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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:histone modification pathway
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Accession:PW:0001338 term browser browse the term
Definition:The tails of histone proteins are subject to a wide array of modifications of which methylation and acetylation have been more thoroughly documented. The modified residues are recognized by particular proteins or readers, in turn acting upon their targets. The modifications are rendered reversible by the enzymes that carry out the reaction in the opposite direction, also referred to as erasers.
Synonyms:related_synonym: histone modification
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histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chrNW_004624752:18,954,095...19,023,656
Ensembl chrNW_004624752:18,956,481...19,023,620 		JBrowse link
G Aplf aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624762:4,727,834...4,847,779
Ensembl chrNW_004624762:4,724,813...4,847,416 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624798:11,306,849...11,317,075 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624901:1,342,855...1,354,196
Ensembl chrNW_004624901:1,342,765...1,354,165 		JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624885:961,880...1,136,990
Ensembl chrNW_004624885:961,880...1,136,731 		JBrowse link
G Ash2l ASH2 like, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624780:5,502,708...5,531,541
Ensembl chrNW_004624780:5,502,512...5,531,446 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624822:4,809,489...4,818,514
Ensembl chrNW_004624822:4,809,405...4,818,515 		JBrowse link
G Birc5 baculoviral IAP repeat containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624801:7,727,084...7,735,946
Ensembl chrNW_004624801:7,727,093...7,735,940 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984 		JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004624870:489,359...626,677
Ensembl chrNW_004624870:487,955...626,683 		JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624963:142,987...212,190
Ensembl chrNW_004624963:145,580...212,064 		JBrowse link
G Brd1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624752:811,457...853,702
Ensembl chrNW_004624752:811,451...854,039 		JBrowse link
G Brd2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624754:23,742,506...23,750,668
Ensembl chrNW_004624754:23,742,509...23,750,062 		JBrowse link
G Brd3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624760:2,220,019...2,247,322
Ensembl chrNW_004624760:2,221,472...2,247,388 		JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624901:2,348,218...2,434,429
Ensembl chrNW_004624901:2,346,734...2,380,852 		JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624757:6,294,559...6,335,401
Ensembl chrNW_004624757:6,294,415...6,335,285 		JBrowse link
G Brdt bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624742:5,730,805...5,798,731
Ensembl chrNW_004624742:5,727,939...5,798,809 		JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624734:213,536...280,816
Ensembl chrNW_004624734:213,895...279,777 		JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624828:2,833,011...2,872,281
Ensembl chrNW_004624828:2,832,769...2,871,167 		JBrowse link
G Cbx2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624801:8,951,659...8,961,280
Ensembl chrNW_004624801:8,951,723...8,958,352 		JBrowse link
G Cbx4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624801:9,002,290...9,008,305
Ensembl chrNW_004624801:9,003,059...9,008,203 		JBrowse link
G Cbx5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624904:2,273,054...2,313,723
Ensembl chrNW_004624904:2,276,036...2,296,706 		JBrowse link
G Cbx6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624752:9,291,955...9,302,451
Ensembl chrNW_004624752:9,291,892...9,302,688 		JBrowse link
G Cbx7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624752:9,133,587...9,151,216
Ensembl chrNW_004624752:9,133,569...9,151,934 		JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624801:8,966,366...8,969,458
Ensembl chrNW_004624801:8,967,013...8,969,697 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624828:5,266,676...5,302,061
Ensembl chrNW_004624828:5,266,932...5,302,067 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624745:27,094,302...27,117,957
Ensembl chrNW_004624745:27,095,361...27,117,669 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624743:17,311,167...17,380,458 JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959 RGD:9479075 NCBI chrNW_004624824:1,516,481...1,655,364
Ensembl chrNW_004624824:1,517,966...1,655,329 		JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624778:13,908,430...13,915,273
Ensembl chrNW_004624778:13,908,221...13,914,359 		JBrowse link
