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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:DNA damage response pathway
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Accession:PW:0001360 term browser browse the term
Definition:The response mechanism/pathways that assure the maintenance of genomic integrity. This involves detection of DNA damage, signaling and amplification of the signal leading to activation of effectors and resulting in repair of damage, cell cycle arrest or, if necessary, cell death. Such response mechanism/pathways may operate collectively with some of their components being shared.
Synonyms:related_synonym: DDR pathway



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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 3:126,489,125...126,498,034
Ensembl chr 3:133,839,643...133,851,450
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714 RGD:4143515 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
JBrowse link
G MSH2 mutS homolog 2 ISO RGD PMID:11900875 RGD:2306714 NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
JBrowse link
G MSH6 mutS homolog 6 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714 RGD:4143515 NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr2B:77,090,215...77,180,724
Ensembl chr2B:195,010,233...195,100,492
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
JBrowse link
altered nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB1 damage specific DNA binding protein 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP RGD PMID:22824526 PMID:24004570 RGD:7246919 RGD:9588971 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO RGD PMID:22824526 RGD:7246919 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr10:44,703,720...44,784,948 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr 3:14,063,499...14,097,023
Ensembl chr 3:14,403,958...14,437,377
JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983
JBrowse link
G ARID1A AT-rich interaction domain 1A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
G ARID1B AT-rich interaction domain 1B ISO RGD PMID:23355908 RGD:8694154 NCBI chr 6:154,581,148...155,018,706 JBrowse link
G PBRM1 polybromo 1 ISO RGD PMID:23355908 RGD:8694154 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:23355908 RGD:8694154 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
ataxia telangiectasia-mutated (ATM) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase ISO RGD PMID:21533982 PMID:23532176 RGD:8661225 RGD:8661232 NCBI chr11:103,109,979...103,256,405
Ensembl chr11:106,584,228...106,727,041
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B ISO RGD PMID:24002223 RGD:8661242 Ensembl chr 7:80,594,626...80,675,709 JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO RGD PMID:24326623 RGD:8661237 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chr  X:144,550,320...144,592,795
Ensembl chr  X:154,389,283...154,428,669
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chr 1:27,230,623...27,349,355
Ensembl chr 1:28,270,116...28,386,878
JBrowse link
G KAT5 lysine acetyltransferase 5 ISO RGD PMID:21533982 PMID:23532176 RGD:8661225 RGD:8661232 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667
JBrowse link
G KDM4A lysine demethylase 4A ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chr 1:42,949,977...43,005,684
Ensembl chr 1:44,325,624...44,380,163
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chr20:39,846,011...39,889,267
Ensembl chr20:40,946,487...40,974,309
JBrowse link
G LOC100994157 histone H2AX ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chr11:113,932,078...113,933,679 JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chr 6:30,444,570...30,462,432
Ensembl chr 6:31,314,560...31,329,243
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:21533982 RGD:8661232 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
JBrowse link
G NBN nibrin ISO RGD PMID:21533982 RGD:8661232 NCBI chr 8:86,622,797...86,674,202
Ensembl chr 8:88,575,198...88,626,307
JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chr11:59,342,820...59,355,386
Ensembl chr11:62,690,542...62,706,542
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chr15:47,006,718...47,141,035
Ensembl chr15:65,276,530...65,410,105
JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chr19:3,030,885...3,062,642
Ensembl chr19:3,982,555...4,015,167
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chr17:54,698,338...54,761,889
Ensembl chr17:59,824,566...59,887,015
JBrowse link
G PPP2CA protein phosphatase 2 catalytic subunit alpha ISO RGD PMID:21533982 PMID:24002223 RGD:8661232 RGD:8661242 NCBI chr 5:129,599,606...129,629,312
Ensembl chr 5:135,751,958...135,765,786
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 Ensembl chr16:30,450,467...30,464,446 JBrowse link
G PPP5C protein phosphatase 5 catalytic subunit ISO RGD PMID:21533982 RGD:8661232 NCBI chr19:43,329,680...43,373,282
Ensembl chr19:51,865,317...51,909,027
JBrowse link
G PPP6C protein phosphatase 6 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 NCBI chr 9:96,267,918...96,311,159
Ensembl chr 9:124,783,173...124,825,877
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 ISO RGD PMID:24002223 RGD:8661242 NCBI chr2B:48,602,395...48,705,229
Ensembl chr2B:165,972,229...166,074,879
JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor ISO RGD PMID:24326623 RGD:8661237 Ensembl chr19:1,331,312...1,352,260 JBrowse link
G RAD50 RAD50 double strand break repair protein ISO RGD PMID:21533982 RGD:8661232 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261
JBrowse link
G RBBP8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chr18:16,181,652...16,274,597
Ensembl chr18:19,811,989...19,903,522
JBrowse link
G RIF1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G RNF168 ring finger protein 168 ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
JBrowse link
G RNF20 ring finger protein 20 ISO RGD PMID:23532176 RGD:8661225 NCBI chr 9:72,738,132...72,767,868
Ensembl chr 9:100,732,342...100,761,258
JBrowse link
G RNF4 ring finger protein 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chr 4:2,614,918...2,661,785
Ensembl chr 4:2,540,612...2,563,937
JBrowse link
G RNF40 ring finger protein 40 ISO RGD PMID:23532176 RGD:8661225 NCBI chr16:24,194,293...24,207,460
Ensembl chr16:31,129,352...31,142,280
JBrowse link
G RNF8 ring finger protein 8 ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 ISO RGD PMID:24002223 RGD:8661242 NCBI chr2B:117,013,343...117,175,296
Ensembl chr2B:235,820,182...235,979,780
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO RGD PMID:21533982 PMID:24326623 RGD:8661232 RGD:8661237 NCBI chr12:90,951,446...90,984,075 JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 ISO RGD PMID:24002223 RGD:8661242 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913
JBrowse link
