99,013,241
Ensembl chr 7:98,877,933...99,050,831
JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:193,012,254...193,060,076
Ensembl chr 1:193,012,250...193,060,080
JBrowse link
G VPS72 vacuolar protein sorting 72 homolog TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:151,176,304...151,190,197
Ensembl chr 1:151,176,304...151,195,321
JBrowse link
G YEATS4 YEATS domain containing 4 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:69,359,743...69,427,072
Ensembl chr12:69,359,710...69,390,870
JBrowse link
G YY1 YY1 transcription factor TAS RGD PMID:21502417 RGD:9495926 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788
JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:101,218,165...101,224,190
Ensembl chr 7:101,218,165...101,224,190
JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1A bromodomain adjacent to zinc finger domain 1A TAS RGD PMID:21358755 RGD:9495920 NCBI chr14:34,752,731...34,875,360
Ensembl chr14:34,752,731...34,875,647
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B TAS RGD PMID:21358755 RGD:9495920 NCBI chr 7:73,440,406...73,522,293
Ensembl chr 7:73,440,406...73,522,293
JBrowse link
G BPTF bromodomain PHD finger transcription factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr17:67,825,503...67,984,378
Ensembl chr17:67,825,503...67,984,378
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 8:140,511,322...140,517,154
Ensembl chr 8:140,511,311...140,517,154
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit TAS RGD PMID:21358755 RGD:9495920 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,362
JBrowse link
G SMARCA1 SNF2 related chromatin remodeling ATPase 1 TAS RGD PMID:21358755 RGD:9495920 NCBI chr  X:129,446,506...129,523,490
Ensembl chr  X:129,446,501...129,523,500
JBrowse link
G SMARCA5 SNF2 related chromatin remodeling ATPase 5 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 4:143,513,702...143,557,486
Ensembl chr 4:143,513,702...143,557,486
JBrowse link
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXO1 exonuclease 1 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 1:241,847,986...241,889,939
Ensembl chr 1:241,847,967...241,895,148
JBrowse link
G HMGB1 high mobility group box 1 TAS RGD PMID:18157157 RGD:2306716 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597
JBrowse link
G LIG1 DNA ligase 1 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603
JBrowse link
G MLH1 mutL homolog 1 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896
JBrowse link
G MLH3 mutL homolog 3 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr14:75,013,775...75,051,467
Ensembl chr14:75,013,769...75,051,532
JBrowse link
G MSH2 mutS homolog 2 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 2:47,403,067...47,709,830
Ensembl chr 2:47,403,067...47,663,146
JBrowse link
G MSH3 mutS homolog 3 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 5:80,654,652...80,876,815
Ensembl chr 5:80,654,652...80,876,815
JBrowse link
G MSH6 mutS homolog 6 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 2:47,783,145...47,810,101
Ensembl chr 2:47,695,530...47,810,063
JBrowse link
G PCNA proliferating cell nuclear antigen TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component TAS RGD PMID:18157157 RGD:2306716 NCBI chr 2:189,784,450...189,877,629
Ensembl chr 2:189,784,085...189,877,629
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:5,970,925...6,009,106
Ensembl chr 7:5,970,925...6,009,130
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972
JBrowse link
G RFC1 replication factor C subunit 1 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 4:39,287,456...39,366,362
Ensembl chr 4:39,287,456...39,366,375
JBrowse link
G RFC2 replication factor C subunit 2 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:74,231,502...74,254,399
Ensembl chr 7:74,231,499...74,254,458
JBrowse link
G RFC3 replication factor C subunit 3 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr13:33,818,149...33,977,377
Ensembl chr13:33,818,069...33,966,558
JBrowse link
G RFC4 replication factor C subunit 4 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 3:186,789,900...186,806,482
Ensembl chr 3:186,789,880...186,807,058
JBrowse link
G RFC5 replication factor C subunit 5 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr12:118,016,703...118,041,448
Ensembl chr12:118,013,588...118,033,130
JBrowse link
G RPA1 replication protein A1 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082
JBrowse link
G RPA2 replication protein A2 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746
JBrowse link