G Daxx death domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624754:23,504,465...23,509,034
Ensembl chrNW_004624754:23,505,386...23,509,241 		JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624828:6,648,403...6,697,617
Ensembl chrNW_004624828:6,650,762...6,697,879 		JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624734:28,518,435...28,779,658
Ensembl chrNW_004624734:28,518,470...28,769,840 		JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624738:13,694,135...13,706,465
Ensembl chrNW_004624738:13,694,135...13,706,364 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624760:271,397...463,462
Ensembl chrNW_004624760:272,493...379,780 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632 RGD:9479074 NCBI chrNW_004624754:24,354,271...24,368,319
Ensembl chrNW_004624754:24,354,284...24,368,638 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624800:6,781,848...6,874,221
Ensembl chrNW_004624800:6,802,901...6,874,196 		JBrowse link
G Hat1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624787:9,343,124...9,402,630
Ensembl chrNW_004624787:9,346,741...9,403,700 		JBrowse link
G Hcfc1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624946:571,776...591,543
Ensembl chrNW_004624946:571,774...590,247 		JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624764:15,510,655...15,552,020
Ensembl chrNW_004624764:15,510,866...15,552,025 		JBrowse link
G Hdac10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624752:518,563...524,497 JBrowse link
G Hdac11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624796:12,666,544...12,683,223
Ensembl chrNW_004624796:12,666,403...12,683,003 		JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592 		JBrowse link
G Hdac3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624774:845,970...864,080
Ensembl chrNW_004624774:845,358...863,809 		JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624847:3,846,196...4,101,537
Ensembl chrNW_004624847:3,845,858...4,101,487 		JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624795:814,134...838,031
Ensembl chrNW_004624795:818,154...837,961 		JBrowse link
G Hdac6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Hdac7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624816:4,441,543...4,476,520
Ensembl chrNW_004624816:4,441,849...4,475,437 		JBrowse link
G Hdac8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624903:2,620,571...2,852,247
Ensembl chrNW_004624903:2,620,501...2,852,822 		JBrowse link
G Hdac9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624739:11,431,463...12,162,073
Ensembl chrNW_004624739:11,431,888...11,941,809 		JBrowse link
G Hjurp Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624847:166,511...179,881 JBrowse link
G Ing2 inhibitor of growth family member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624769:14,257,369...14,263,912
Ensembl chrNW_004624769:14,257,403...14,264,391 		JBrowse link
G Jmjd1c jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624791:306,827...589,134
Ensembl chrNW_004624791:365,726...588,870 		JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959 RGD:9479074 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951 		JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624821:5,387,212...5,489,013 JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624767:20,668,759...20,675,367
Ensembl chrNW_004624767:20,666,763...20,675,164 		JBrowse link
G Kat6a lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624780:1,237,326...1,378,718
Ensembl chrNW_004624780:1,240,292...1,376,072 		JBrowse link
G Kat6b lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624754:8,204,266...8,391,328
Ensembl chrNW_004624754:8,204,943...8,392,724 		JBrowse link
G Kat7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624795:5,859,974...5,892,519
Ensembl chrNW_004624795:5,859,443...5,892,527 		JBrowse link
G Kat8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624782:14,157,905...14,169,231
Ensembl chrNW_004624782:14,157,823...14,169,231 		JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624764:7,664,550...7,742,494 JBrowse link
G Kdm1b lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624756:8,447,780...8,506,870
Ensembl chrNW_004624756:8,449,585...8,506,858 		JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793 		JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
G Kdm3a lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624749:16,784,538...16,829,784
Ensembl chrNW_004624749:16,784,538...16,829,365 		JBrowse link
G Kdm3b lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624743:31,148,051...31,224,896
Ensembl chrNW_004624743:31,148,098...31,225,992 		JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632 RGD:9479074 RGD:9479148 NCBI chrNW_004624892:2,933,066...2,982,207