G USP16 ubiquitin specific peptidase 16 ISO RGD PMID:24002223 RGD:8661242 NCBI chr21:15,455,805...15,487,853
Ensembl chr21:28,843,749...28,876,267
JBrowse link
G USP3 ubiquitin specific peptidase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chr15:42,450,782...42,541,162
Ensembl chr15:60,746,406...60,830,535
JBrowse link
G USP44 ubiquitin specific peptidase 44 ISO RGD PMID:24002223 RGD:8661242 NCBI chr12:93,111,293...93,146,889
Ensembl chr12:96,503,794...96,536,094
JBrowse link
G VCP valosin containing protein ISO RGD PMID:24002223 PMID:24326623 RGD:8661237 RGD:8661242 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588
JBrowse link
base excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase ISO RGD PMID:16221808 RGD:1578408 NCBI chr 3:9,702,311...9,742,283
Ensembl chr 3:9,940,955...9,947,335
JBrowse link
G XRCC1 X-ray repair cross complementing 1 ISO RGD PMID:16221808 RGD:1578408 NCBI chr19:40,485,052...40,522,188
Ensembl chr19:49,094,014...49,125,520
JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD3 chromodomain helicase DNA binding protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr17:7,919,803...7,947,787
Ensembl chr17:7,910,644...7,933,115
JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 ISO RGD PMID:24880148 RGD:9585661 NCBI chr12:6,701,004...6,738,621
Ensembl chr12:6,619,089...6,656,076
JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G GATAD2A GATA zinc finger domain containing 2A ISO RGD PMID:24880148 RGD:9585661 NCBI chr19:18,824,615...18,947,351
Ensembl chr19:19,873,119...19,942,670
JBrowse link
G GATAD2B GATA zinc finger domain containing 2B ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:129,161,151...129,279,702
Ensembl chr 1:132,794,458...132,813,108
JBrowse link
G HDAC1 histone deacetylase 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HDAC2 histone deacetylase 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD3 methyl-CpG binding domain protein 3 ISO RGD PMID:24880148 RGD:9585661 Ensembl chr19:1,549,184...1,559,254 JBrowse link
G MTA1 metastasis associated 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr14:86,058,412...86,111,736 JBrowse link
G MTA2 metastasis associated 1 family member 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr11:57,950,770...57,959,615
Ensembl chr11:61,305,373...61,324,592
JBrowse link
G MTA3 metastasis associated 1 family member 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr2A:42,593,721...42,847,045
Ensembl chr2A:43,513,514...43,694,314
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr  X:9,465,579...9,491,096
Ensembl chr  X:16,834,811...16,859,575
JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXXC1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chr18:43,662,843...43,668,825
Ensembl chr18:47,010,650...47,014,937
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G EBF1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 5:154,091,337...154,492,474
Ensembl chr 5:160,708,235...161,108,568
JBrowse link
G KDM2A lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
JBrowse link
G KDM2B lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246
JBrowse link
G KMT2A lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr11:113,273,198...113,364,404
Ensembl chr11:117,204,820...117,290,100
JBrowse link
G KMT2C lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chr 7:143,714,716...144,016,188
Ensembl chr 7:155,862,610...156,081,043
JBrowse link
G LOC100977775 zinc finger protein 707 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 6:29,476,459...29,485,480
Ensembl chr 6:30,134,263...30,143,045
JBrowse link
G MBD1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:43,647,395...43,662,266
Ensembl chr18:46,996,905...47,009,831
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chr 3:126,489,125...126,498,034
Ensembl chr 3:133,839,643...133,851,450
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G NANOG Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chr12:7,913,037...7,919,715 JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chr  X:60,798,219...60,840,948
Ensembl chr  X:70,852,687...70,894,921
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chr 3:12,215,322...12,361,669
Ensembl chr 3:12,622,397...12,705,060
JBrowse link
G PRDM14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 8:66,578,674...66,599,360
Ensembl chr 8:68,240,741...68,260,263
JBrowse link
G SIN3A SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chr15:54,285,587...54,371,376
Ensembl chr15:73,881,500...73,966,506
JBrowse link
G SPI1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chr11:47,301,245...47,326,891
Ensembl chr11:47,853,991...47,880,259
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943 RGD:8695944 NCBI chr 4:97,612,439...97,745,544
Ensembl chr 4:108,269,082...108,358,400
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943 RGD:8695944 RGD:9479164 NCBI chr2A:74,058,948...74,180,046
Ensembl chr2A:75,568,636...75,682,701
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr19:3,926,583...3,979,163
Ensembl chr19:4,872,753...4,925,330
JBrowse link
G UHRF2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 9:6,228,895...6,322,319
Ensembl chr 9:6,409,081...6,502,484
JBrowse link
G ZBTB33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:109,521,333...109,530,467
Ensembl chr  X:119,712,818...119,714,836
JBrowse link
G ZBTB38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 3:138,401,279...138,481,969 JBrowse link
G ZBTB4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chr17:7,491,971...7,516,823
Ensembl chr17:7,477,848...7,497,062
JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEBP2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chr12:19,440,493...19,522,549
Ensembl chr12:19,825,465...19,907,462
JBrowse link
G APLF aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chr2A:68,509,314...68,629,192
Ensembl chr2A:69,632,459...69,744,611
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ASH1L ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:130,679,868...130,906,918
Ensembl chr 1:134,286,761...134,468,722
JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 8:37,408,151...37,442,080
Ensembl chr 8:34,583,265...34,618,183
JBrowse link
G BAP1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 3:52,344,067...52,352,187
Ensembl chr 3:53,573,785...53,581,943
JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr17:72,292,332...72,303,493
Ensembl chr17:77,842,724...77,854,159
JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:22,477,755...22,487,894
Ensembl chr10:22,857,776...22,863,479
JBrowse link
G BPTF bromodomain PHD finger transcription factor ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr  X:144,550,320...144,592,795
Ensembl chr  X:154,389,283...154,428,669
JBrowse link
G BRD1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr22:29,993,902...30,048,349