G RPA3 replication protein A3 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607
JBrowse link
G RPA4 replication protein A4 TAS
IEA
KEGG
RGD
PMID:18157157 hsa:03430, RGD:2306716 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467
JBrowse link
G SSBP1 single stranded DNA binding protein 1 IEA KEGG hsa:03430 NCBI chr 7:141,738,321...141,750,488
Ensembl chr 7:141,738,334...141,787,922
JBrowse link
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor TAS RGD PMID:20192759 RGD:8662352 NCBI chr 2:68,467,585...68,580,162
Ensembl chr 2:68,467,572...68,655,862
JBrowse link
G APTX aprataxin TAS RGD PMID:20192759 RGD:8662352 NCBI chr 9:32,972,616...33,025,120
Ensembl chr 9:32,886,601...33,025,130
JBrowse link
G DCLRE1C DNA cross-link repair 1C IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:14,897,359...14,954,432
Ensembl chr10:14,897,359...14,954,432
JBrowse link
G DNTT DNA nucleotidylexotransferase IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:96,304,434...96,338,564
Ensembl chr10:96,304,409...96,338,564
JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA KEGG hsa:03450 NCBI chr11:61,792,911...61,797,238
Ensembl chr11:61,792,911...61,797,238
JBrowse link
G LIG4 DNA ligase 4 IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr13:108,207,442...108,218,349
Ensembl chr13:108,207,439...108,218,368
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA KEGG hsa:03450 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885
JBrowse link
G NHEJ1 non-homologous end joining factor 1 IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 2:219,069,357...219,160,815
Ensembl chr 2:219,069,355...219,160,869
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase TAS RGD PMID:20192759 RGD:8662352 NCBI chr19:49,861,204...49,867,576
Ensembl chr19:49,859,882...49,878,351
JBrowse link
G POLL DNA polymerase lambda IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:101,578,882...101,588,270
Ensembl chr10:101,578,882...101,588,270
JBrowse link
G POLM DNA polymerase mu IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 7:44,072,062...44,082,530
Ensembl chr 7:44,072,062...44,082,530
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178
JBrowse link
G RAD50 RAD50 double strand break repair protein IEA KEGG hsa:03450 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IMP RGD PMID:19633668 RGD:401940172 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488
JBrowse link
G RIF1 replication timing regulatory factor 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr 2:151,409,902...151,534,435
Ensembl chr 2:151,409,883...151,508,013
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr15:43,403,061...43,510,640
Ensembl chr15:43,403,061...43,510,728
JBrowse link
G XRCC4 X-ray repair cross complementing 4 IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 5:83,077,547...83,374,473
Ensembl chr 5:83,077,498...83,353,787
JBrowse link
G XRCC5 X-ray repair cross complementing 5 IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 2:216,109,348...216,206,293
Ensembl chr 2:216,107,464...216,206,303
JBrowse link
G XRCC6 X-ray repair cross complementing 6 IEA
TAS
KEGG
RGD
PMID:20192759 hsa:03450, RGD:8662352 NCBI chr22:41,621,295...41,664,041
Ensembl chr22:41,621,163...41,664,048
JBrowse link
nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H IEA KEGG hsa:03420 NCBI chr 5:87,311,471...87,412,930
Ensembl chr 5:87,318,416...87,413,029
JBrowse link
G CDK7 cyclin dependent kinase 7 IEA KEGG hsa:03420 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430
JBrowse link
G CETN2 centrin 2 IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr  X:152,826,994...152,830,757
Ensembl chr  X:152,826,994...152,830,757
JBrowse link
G CUL4A cullin 4A IEA KEGG hsa:03420 NCBI chr13:113,208,193...113,267,108
Ensembl chr13:113,208,193...113,267,108
JBrowse link
G CUL4B cullin 4B IEA KEGG hsa:03420 NCBI chr  X:120,523,858...120,575,532
Ensembl chr  X:120,505,920...120,604,074
JBrowse link
G DDB1 damage specific DNA binding protein 1 IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596
JBrowse link
G DDB2 damage specific DNA binding protein 2 IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:47,214,454...47,239,217
Ensembl chr11:47,214,465...47,239,217
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA
TAS
KEGG
RGD
PMID:19154342 hsa:03420, RGD:7246926 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,334...45,478,828
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:22572993 SMP:00478 hsa:03420, RGD:7246920 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA
TAS
KEGG
RGD
PMID:18166977 PMID:22824526 hsa:03420, RGD:7246923, RGD:7246919 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IEA