Ensembl chrNW_004624892:2,933,172...2,984,195 		JBrowse link
G Kdm4b lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624828:4,796,306...4,893,093
Ensembl chrNW_004624828:4,796,972...4,864,638 		JBrowse link
G Kdm4c lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624736:11,254,125...11,711,498
Ensembl chrNW_004624736:11,382,598...11,711,536 		JBrowse link
G Kdm4d lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624735:39,640,090...39,695,833 JBrowse link
G Kdm5a lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624735:8,473,778...8,631,964
Ensembl chrNW_004624735:8,530,016...8,631,954
Ensembl chrNW_004624735:8,530,016...8,631,954 		JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624807:8,011,731...8,091,352
Ensembl chrNW_004624807:8,011,878...8,093,758 		JBrowse link
G Kdm5c lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624909:421,033...455,201
Ensembl chrNW_004624909:420,077...455,309 		JBrowse link
G Kdm6a lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186 		JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624786:10,413,670...10,435,118
Ensembl chrNW_004624786:10,425,816...10,433,806 		JBrowse link
G Kdm7a lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624765:20,370,492...20,448,969
Ensembl chrNW_004624765:20,376,684...20,449,026 		JBrowse link
G Kdm8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624782:11,884,847...11,903,944
Ensembl chrNW_004624782:11,884,631...11,903,947 		JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624784:13,824,507...13,912,672
Ensembl chrNW_004624784:13,824,541...13,908,077 		JBrowse link
G Kmt2b lysine methyltransferase 2B ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624794:10,023,229...10,046,128
Ensembl chrNW_004624794:10,023,492...10,045,820 		JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624800:4,510,669...4,785,909
Ensembl chrNW_004624800:4,511,549...4,784,053 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624816:3,129,127...3,169,143
Ensembl chrNW_004624816:3,133,659...3,166,346 		JBrowse link
G Kmt2e lysine methyltransferase 2E (inactive) ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624739:24,371,415...24,476,245
Ensembl chrNW_004624739:24,372,237...24,476,137 		JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624747:23,289,118...23,309,465
Ensembl chrNW_004624747:23,289,119...23,308,682 		JBrowse link
G Kmt5b lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624767:18,654,682...18,716,087
Ensembl chrNW_004624767:18,655,193...18,716,252 		JBrowse link
G Kmt5c lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624832:1,945,194...1,951,016
Ensembl chrNW_004624832:1,945,193...1,951,247 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624790:10,762,340...10,799,228
Ensembl chrNW_004624790:10,761,632...10,791,891 		JBrowse link
G Lbr lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chrNW_004624835:6,469,677...6,489,790 JBrowse link
G LOC101698172 histone H3.3 ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004624801:5,668,661...5,672,164 JBrowse link
G LOC101699418 histone H3.3 ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004624807:194,372...203,205 JBrowse link
G LOC101701243 histone H2A.Z ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004624830:7,238,897...7,240,566
Ensembl chrNW_004624830:7,238,929...7,240,563 		JBrowse link
G LOC101701891 histone H2AX ISO RGD PMID:24614311 RGD:9075965 NCBI chrNW_004624784:14,475,813...14,477,269
Ensembl chrNW_004624784:14,476,730...14,477,161 		JBrowse link
G LOC101706296 core histone macro-H2A.1 ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101712013 core histone macro-H2A.2 ISO RGD PMID:24696452 RGD:9074213 NCBI chrNW_004624754:4,227,897...4,276,595
Ensembl chrNW_004624754:4,227,644...4,279,077 		JBrowse link
G LOC101713307 protein HIRA ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624747:9...95,643 JBrowse link
G Mcph1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624861:4,373,743...4,556,933 JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624754:25,007,866...25,020,950 JBrowse link
G Men1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624767:21,579,084...21,585,380
Ensembl chrNW_004624767:21,579,103...21,585,373 		JBrowse link
G Mysm1 Myb like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624862:1,615,494...1,666,440
Ensembl chrNW_004624862:1,615,558...1,666,148 		JBrowse link
G Nap1l1 nucleosome assembly protein 1 like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624750:21,966,021...22,005,480 JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624842:4,570,758...4,665,517 JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624733:12,781,693...12,929,861
Ensembl chrNW_004624733:12,786,347...12,927,980 		JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624780:5,241,556...5,367,815