Ensembl chr22:48,998,037...49,048,101
JBrowse link
G BRD2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G BRD3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 9:105,151,354...105,189,754
Ensembl chr 9:133,759,111...133,782,419
JBrowse link
G BRD4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600
JBrowse link
G BRD7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chr16:30,576,449...30,630,409
Ensembl chr16:49,463,048...49,514,386
JBrowse link
G BRDT bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chr 1:94,603,937...94,668,852
Ensembl chr 1:93,348,994...93,413,343
JBrowse link
G BRF1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chr14:85,851,908...85,950,489
Ensembl chr14:105,635,757...105,714,465
JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr19:10,424,993...10,476,702
Ensembl chr19:11,144,733...11,195,948
JBrowse link
G CBX2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr17:73,858,381...73,867,811
Ensembl chr17:79,394,550...79,404,545
JBrowse link
G CBX4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr17:73,913,264...73,919,540
Ensembl chr17:79,449,919...79,458,866
JBrowse link
G CBX5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr12:34,463,826...34,521,656
Ensembl chr12:35,218,239...35,236,009
JBrowse link
G CBX6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr22:19,774,136...19,784,937
Ensembl chr22:37,595,940...37,601,679
JBrowse link
G CBX7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr22:20,037,529...20,059,459
Ensembl chr22:37,854,056...37,876,084
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr17:73,874,618...73,877,347
Ensembl chr17:79,410,967...79,413,691
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 5:94,165,414...94,238,836
Ensembl chr 5:99,721,032...99,790,263
JBrowse link
G CREBBP CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959 RGD:9479075 NCBI chr16:2,645,445...2,800,975
Ensembl chr16:3,820,519...3,974,206
JBrowse link
G CXXC1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr18:43,662,843...43,668,825
Ensembl chr18:47,010,650...47,014,937
JBrowse link
G DAXX death domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr19:1,173,915...1,243,633
Ensembl chr19:2,147,031...2,210,039
JBrowse link
G DPF3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chr14:53,189,348...53,475,634
Ensembl chr14:72,061,021...72,340,330
JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr2A:32,044,604...32,060,204
Ensembl chr2A:32,111,566...32,125,242
JBrowse link
G EHMT1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:108,724,568...108,951,077
Ensembl chr 9:137,764,950...137,895,564
JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632 RGD:9479074 NCBI chr 6:31,542,946...31,560,894
Ensembl chr 6:32,429,271...32,451,844
JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:21151613 RGD:9104959 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:140,536,962...140,613,104
Ensembl chr 7:153,017,590...153,059,726
JBrowse link
G HAT1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G HCFC1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr  X:143,502,159...143,526,418
Ensembl chr  X:153,389,859...153,412,999
JBrowse link
G HDAC1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HDAC10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chr22:30,473,753...30,481,369
Ensembl chr22:49,473,369...49,479,216
JBrowse link
G HDAC11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:13,400,788...13,427,010
Ensembl chr 3:13,744,475...13,769,997
JBrowse link
G HDAC2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004
JBrowse link
G HDAC3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:136,981,790...136,997,786
Ensembl chr 5:143,094,406...143,110,322
JBrowse link
G HDAC4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr2B:126,287,745...126,649,815
Ensembl chr2B:245,123,061...245,427,054
JBrowse link
G HDAC5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:13,273,052...13,319,695
Ensembl chr17:13,446,836...13,479,140
JBrowse link
G HDAC6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:41,099,539...41,122,650
Ensembl chr  X:48,960,430...48,982,642
JBrowse link
G HDAC7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:40,913,301...40,950,542
Ensembl chr12:41,789,367...41,825,123
JBrowse link
G HDAC8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:61,565,790...61,811,588
Ensembl chr  X:71,649,341...71,894,896
JBrowse link
G HDAC9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:18,740,580...19,653,615
Ensembl chr 7:18,138,761...18,970,717
JBrowse link
G HJURP Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr2B:121,076,314...121,096,783
Ensembl chr2B:239,950,984...239,967,955
JBrowse link
G ING2 inhibitor of growth family member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 4:175,683,040...175,689,646
Ensembl chr 4:187,909,495...187,915,674
JBrowse link
G JMJD1C jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:59,674,227...60,028,763
Ensembl chr10:61,999,571...62,295,332
JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959 RGD:9479074 NCBI chr17:15,194,414...15,202,818
Ensembl chr17:15,416,075...15,424,197
JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:19,956,067...20,070,637
Ensembl chr 3:20,286,865...20,400,770
JBrowse link
G KAT5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667
JBrowse link
G KAT6A lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chr 8:41,173,833...41,296,547
Ensembl chr 8:38,625,156...38,741,538
JBrowse link
G KAT6B lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:71,354,585...71,561,572
Ensembl chr10:74,035,496...74,223,975
JBrowse link
G KAT7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:43,875,921...43,916,352
Ensembl chr17:48,605,488...48,645,784
JBrowse link
G KAT8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr16:23,837,540...23,851,376
Ensembl chr16:31,486,098...31,500,185
JBrowse link
G KDM1A lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G KDM1B lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 6:18,002,763...18,071,598
Ensembl chr 6:18,355,907...18,425,552
JBrowse link
G KDM2A lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498
JBrowse link
G KDM2B lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246
JBrowse link
G KDM3A lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chr2A:86,497,531...86,548,772 JBrowse link
G KDM3B lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:133,732,400...133,816,988
Ensembl chr 5:139,863,922...139,947,895
JBrowse link
G KDM4A lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632 RGD:9479074 RGD:9479148 NCBI chr 1:42,949,977...43,005,684
Ensembl chr 1:44,325,624...44,380,163
JBrowse link
G KDM4B lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chr19:3,986,296...4,172,359
Ensembl chr19:4,977,413...5,116,113