TAS
KEGG
RGD
PMID:18166977 PMID:22824526 hsa:03420, RGD:7246923, RGD:7246919 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:18,322,567...18,367,045
Ensembl chr11:18,322,295...18,367,045
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 IEA
TAS
KEGG
RGD
PMID:21763452 hsa:03420, RGD:7246922 NCBI chr 5:71,035,347...71,067,676
Ensembl chr 5:71,035,016...71,067,689
JBrowse link
G GTF2H2C GTF2H2 family member C IEA KEGG hsa:03420 NCBI chr 5:69,560,191...69,595,221
Ensembl chr 5:69,560,191...69,595,221
Ensembl chr 5:69,560,191...69,595,221
JBrowse link
G GTF2H2C_2 GTF2H2 family member C, copy 2 IEA KEGG hsa:03420
G GTF2H3 general transcription factor IIH subunit 3 IEA KEGG hsa:03420 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 IEA KEGG hsa:03420 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 IEA KEGG hsa:03420 NCBI chr 6:158,168,350...158,199,344
Ensembl chr 6:158,168,350...158,199,344
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 TAS RGD PMID:22824526 RGD:7246919 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647
JBrowse link
G LIG1 DNA ligase 1 IEA
EXP
TAS
SMPDB
KEGG
RGD
PMID: PMID:21601536 SMP:00478 hsa:03420, RGD:1358139, RGD:7246935 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603
JBrowse link
G LIG3 DNA ligase 3 TAS RGD PMID:21601536 RGD:7246935 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IEA KEGG hsa:03420 NCBI chr14:60,734,761...60,969,965
Ensembl chr14:60,734,742...60,969,965
JBrowse link
G PCNA proliferating cell nuclear antigen IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:23545418 PMID:17512402 SMP:00478 hsa:03420, RGD:7246932, RGD:7246931 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA
TAS
KEGG
RGD
PMID: PMID:21601536 hsa:03420, RGD:1358139, RGD:7246935 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA
TAS
KEGG
RGD
PMID:21601536 hsa:03420, RGD:7246935 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA
TAS
KEGG
RGD
PMID:21601536 hsa:03420, RGD:7246935 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA
TAS
KEGG
RGD
PMID:21601536 hsa:03420, RGD:7246935 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:21601536 PMID:12806123 SMP:00478 hsa:03420, RGD:7246935, RGD:7246936 NCBI chr12:132,623,762...132,687,342
Ensembl chr12:132,623,753...132,687,376
JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IEA
TAS
KEGG
RGD
PMID:12806123 hsa:03420, RGD:7246936 NCBI chr14:49,643,555...49,688,214
Ensembl chr14:49,643,555...49,688,422
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IEA
TAS
KEGG
RGD
PMID:12806123 hsa:03420, RGD:7246936 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675
JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit IEA
TAS
KEGG
RGD
PMID:12806123 hsa:03420, RGD:7246936 NCBI chr 2:74,958,643...74,970,128
Ensembl chr 2:74,958,643...74,970,128
JBrowse link
G POLK DNA polymerase kappa TAS RGD PMID:21601536 RGD:7246935 NCBI chr 5:75,510,774...75,609,991
Ensembl chr 5:75,511,845...75,609,991
JBrowse link
G POLR1A RNA polymerase I subunit A EXP SMPDB SMP:00478 NCBI chr 2:86,020,216...86,105,886
Ensembl chr 2:86,020,216...86,106,155
JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein IEA
EXP
KEGG
SMPDB
SMP:00478 hsa:03420 NCBI chr19:12,945,862...12,953,642
Ensembl chr19:12,945,855...12,953,642
JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein IEA
TAS
KEGG
RGD
PMID:22572993 hsa:03420, RGD:7246920 NCBI chr 9:107,283,279...107,332,194
Ensembl chr 9:107,283,137...107,332,192
JBrowse link
G RBX1 ring-box 1 IEA KEGG hsa:03420 NCBI chr22:40,951,378...40,973,309
Ensembl chr22:40,951,347...40,973,309
JBrowse link
G RFC1 replication factor C subunit 1 IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:23545418 SMP:00478 hsa:03420, RGD:7246932 NCBI chr 4:39,287,456...39,366,362
Ensembl chr 4:39,287,456...39,366,375
JBrowse link
G RFC2 replication factor C subunit 2 IEA
TAS
KEGG
RGD
PMID:23545418 hsa:03420, RGD:7246932 NCBI chr 7:74,231,502...74,254,399
Ensembl chr 7:74,231,499...74,254,458
JBrowse link
G RFC3 replication factor C subunit 3 IEA
TAS
KEGG
RGD
PMID:23545418 hsa:03420, RGD:7246932 NCBI chr13:33,818,149...33,977,377
Ensembl chr13:33,818,069...33,966,558
JBrowse link
G RFC4 replication factor C subunit 4 IEA
TAS
KEGG
RGD
PMID:23545418 hsa:03420, RGD:7246932 NCBI chr 3:186,789,900...186,806,482
Ensembl chr 3:186,789,880...186,807,058
JBrowse link
G RFC5 replication factor C subunit 5 IEA
TAS
KEGG
RGD
PMID:23545418 hsa:03420, RGD:7246932 NCBI chr12:118,016,703...118,041,448
Ensembl chr12:118,013,588...118,033,130
JBrowse link