Ensembl chrNW_004624780:5,241,537...5,363,325 		JBrowse link
G Orc1 origin recognition complex subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624859:833,360...863,631
Ensembl chrNW_004624859:833,793...863,539 		JBrowse link
G Pagr1 PAXIP1 associated glutamate rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624782:13,387,155...13,390,153
Ensembl chrNW_004624782:13,387,376...13,389,740 		JBrowse link
G Paxip1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624800:2,653,381...2,709,261
Ensembl chrNW_004624800:2,653,732...2,707,161 		JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624822:4,529,350...4,666,714
Ensembl chrNW_004624822:4,529,007...4,663,165 		JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624749:28,999,506...29,007,744
Ensembl chrNW_004624749:29,004,390...29,010,393 		JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624795:3,942,868...3,952,325
Ensembl chrNW_004624795:3,947,885...3,951,122 		JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624755:26,294,675...26,344,864
Ensembl chrNW_004624755:26,294,689...26,326,318 		JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624737:2,423,269...2,545,006
Ensembl chrNW_004624737:2,489,788...2,540,488 		JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624831:2,549,951...2,587,885 JBrowse link
G Phc1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624860:4,720,722...4,747,456 JBrowse link
G Phc2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624764:16,353,193...16,456,115
Ensembl chrNW_004624764:16,351,954...16,456,119 		JBrowse link
G Phc3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624730:48,144,767...48,258,807
Ensembl chrNW_004624730:48,153,414...48,238,279 		JBrowse link
G Phf1 PHD finger protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004624754:23,400,338...23,405,370
Ensembl chrNW_004624754:23,400,664...23,404,212 		JBrowse link
G Phf19 PHD finger protein 19 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004624760:14,468,418...14,486,942
Ensembl chrNW_004624760:14,468,461...14,487,091 		JBrowse link
G Phf2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624868:2,890,730...2,992,788
Ensembl chrNW_004624868:2,890,612...2,975,988 		JBrowse link
G Phf8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624909:1,481,710...1,639,840 JBrowse link
G Prdm16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624818:6,978,436...7,258,366
Ensembl chrNW_004624818:6,978,436...7,258,357 		JBrowse link
G Prdm2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624764:261,451...384,270
Ensembl chrNW_004624764:276,893...384,270 		JBrowse link
G Prdm6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624774:18,833,848...18,941,898
Ensembl chrNW_004624774:18,840,122...18,941,543 		JBrowse link
G Prdm8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624757:10,801,701...10,809,887
Ensembl chrNW_004624757:10,802,406...10,805,704 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624832:4,593,594...4,602,514
Ensembl chrNW_004624832:4,589,743...4,602,402 		JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624745:31,680,149...31,701,322
Ensembl chrNW_004624745:31,689,868...31,709,018 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624820:9,599,867...9,608,578
Ensembl chrNW_004624820:9,599,734...9,608,703 		JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624772:3,071,601...3,075,866
Ensembl chrNW_004624772:3,071,844...3,075,601 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chrNW_004624746:17,949,443...18,017,344
Ensembl chrNW_004624746:17,948,085...18,001,259 		JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624767:10,678,547...10,680,130
Ensembl chrNW_004624767:10,678,359...10,680,132 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624807:6,011,861...6,046,927
Ensembl chrNW_004624807:6,011,289...6,046,923 		JBrowse link
G Ring1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624754:23,595,612...23,599,146
Ensembl chrNW_004624754:23,594,910...23,599,434 		JBrowse link
G Rnf2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chrNW_004624814:8,470,818...8,516,252 JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624782:14,030,425...14,053,679 JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chrNW_004624747:22,184,371...22,206,692
Ensembl chrNW_004624747:22,184,443...22,204,395 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200 		JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624777:19,764,383...19,812,804
Ensembl chrNW_004624777:19,768,698...19,814,506 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624772:18,855,405...18,894,285
Ensembl chrNW_004624772:18,855,332...18,894,226 		JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004624782:13,054,643...13,076,640