JBrowse link
G KDM4C lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:6,568,569...6,978,741
Ensembl chr 9:6,746,265...7,155,298
JBrowse link
G KDM4D lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chr11:89,987,537...90,013,421 JBrowse link
G KDM5A lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:342,555...452,161
Ensembl chr12:319,273...423,634
JBrowse link
G KDM5B lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:178,323,073...178,406,608
Ensembl chr 1:182,622,425...182,702,994
JBrowse link
G KDM5C lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:45,377,609...45,440,025
Ensembl chr  X:53,515,886...53,548,785
JBrowse link
G KDM5D lysine demethylase 5D ISO RGD PMID:23200123 RGD:7242632
G KDM6A lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029
JBrowse link
G KDM6B lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:7,878,783...7,889,372
Ensembl chr17:7,866,973...7,874,937
JBrowse link
G KDM7A lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:132,022,983...132,118,881
Ensembl chr 7:144,510,213...144,561,230
JBrowse link
G KDM8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 Ensembl chr16:27,577,230...27,595,164 JBrowse link
G KMT2A lysine methyltransferase 2A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr11:113,273,198...113,364,404
Ensembl chr11:117,204,820...117,290,100
JBrowse link
G KMT2B lysine methyltransferase 2B ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr19:32,647,815...32,668,656
Ensembl chr19:41,382,458...41,402,695
JBrowse link
G KMT2C lysine methyltransferase 2C ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 7:143,714,716...144,016,188
Ensembl chr 7:155,862,610...156,081,043
JBrowse link
G KMT2D lysine methyltransferase 2D ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr12:39,689,463...39,731,904
Ensembl chr12:40,575,083...40,608,661
JBrowse link
G KMT2E lysine methyltransferase 2E (inactive) ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:97,001,250...97,099,956
Ensembl chr 7:109,734,808...109,832,851
JBrowse link
G KMT5A lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:120,982,059...121,007,360 JBrowse link
G KMT5B lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr11:63,239,796...63,297,113
Ensembl chr11:66,549,230...66,581,475
JBrowse link
G KMT5C lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr19:52,381,963...52,390,507
Ensembl chr19:61,073,396...61,078,717
JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr20:39,846,011...39,889,267
Ensembl chr20:40,946,487...40,974,309
JBrowse link
G LBR lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chr 1:200,865,602...200,892,199
Ensembl chr 1:205,870,394...205,893,032
JBrowse link
G LOC100970414 histone H3.3A ISO RGD PMID:24614311 RGD:9075965 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100974647 core histone macro-H2A.2 ISO RGD PMID:24696452 RGD:9074213 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194
JBrowse link
G LOC100974858 core histone macro-H2A.1 ISO RGD PMID:24696452 RGD:9074213 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
G LOC100974973 histone H2A.Z ISO RGD PMID:24696452 RGD:9074213 NCBI chr 4:92,371,150...92,373,454
Ensembl chr 4:103,030,469...103,033,397
JBrowse link
G LOC100977781 protein HIRA ISO RGD PMID:23288364 RGD:9068945 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100988671 histone H3.3A ISO RGD PMID:24614311 RGD:9075965 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100994157 histone H2AX ISO RGD PMID:24614311 RGD:9075965 NCBI chr11:113,932,078...113,933,679 JBrowse link
G MCPH1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 8:624,877...877,839
Ensembl chr 8:6,409,072...6,646,394
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:30,444,570...30,462,432
Ensembl chr 6:31,314,560...31,329,243
JBrowse link
G MEN1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr11:60,159,009...60,166,222
Ensembl chr11:63,499,962...63,507,164
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 1:57,916,267...57,961,812
Ensembl chr 1:59,626,793...59,666,809
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr12:73,549,887...73,589,621
Ensembl chr12:76,402,906...76,441,815
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chr20:31,044,339...31,154,798
Ensembl chr20:32,170,583...32,247,167
JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:172,431,968...172,602,174
Ensembl chr 5:179,499,865...179,666,351
JBrowse link
G NSD3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:37,571,831...37,684,297
Ensembl chr 8:34,754,353...34,860,766
JBrowse link
G ORC1 origin recognition complex subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 1:51,630,344...51,666,327
Ensembl chr 1:53,238,377...53,273,653
JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 ISO RGD PMID:22663077 RGD:9479053 Ensembl chr16:30,186,326...30,190,654 JBrowse link
G PAXIP1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 7:146,546,658...146,605,912
Ensembl chr 7:158,276,798...158,330,911
JBrowse link
G PBRM1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146
JBrowse link
G PCGF1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr2A:74,571,721...74,574,468
Ensembl chr2A:76,077,962...76,080,720
JBrowse link
G PCGF2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr17:18,523,859...18,539,794
Ensembl chr17:18,798,917...18,814,838
JBrowse link
G PCGF3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 4:802,990...874,063
Ensembl chr 4:746,137...805,443
JBrowse link
G PCGF5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:87,908,298...88,029,923
Ensembl chr10:91,492,201...91,549,737
JBrowse link
G PCGF6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:99,901,760...99,949,733 JBrowse link
G PHC1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr12:8,999,018...9,025,900
Ensembl chr12:9,231,394...9,257,806
JBrowse link
G PHC2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 1:32,609,560...32,717,143
Ensembl chr 1:33,794,950...33,846,913
JBrowse link
G PHC3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 3:167,100,797...167,194,987
Ensembl chr 3:175,291,594...175,384,905
JBrowse link
G PHF1 PHD finger protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 6:32,990,080...32,995,785
Ensembl chr 6:34,101,371...34,107,124
JBrowse link
G PHF19 PHD finger protein 19 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr 9:91,982,511...92,030,060
Ensembl chr 9:120,330,111...120,369,459
JBrowse link
G PHF2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G PHF8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
G PRDM16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:1,730,122...2,100,636
Ensembl chr 1:2,981,667...3,234,251
JBrowse link
G PRDM2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:12,838,201...12,963,735
Ensembl chr 1:13,853,895...13,961,610
Ensembl chr 1:13,853,895...13,961,610
