PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: RNA polymerase II transcription elongation pathway
Accession: PW:0001331
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Definition: RNA polymerase II transcription elongation commences when the nascent transcript reaches about 25 residues. Some general transcription factors are released and the RNA polymerase II carries out elongation of the pre-mRNA transcript and proofreading. Various regulators control early elongation, proximal promoter pausing and full elongation proceedings. Nascent mRNA processing, splicing and alternative splicing are co-occurring.
Synonyms: related_synonym: RNA Polymerase II Transcription Elongation; transcription elongation by RNA polymerase II promoter
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Aff1
ALF transcription elongation factor 1
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr14:5,861,188...6,024,196
Ensembl chr14:5,863,961...6,024,729
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Aff4
ALF transcription elongation factor 4
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr10:37,498,825...37,579,751
Ensembl chr10:37,498,825...37,579,751
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Ccnk
cyclin K
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
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Ccnt1
cyclin T1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871
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Ccnt2
cyclin T2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
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Cdc73
cell division cycle 73
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Cdk9
cyclin-dependent kinase 9
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Eaf1
ELL associated factor 1
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071
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Eaf2
ELL associated factor 2
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610
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Ell
elongation factor for RNA polymerase II
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118
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Ell2
elongation factor for RNA polymerase II 2
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781
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Ell3
elongation factor for RNA polymerase II 3
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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Gtf2f1
general transcription factor IIF subunit 1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
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Gtf2f2
general transcription factor IIF subunit 2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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Mllt1
MLLT1, super elongation complex subunit
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr 9:1,731,077...1,775,985
Ensembl chr 9:1,731,080...1,775,970
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Mllt3
MLLT3, super elongation complex subunit
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361
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Ncbp1
nuclear cap binding protein subunit 1
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
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Ncbp2
nuclear cap binding protein subunit 2
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
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Nelfa
negative elongation factor complex member A
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994
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Nelfb
negative elongation factor complex member B
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403
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Nelfcd
negative elongation factor complex member C/D
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884
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Nelfe
negative elongation factor complex member E
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355
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Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
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Rngtt
RNA guanylyltransferase and 5'-phosphatase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295
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Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970
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Skic8
SKI8 subunit of superkiller complex
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813
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Ssrp1
structure specific recognition protein 1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
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Supt16h
SPT16 homolog, facilitates chromatin remodeling subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
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Supt5h
SPT5 homolog, DSIF elongation factor subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
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Tcea1
transcription elongation factor A1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 5:14,631,454...14,668,769
Ensembl chr 5:14,631,454...14,668,745 Ensembl chr15:14,631,454...14,668,745
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Tcea2
transcription elongation factor A2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 3:168,796,244...168,804,125
Ensembl chr 3:168,796,331...168,804,116
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Tcea3
transcription elongation factor A3
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chr 5:148,476,941...148,509,452
Ensembl chr 5:148,476,941...148,509,448
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all