Ensembl chrNW_004624782:13,054,343...13,072,515 		JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946 		JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276 		JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624766:22,199,741...22,233,933
Ensembl chrNW_004624766:22,199,601...22,233,933 		JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624747:13,329,662...13,352,151
Ensembl chrNW_004624747:13,335,442...13,352,201 		JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624756:12,678,866...12,705,862
Ensembl chrNW_004624756:12,678,877...12,706,604 		JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520 		JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chrNW_004624801:10,753,480...10,760,601
Ensembl chrNW_004624801:10,753,333...10,764,122 		JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624736:6,681,491...6,863,403
Ensembl chrNW_004624736:6,695,658...6,865,809 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smyd1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624749:16,400,037...16,432,956
Ensembl chrNW_004624749:16,399,346...16,432,887 		JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624771:19,441,452...19,485,897
Ensembl chrNW_004624771:19,441,456...19,487,793 		JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624771:13,149,547...13,943,352
Ensembl chrNW_004624771:13,149,649...13,943,137 		JBrowse link
G Spin1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chrNW_004624765:24,223,499...24,271,049
Ensembl chrNW_004624765:24,222,380...24,271,046 		JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624864:3,253,639...3,262,105 JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chrNW_004624825:7,366,448...7,410,847
Ensembl chrNW_004624825:7,367,325...7,410,823 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624893:499,222...512,341
Ensembl chrNW_004624893:498,973...512,443 		JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chrNW_004624805:594,986...619,115
Ensembl chrNW_004624805:597,406...618,969 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Tdrd3 tudor domain containing 3 ISO RGD PMID:23211769 PMID:24035451 RGD:9479148 RGD:9479163 NCBI chrNW_004624748:21,656,003...21,815,589 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004624804:10,517,531...10,612,238
Ensembl chrNW_004624804:10,517,696...10,591,688 		JBrowse link
G Trim24 tripartite motif containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624765:18,966,663...19,079,857 JBrowse link
G Trim33 tripartite motif containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074 RGD:9479075 NCBI chrNW_004624772:10,026,951...10,140,529
Ensembl chrNW_004624772:10,030,640...10,140,607 		JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 ISO RGD PMID:23642229 PMID:24035451 RGD:9479074 RGD:9479148 NCBI chrNW_004624828:4,898,786...4,929,136
Ensembl chrNW_004624828:4,898,677...4,929,872 		JBrowse link
G Usp12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624776:11,300,819...11,396,318
Ensembl chrNW_004624776:11,301,045...11,393,313 		JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624745:17,005,020...17,029,220
Ensembl chrNW_004624745:17,006,175...17,028,952 		JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624794:216,668...223,259
Ensembl chrNW_004624794:216,951...223,269 		JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624849:4,516,849...4,557,656
Ensembl chrNW_004624849:4,515,584...4,557,972 		JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624781:8,918,532...9,016,022
Ensembl chrNW_004624781:8,918,526...9,016,070 		JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chrNW_004624750:11,697,919...11,725,421
Ensembl chrNW_004624750:11,710,218...11,724,529 		JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053 RGD:9479074 NCBI chrNW_004624760:2,275,660...2,291,796
Ensembl chrNW_004624760:2,274,813...2,292,379 		JBrowse link
G Wdr82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chrNW_004624730:6,032,426...6,067,303 JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chrNW_004624763:7,722,275...7,723,482 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3917
    regulatory pathway 2426
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1306
        chromatin modification/remodeling pathway 253
          chromatin modification pathway 191
            histone modification pathway 169
              altered histone modification pathway 0
Path 2
Term Annotations click to browse term
  pathway 3917
    regulatory pathway 2426
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1306
        DNA damage response pathway 352
          DNA repair pathway 330
            chromatin modification/remodeling pathway 253
              chromatin modification pathway 191
                histone modification pathway 169
                  altered histone modification pathway 0
paths to the root