JBrowse link
G PRDM6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:118,481,141...118,580,190 JBrowse link
G PRDM8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:43,993,635...44,014,430 JBrowse link
G PRDM9 PR/SET domain 9 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:86,847,131...86,856,802
Ensembl chr 5:92,377,523...92,395,486
JBrowse link
G PRMT1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr19:46,691,795...46,705,179
Ensembl chr19:55,610,938...55,623,135
JBrowse link
G PRMT2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chr21:33,100,101...33,130,060
Ensembl chr21:46,233,951...46,263,570
JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chr14:3,737,741...3,746,646
Ensembl chr14:21,836,984...21,846,018
JBrowse link
G PRMT6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 1:109,582,715...109,586,744
Ensembl chr 1:108,699,098...108,700,225
JBrowse link
G PRMT7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chr16:48,687,324...48,734,883
Ensembl chr16:68,086,620...68,127,953
JBrowse link
G RAG2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr11:36,558,419...36,564,997
Ensembl chr11:36,431,703...36,433,286
JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:180,688,220...180,724,087
Ensembl chr 1:184,974,254...185,010,065
JBrowse link
G RING1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417
JBrowse link
G RNF2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr 1:160,568,438...160,626,783
Ensembl chr 1:164,721,458...164,779,420
JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr16:23,984,260...24,019,579 JBrowse link
G SETD1B SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr12:119,406,881...119,436,037
Ensembl chr12:122,777,996...122,804,181
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:131,869,999...131,921,342
Ensembl chr 4:143,167,190...143,227,732
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 Ensembl chr16:29,030,587...29,068,795 JBrowse link
G SIRT1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SIRT2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799
JBrowse link
G SIRT3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr11:210,052...233,969
Ensembl chr11:255,191...278,732
JBrowse link
G SIRT4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:117,867,453...117,887,968
Ensembl chr12:121,241,112...121,261,777
JBrowse link
G SIRT5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:13,419,242...13,457,200
Ensembl chr 6:13,791,112...13,828,464
JBrowse link
G SIRT6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
G SIRT7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289
JBrowse link
G SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 9:1,818,004...1,997,652
Ensembl chr 9:2,013,237...2,189,409
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
G SMYD1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr2A:87,201,207...87,246,416
Ensembl chr2A:89,108,642...89,155,797
JBrowse link
G SMYD2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:189,849,167...189,905,193
Ensembl chr 1:194,729,116...194,761,045
JBrowse link
G SMYD3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
G SPIN1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chr 9:59,466,550...59,558,773
Ensembl chr 9:87,513,819...87,606,183
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:52,567,420...52,577,324
Ensembl chr 3:160,057,285...160,068,177
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chr14:2,169,169...2,201,911
Ensembl chr14:20,247,325...20,280,074
JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:14,882,491...14,907,724
Ensembl chr10:15,211,360...15,237,097
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323
JBrowse link
G TDRD3 tudor domain containing 3 ISO RGD PMID:23211769 PMID:24035451 RGD:9479148 RGD:9479163 NCBI chr13:41,568,080...41,750,288
Ensembl chr13:60,290,518...60,470,245
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
JBrowse link
G TRIM24 tripartite motif containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:130,420,334...130,547,489
Ensembl chr 7:142,909,009...143,036,526
JBrowse link
G TRIM33 tripartite motif containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chr 1:88,043,031...88,163,804
Ensembl chr 1:123,095,244...123,210,355
JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chr19:3,926,583...3,979,163
Ensembl chr19:4,872,753...4,925,330
JBrowse link
G USP12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:8,334,651...8,463,102
Ensembl chr13:26,707,951...26,758,019
JBrowse link
G USP16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chr21:15,455,805...15,487,853
Ensembl chr21:28,843,749...28,876,267
JBrowse link
G USP21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 1:136,571,967...136,578,196
Ensembl chr 1:140,484,742...140,491,004
JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chr17:30,606,845...30,650,281
Ensembl chr17:35,468,177...35,511,672
JBrowse link
G USP3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr15:42,450,782...42,541,162
Ensembl chr15:60,746,406...60,830,535
JBrowse link
G USP44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chr12:93,111,293...93,146,889
Ensembl chr12:96,503,794...96,536,094
JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053 RGD:9479074 NCBI chr 9:105,241,415...105,265,925
Ensembl chr 9:133,848,185...133,872,889
JBrowse link
G WDR82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:52,196,740...52,220,982
Ensembl chr 3:53,426,112...53,450,170
JBrowse link
G YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chr 8:97,560,251...97,595,117
Ensembl chr 8:99,730,393...99,762,990
JBrowse link
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase ISO RGD PMID:20690856 RGD:8662366 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO RGD PMID:16498454 PMID:24326623 RGD:1578504 RGD:8661237 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G BRCA2 BRCA2 DNA repair associated ISO RGD PMID:20690856 RGD:8662366 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332
JBrowse link
G EXO1 exonuclease 1 ISO RGD PMID:20690856 RGD:8662366 NCBI chr 1:217,410,175...217,451,982
Ensembl chr 1:222,389,684...222,431,556
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:16498454 PMID:20690856 RGD:1578504 RGD:8662366 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966
JBrowse link
G NBN nibrin ISO RGD PMID:20690856 RGD:8662366 NCBI chr 8:86,622,797...86,674,202
Ensembl chr 8:88,575,198...88,626,307
JBrowse link
G RAD50 RAD50 double strand break repair protein ISO RGD PMID:16498454 PMID:20690856 RGD:1578504 RGD:8662366 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261
JBrowse link
G RAD51 RAD51 recombinase ISO RGD PMID:20690856 RGD:8662366 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207
JBrowse link
G RAD51B RAD51 paralog B ISO RGD PMID:20690856 RGD:8662366 NCBI chr14:48,399,345...49,314,577