G RPA1 replication protein A1 IEA
TAS
KEGG
RGD
PMID:19154342 hsa:03420, RGD:7246926 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082
JBrowse link
G RPA2 replication protein A2 IEA
TAS
KEGG
RGD
PMID:19154342 hsa:03420, RGD:7246926 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746
JBrowse link
G RPA3 replication protein A3 IEA
TAS
KEGG
RGD
PMID:19154342 hsa:03420, RGD:7246926 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607
JBrowse link
G RPA4 replication protein A4 IEA
TAS
KEGG
RGD
PMID:19154342 hsa:03420, RGD:7246926 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467
JBrowse link
G TENT4A terminal nucleotidyltransferase 4A EXP SMPDB SMP:00478 NCBI chr 5:6,713,432...6,757,044
Ensembl chr 5:6,713,432...6,757,044
JBrowse link
G XAB2 XPA binding protein 2 TAS RGD PMID:22824526 RGD:7246919 NCBI chr19:7,619,525...7,629,545
Ensembl chr19:7,619,525...7,629,545
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA
EXP
TAS
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA
TAS
KEGG
RGD
PMID:21763452 PMID:22572993 hsa:03420, RGD:7246922, RGD:7246920 NCBI chr 3:14,145,147...14,178,601
Ensembl chr 3:14,145,145...14,178,621
JBrowse link
G XRCC1 X-ray repair cross complementing 1 TAS RGD PMID:21601536 RGD:7246935 NCBI chr19:43,543,311...43,575,527
Ensembl chr19:43,543,311...43,580,473
JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta TAS RGD PMID:21358755 RGD:9495920 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902
JBrowse link
G ACTL6A actin like 6A TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407
JBrowse link
G ACTL6B actin like 6B TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:100,643,097...100,656,448
Ensembl chr 7:100,643,097...100,656,448
JBrowse link
G ARID1A AT-rich interaction domain 1A TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104
JBrowse link
G ARID1B AT-rich interaction domain 1B TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:156,776,026...157,210,779
Ensembl chr 6:156,776,020...157,210,779
JBrowse link
G ARID2 AT-rich interaction domain 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:45,729,706...45,908,037
Ensembl chr12:45,729,706...45,908,040
JBrowse link
G BRD7 bromodomain containing 7 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr16:50,315,957...50,368,988
Ensembl chr16:50,313,487...50,368,988
JBrowse link
G BRD9 bromodomain containing 9 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 5:863,741...892,801
Ensembl chr 5:850,291...892,801
JBrowse link
G DPF1 double PHD fingers 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:38,211,006...38,229,695
Ensembl chr19:38,211,006...38,229,714
JBrowse link
G DPF2 double PHD fingers 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr11:65,333,852...65,354,262
Ensembl chr11:65,333,843...65,354,262
JBrowse link
G DPF3 double PHD fingers 3 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr14:72,609,034...72,894,101
Ensembl chr14:72,609,034...72,894,101
JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917
JBrowse link
G PHF10 PHD finger protein 10 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:169,703,902...169,724,500
Ensembl chr 6:169,703,902...169,725,566
JBrowse link
G SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 9:2,015,347...2,193,620
Ensembl chr 9:1,980,290...2,193,624
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426
JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009
JBrowse link
G SMARCC1 SWI/SNF related BAF chromatin remodeling complex subunit C1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:47,585,269...47,781,893
Ensembl chr 3:47,585,269...47,782,106
JBrowse link
G SMARCC2 SWI/SNF related BAF chromatin remodeling complex subunit C2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:56,162,359...56,189,483
Ensembl chr12:56,162,359...56,189,567
JBrowse link
G SMARCD1 SWI/SNF related BAF chromatin remodeling complex subunit D1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:50,085,342...50,100,707
Ensembl chr12:50,085,200...50,100,707
JBrowse link
G SMARCD2 SWI/SNF related BAF chromatin remodeling complex subunit D2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr17:63,832,081...63,842,685
Ensembl chr17:63,832,081...63,843,065
JBrowse link
G SMARCD3 SWI/SNF related BAF chromatin remodeling complex subunit D3 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:151,238,780...151,277,149
Ensembl chr 7:151,238,764...151,277,896
JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr17:40,624,962...40,647,818
Ensembl chr17:40,624,962...40,648,654
JBrowse link

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