Ensembl chr14:67,281,148...68,110,693
JBrowse link
G RAD51C RAD51 paralog C ISO RGD PMID:20690856 RGD:8662366 NCBI chr17:52,769,446...52,808,467
Ensembl chr17:57,621,552...57,660,701
JBrowse link
G RAD51D RAD51 paralog D ISO RGD PMID:20690856 RGD:8662366 NCBI chr17:21,666,236...21,693,886
Ensembl chr17:21,958,212...21,978,406
JBrowse link
G RAD54B RAD54 homolog B ISO RGD PMID:20690856 RGD:8662366 NCBI chr 8:90,995,229...91,098,149
Ensembl chr 8:92,939,535...93,034,060
JBrowse link
G RBBP8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chr18:16,181,652...16,274,597
Ensembl chr18:19,811,989...19,903,522
JBrowse link
G XRCC2 X-ray repair cross complementing 2 ISO RGD PMID:20690856 RGD:8662366 NCBI chr 7:144,229,031...144,256,854
Ensembl chr 7:156,378,685...156,406,516
JBrowse link
G XRCC3 X-ray repair cross complementing 3 ISO RGD PMID:20690856 RGD:8662366 NCBI chr14:84,323,644...84,341,763
Ensembl chr14:104,131,903...104,149,037
JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta ISO RGD PMID:21502417 RGD:9495926
G ACTL6A actin like 6A ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983
JBrowse link
G ACTR5 actin related protein 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr20:35,073,297...35,097,955
Ensembl chr20:36,181,343...36,204,996
JBrowse link
G ACTR6 actin related protein 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:97,781,017...97,806,049
Ensembl chr12:101,189,377...101,212,526
JBrowse link
G ACTR8 actin related protein 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:53,802,916...53,820,244
Ensembl chr 3:55,027,468...55,041,182
JBrowse link
G BRD8 bromodomain containing 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:133,535,321...133,557,304
Ensembl chr 5:139,652,112...139,690,468
JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:43,516,839...43,524,206
Ensembl chr 1:44,886,307...44,893,598
JBrowse link
G EPC1 enhancer of polycomb homolog 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr10:32,398,557...32,509,146
Ensembl chr10:32,985,456...33,095,070
JBrowse link
G EPC2 enhancer of polycomb homolog 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr2B:11,074,397...11,218,181
Ensembl chr2B:153,005,176...153,148,644
JBrowse link
G ING3 inhibitor of growth family member 3 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:112,955,848...112,984,473
Ensembl chr 7:125,643,332...125,671,566
JBrowse link
G INO80 INO80 complex ATPase subunit ISO RGD PMID:21502417 RGD:9495926 NCBI chr15:19,920,980...20,058,117
Ensembl chr15:38,170,982...38,307,311
JBrowse link
G INO80B INO80 complex subunit B ISO RGD PMID:21502417 RGD:9495926 NCBI chr2A:74,521,624...74,524,578
Ensembl chr2A:76,027,621...76,030,549
JBrowse link
G INO80C INO80 complex subunit C ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:28,686,112...28,715,946
Ensembl chr18:32,260,924...32,304,152
JBrowse link
G INO80D INO80 complex subunit D ISO RGD PMID:21502417 RGD:9495926 NCBI chr2B:93,233,672...93,325,871
Ensembl chr2B:211,373,993...211,433,124
JBrowse link
G INO80E INO80 complex subunit E ISO RGD PMID:21502417 RGD:9495926 Ensembl chr16:30,369,610...30,379,198 JBrowse link
G KAT5 lysine acetyltransferase 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr11:61,071,118...61,078,667
Ensembl chr11:64,404,572...64,412,667
JBrowse link
G LOC100971447 E1A-binding protein p400 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:129,606,823...129,737,179
Ensembl chr12:134,045,829...134,163,185
JBrowse link
G MCRS1 microspherule protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:39,183,112...39,192,925
Ensembl chr12:40,073,860...40,083,655
JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:36,761,402...36,783,746
Ensembl chr 1:38,111,937...38,133,360
JBrowse link
G MORF4L1 mortality factor 4 like 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr15:57,844,220...57,869,139
Ensembl chr15:76,772,007...76,829,259
JBrowse link
G MORF4L2 mortality factor 4 like 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr  X:92,904,721...92,917,340 JBrowse link
G MRGBP MRG domain binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr20:59,183,842...59,187,982 JBrowse link
G NFRKB nuclear factor related to kappaB binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr11:124,676,456...124,708,349
Ensembl chr11:128,572,240...128,601,779
JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:125,120,524...125,200,859
Ensembl chr 3:132,486,229...132,528,918
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr19:45,995,394...46,017,835
Ensembl chr19:54,739,474...54,761,407
JBrowse link
G SRCAP Snf2 related CREBBP activator protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr16:24,229,869...24,271,427
Ensembl chr16:31,065,964...31,106,312
JBrowse link
G TFPT TCF3 fusion partner ISO RGD PMID:21502417 RGD:9495926 NCBI chr19:51,039,142...51,048,346
Ensembl chr19:59,879,141...59,891,335
JBrowse link
G TRRAP transformation/transcription domain associated protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:90,845,518...90,981,700
Ensembl chr 7:104,351,320...104,486,722
JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:168,471,501...168,519,366
Ensembl chr 1:172,764,606...172,811,880
JBrowse link
G VPS72 vacuolar protein sorting 72 homolog ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:126,525,642...126,539,432
Ensembl chr 1:130,174,051...130,187,785
JBrowse link
G YEATS4 YEATS domain containing 4 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:66,881,733...66,912,966
Ensembl chr12:69,658,150...69,688,824
JBrowse link
G YY1 YY1 transcription factor ISO RGD PMID:21502417 RGD:9495926 NCBI chr14:80,859,491...80,903,651 JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:93,359,038...93,365,521
Ensembl chr 7:106,599,579...106,606,157
JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1A bromodomain adjacent to zinc finger domain 1A ISO RGD PMID:21358755 RGD:9495920 NCBI chr14:15,510,881...15,632,516
Ensembl chr14:33,699,424...33,804,473
JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B ISO RGD PMID:21358755 RGD:9495920 Ensembl chr 7:80,594,626...80,675,709 JBrowse link
G BPTF bromodomain PHD finger transcription factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428
JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 8:137,180,420...137,185,657
Ensembl chr 8:140,267,024...140,270,757
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:21358755 RGD:9495920 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:9,465,579...9,491,096
Ensembl chr  X:16,834,811...16,859,575
JBrowse link
G SMARCA1 SNF2 related chromatin remodeling ATPase 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:118,577,295...118,654,326
Ensembl chr  X:128,875,334...128,952,900
JBrowse link
G SMARCA5 SNF2 related chromatin remodeling ATPase 5 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXO1 exonuclease 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 1:217,410,175...217,451,982
Ensembl chr 1:222,389,684...222,431,556
JBrowse link
G HMGB1 high mobility group box 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527
JBrowse link
G LIG1 DNA ligase 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr19:45,056,737...45,110,867
Ensembl chr19:53,706,778...53,761,088
JBrowse link
G MLH1 mutL homolog 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801
JBrowse link
G MLH3 mutL homolog 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749
JBrowse link
G MSH2 mutS homolog 2 ISO RGD PMID:18157157 RGD:2306716 NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461
JBrowse link
G MSH3 mutS homolog 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 5:34,408,469...34,663,483
Ensembl chr 5:34,719,322...34,938,469
JBrowse link
G MSH6 mutS homolog 6 ISO RGD PMID:18157157 RGD:2306716 NCBI chr2A:47,901,591...47,926,662
Ensembl chr2A:48,824,350...48,849,779
JBrowse link
G PCNA proliferating cell nuclear antigen ISO RGD PMID:18157157 RGD:2306716 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chr2B:77,090,215...77,180,724
Ensembl chr2B:195,010,233...195,100,492
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chr 7:44,829,040...44,837,928
Ensembl chr 7:44,896,320...44,905,393
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chr11:69,665,642...69,715,879
Ensembl chr11:72,969,844...73,018,295
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit ISO RGD PMID:18157157 RGD:2306716 NCBI chr11:62,709,988...62,712,038
Ensembl chr11:66,022,395...66,024,442
JBrowse link
G RFC1 replication factor C subunit 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 4:33,618,590...33,695,999
Ensembl chr 4:39,471,719...39,548,548
JBrowse link
G RFC2 replication factor C subunit 2 ISO RGD PMID:18157157 RGD:2306716 Ensembl chr 7:81,378,937...81,401,937 JBrowse link
G RFC3 replication factor C subunit 3 ISO RGD PMID:18157157 RGD:2306716 NCBI chr13:15,073,464...15,220,646
Ensembl chr13:33,503,439...33,523,403
JBrowse link
G RFC4 replication factor C subunit 4 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 3:183,824,865...183,841,895
Ensembl chr 3:192,290,639...192,307,839
JBrowse link
G RFC5 replication factor C subunit 5 ISO RGD PMID:18157157 RGD:2306716 NCBI chr12:115,595,398...115,611,442
Ensembl chr12:118,973,560...118,990,308
JBrowse link
G RPA1 replication protein A1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596
JBrowse link
G RPA2 replication protein A2 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666
JBrowse link
G RPA3 replication protein A3 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 7:8,361,623...8,365,098
Ensembl chr 7:7,713,629...7,717,169
JBrowse link
G RPA4 replication protein A4 ISO RGD PMID:18157157 RGD:2306716 NCBI chr  X:86,114,330...86,116,687 JBrowse link
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor ISO RGD PMID:20192759 RGD:8662352 NCBI chr2A:68,509,314...68,629,192
Ensembl chr2A:69,632,459...69,744,611
JBrowse link
G APTX aprataxin ISO RGD PMID:20192759 RGD:8662352 NCBI chr 9:32,747,409...32,819,270
Ensembl chr 9:33,556,419...33,585,060
JBrowse link
G DCLRE1C DNA cross-link repair 1C ISO RGD PMID:20192759 RGD:8662352 NCBI chr10:14,901,335...14,956,947
Ensembl chr10:15,236,558...15,269,043
JBrowse link
G DNTT DNA nucleotidylexotransferase ISO RGD PMID:20192759 RGD:8662352 NCBI chr10:92,916,783...92,958,216
Ensembl chr10:96,423,819...96,457,742
JBrowse link
G LIG4 DNA ligase 4 ISO RGD PMID:20192759 RGD:8662352 NCBI chr13:89,336,434...89,347,418
Ensembl chr13:108,475,820...108,478,555
JBrowse link
G NHEJ1 non-homologous end joining factor 1 ISO RGD PMID:20192759 RGD:8662352 NCBI chr2B:106,326,596...106,419,928
Ensembl chr2B:224,926,183...225,008,788
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase ISO RGD PMID:20192759 RGD:8662352 NCBI chr19:46,874,216...46,880,954
Ensembl chr19:55,790,048...55,796,762
JBrowse link
G POLL DNA polymerase lambda ISO RGD PMID:20192759 RGD:8662352 NCBI chr10:98,181,049...98,190,463
Ensembl chr10:101,653,978...101,663,360
JBrowse link
G POLM DNA polymerase mu ISO RGD PMID:20192759 RGD:8662352 NCBI chr 7:44,785,797...44,796,624
Ensembl chr 7:44,852,594...44,862,816
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit ISO RGD PMID:20192759 RGD:8662352 NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
JBrowse link
G RBBP8 RB binding protein 8, endonuclease ISO RGD PMID:19633668 RGD:401940172 NCBI chr18:16,181,652...16,274,597
Ensembl chr18:19,811,989...19,903,522
JBrowse link
G RIF1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
JBrowse link
G XRCC4 X-ray repair cross complementing 4 ISO RGD PMID:20192759 RGD:8662352 NCBI chr 5:31,927,463...32,202,394
Ensembl chr 5:32,246,320...32,521,490
JBrowse link
G XRCC5 X-ray repair cross complementing 5 ISO RGD PMID:20192759 RGD:8662352 NCBI chr2B:103,371,459...103,468,419
Ensembl chr2B:221,972,742...222,071,235
JBrowse link
G XRCC6 X-ray repair cross complementing 6 ISO RGD PMID:20192759 RGD:8662352 NCBI chr22:22,516,281...22,557,379
Ensembl chr22:40,603,038...40,643,314
JBrowse link
nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CETN2 centrin 2 ISO RGD PMID:22572993 RGD:7246920 NCBI chr  X:142,401,679...142,405,206
Ensembl chr  X:152,320,893...152,324,362
JBrowse link
G DDB1 damage specific DNA binding protein 1 ISO RGD PMID:22572993 RGD:7246920 NCBI chr11:56,599,422...56,633,140
Ensembl chr11:59,964,235...59,997,805
JBrowse link
G DDB2 damage specific DNA binding protein 2 ISO RGD PMID:22572993 RGD:7246920 NCBI chr11:47,161,345...47,185,526
Ensembl chr11:47,714,723...47,738,761
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO RGD PMID:19154342 RGD:7246926 NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO SMPDB
RGD
PMID:22572993 RGD:7246920 SMP:00478 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:22572993 RGD:7246920 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO RGD PMID:18166977 PMID:22824526 RGD:7246919 RGD:7246923 NCBI chr10:44,703,720...44,784,948 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO RGD PMID:18166977 PMID:22824526 RGD:7246919 RGD:7246923 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 ISO RGD PMID:22572993 RGD:7246920 NCBI chr11:18,357,594...18,402,268
Ensembl chr11:18,042,824...18,086,898
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chr21:25,695,582...25,702,689 JBrowse link
G LIG1 DNA ligase 1 ISO SMPDB
RGD
PMID:21601536 RGD:7246935 SMP:00478 NCBI chr19:45,056,737...45,110,867
Ensembl chr19:53,706,778...53,761,088
JBrowse link
G LIG3 DNA ligase 3 ISO RGD PMID:21601536 RGD:7246935 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220
JBrowse link
G PCNA proliferating cell nuclear antigen ISO SMPDB
RGD
PMID:17512402 PMID:23545418 RGD:7246931 RGD:7246932 SMP:00478 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chr19:47,347,919...47,381,772
Ensembl chr19:56,251,356...56,297,611
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chr 7:44,829,040...44,837,928
Ensembl chr 7:44,896,320...44,905,393
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chr11:69,665,642...69,715,879
Ensembl chr11:72,969,844...73,018,295
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit ISO RGD PMID:21601536 RGD:7246935 NCBI chr11:62,709,988...62,712,038
Ensembl chr11:66,022,395...66,024,442
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit ISO SMPDB
RGD
PMID:12806123 PMID:21601536 RGD:7246935 RGD:7246936 SMP:00478 NCBI chr12:129,975,750...130,038,402
Ensembl chr12:134,695,976...134,758,650
JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chr14:30,222,957...30,268,455
Ensembl chr14:48,531,945...48,576,700
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951
JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit ISO RGD PMID:12806123 RGD:7246936 NCBI chr2A:75,023,087...75,034,178
Ensembl chr2A:76,526,385...76,537,463
JBrowse link
G POLK DNA polymerase kappa ISO RGD PMID:21601536 RGD:7246935 NCBI chr 5:39,700,659...39,788,727
Ensembl chr 5:40,311,526...40,401,003
JBrowse link
G POLR1A RNA polymerase I subunit A ISO SMPDB SMP:00478 NCBI chr2A:86,070,160...86,157,606
Ensembl chr2A:87,622,466...87,705,357
JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein ISO SMPDB SMP:00478 NCBI chr19:12,508,232...12,516,068
Ensembl chr19:13,250,718...13,258,482
JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein ISO RGD PMID:22572993 RGD:7246920 NCBI chr 9:78,433,461...78,482,157
Ensembl chr 9:106,622,377...106,670,317
JBrowse link
G RFC1 replication factor C subunit 1 ISO SMPDB
RGD
PMID:23545418 RGD:7246932 SMP:00478 NCBI chr 4:33,618,590...33,695,999
Ensembl chr 4:39,471,719...39,548,548
JBrowse link
G RFC2 replication factor C subunit 2 ISO RGD PMID:23545418 RGD:7246932 Ensembl chr 7:81,378,937...81,401,937 JBrowse link
G RFC3 replication factor C subunit 3 ISO RGD PMID:23545418 RGD:7246932 NCBI chr13:15,073,464...15,220,646
Ensembl chr13:33,503,439...33,523,403
JBrowse link
G RFC4 replication factor C subunit 4 ISO RGD PMID:23545418 RGD:7246932 NCBI chr 3:183,824,865...183,841,895
Ensembl chr 3:192,290,639...192,307,839
JBrowse link
G RFC5 replication factor C subunit 5 ISO RGD PMID:23545418 RGD:7246932 NCBI chr12:115,595,398...115,611,442
Ensembl chr12:118,973,560...118,990,308
JBrowse link
G RPA1 replication protein A1 ISO RGD PMID:19154342 RGD:7246926 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596
JBrowse link
G RPA2 replication protein A2 ISO RGD PMID:19154342 RGD:7246926 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666
JBrowse link
G RPA3 replication protein A3 ISO RGD PMID:19154342 RGD:7246926 NCBI chr 7:8,361,623...8,365,098
Ensembl chr 7:7,713,629...7,717,169
JBrowse link
G RPA4 replication protein A4 ISO RGD PMID:19154342 RGD:7246926 NCBI chr  X:86,114,330...86,116,687 JBrowse link
G TENT4A terminal nucleotidyltransferase 4A ISO SMPDB SMP:00478 NCBI chr 5:7,032,809...7,077,080
Ensembl chr 5:6,724,029...6,752,159
JBrowse link
G XAB2 XPA binding protein 2 ISO RGD PMID:22824526 RGD:7246919 NCBI chr19:6,909,281...6,919,332
Ensembl chr19:7,764,264...7,774,305
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO SMPDB
RGD
PMID:19154342 RGD:7246926 SMP:00478 NCBI chr 9:68,726,723...68,788,049
Ensembl chr 9:96,886,795...96,909,254
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor ISO RGD PMID:21763452 PMID:22572993 RGD:7246920 RGD:7246922 NCBI chr 3:14,063,499...14,097,023
Ensembl chr 3:14,403,958...14,437,377
JBrowse link
G XRCC1 X-ray repair cross complementing 1 ISO RGD PMID:21601536 RGD:7246935 NCBI chr19:40,485,052...40,522,188
Ensembl chr19:49,094,014...49,125,520
JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta ISO RGD PMID:21358755 RGD:9495920
G ACTL6A actin like 6A ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983
JBrowse link
G ACTL6B actin like 6B ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 7:92,670,166...92,683,571
Ensembl chr 7:106,070,839...106,083,646
JBrowse link
G ARID1A AT-rich interaction domain 1A ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
G ARID1B AT-rich interaction domain 1B ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 6:154,581,148...155,018,706 JBrowse link
G ARID2 AT-rich interaction domain 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr12:42,823,236...43,004,465
Ensembl chr12:43,692,914...43,871,564
JBrowse link
G BRD7 bromodomain containing 7 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr16:30,576,449...30,630,409
Ensembl chr16:49,463,048...49,514,386
JBrowse link
G BRD9 bromodomain containing 9 ISO RGD PMID:21358755 RGD:9495920
G DPF1 double PHD fingers 1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr19:35,301,009...35,320,126
Ensembl chr19:43,875,879...43,889,021
JBrowse link
G DPF2 double PHD fingers 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr11:60,698,580...60,717,800
Ensembl chr11:64,037,108...64,055,727
JBrowse link
G DPF3 double PHD fingers 3 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr14:53,189,348...53,475,634
Ensembl chr14:72,061,021...72,340,330
JBrowse link
G PBRM1 polybromo 1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 3:52,487,083...52,626,418
Ensembl chr 3:53,718,051...53,850,146
JBrowse link
G PHF10 PHD finger protein 10 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 6:167,776,108...167,796,711
Ensembl chr 6:172,608,894...172,831,584
JBrowse link
G SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 9:1,818,004...1,997,652
Ensembl chr 9:2,013,237...2,189,409
JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921
JBrowse link
G SMARCC1 SWI/SNF related BAF chromatin remodeling complex subunit C1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248
JBrowse link
G SMARCC2 SWI/SNF related BAF chromatin remodeling complex subunit C2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr12:32,726,150...32,753,366
Ensembl chr12:32,977,879...33,004,144
JBrowse link
G SMARCD1 SWI/SNF related BAF chromatin remodeling complex subunit D1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804
JBrowse link
G SMARCD2 SWI/SNF related BAF chromatin remodeling complex subunit D2 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr17:57,911,612...57,922,461
Ensembl chr17:63,055,968...63,068,861
JBrowse link
G SMARCD3 SWI/SNF related BAF chromatin remodeling complex subunit D3 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681
JBrowse link
G SMARCE1 SWI/SNF related BAF chromatin remodeling complex subunit E1 ISO RGD PMID:21358755 PMID:23355908 RGD:8694154 RGD:9495920 NCBI chr17:16,633,982...16,660,502
Ensembl chr17:16,860,400...16,884,946
JBrowse link

Term paths to the root