Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA polymerase transcription pathway
go back to main search page
Accession:PW:0001272 term browser browse the term
Definition:The pathway of DNA transcription carried out by the prokaryotic and the several eukaryotic polymerases.



show annotations for term's descendants           Sort by:
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:57,657,762...57,661,865
Ensembl chr11:57,648,188...57,661,865
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 8:144,393,231...144,409,335
Ensembl chr 8:144,393,229...144,409,335
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr14:92,121,969...92,172,145
Ensembl chr14:92,121,969...92,172,145
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:9,423,654...9,473,101
Ensembl chr 2:9,423,651...9,473,101
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:99,438,943...99,457,373
Ensembl chr 7:99,438,922...99,457,373
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:69,239,569...69,274,358
Ensembl chr12:69,239,569...69,274,358
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:61,402,729...61,429,975
Ensembl chr11:61,402,641...61,430,031
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr20:56,392,379...56,406,362
Ensembl chr20:56,392,371...56,406,362
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:100,820,391...100,841,520
Ensembl chr  X:100,820,391...100,841,520
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr10:51,695,486...51,699,595
Ensembl chr10:51,695,486...51,699,595
JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:33,084,584...33,161,480
Ensembl chr11:33,077,188...33,162,371
JBrowse link
G DXO decapping exoribonuclease TAS RGD PMID:21957020 RGD:9681741 NCBI chr 6:31,969,815...31,972,138
Ensembl chr 6:31,969,810...31,972,290
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 4:53,377,641...53,460,862
Ensembl chr 4:53,377,569...53,464,382
JBrowse link
G NUDT21 nudix hydrolase 21 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr16:56,429,133...56,451,332
Ensembl chr16:56,429,133...56,452,199
JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 TAS RGD PMID:24243805 RGD:9681742 NCBI chr14:23,321,457...23,326,163
Ensembl chr14:23,321,457...23,326,163
JBrowse link
G PAPOLA poly(A) polymerase alpha TAS RGD PMID:24243805 RGD:9681742 NCBI chr14:96,502,376...96,567,116
Ensembl chr14:96,501,433...96,567,116
JBrowse link
G PAPOLB poly(A) polymerase beta TAS RGD PMID:24243805 RGD:9681742 NCBI chr 7:4,857,738...4,862,030
Ensembl chr 7:4,857,738...4,862,030
JBrowse link
G PAPOLG poly(A) polymerase gamma TAS RGD PMID:24243805 RGD:9681742 NCBI chr 2:60,756,268...60,802,086
Ensembl chr 2:60,756,253...60,802,086
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:83,157,131...83,187,451
Ensembl chr11:83,156,988...83,187,451
JBrowse link
G SYMPK symplekin scaffold protein TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:45,815,410...45,863,147
Ensembl chr19:45,815,410...45,863,225
JBrowse link
G WDR33 WD repeat domain 33 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:127,701,027...127,811,171
Ensembl chr 2:127,701,027...127,811,187
JBrowse link
G XRN2 5'-3' exoribonuclease 2 TAS RGD PMID:21957020 RGD:9681741 NCBI chr20:21,303,331...21,389,825
Ensembl chr20:21,303,331...21,389,825
JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 TAS RGD PMID:24354960 RGD:9684851 NCBI chr 9:97,633,821...97,673,748
Ensembl chr 9:97,633,668...97,673,748
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 TAS RGD PMID:24354960 RGD:9684851 NCBI chr 3:196,935,406...196,942,528
Ensembl chr 3:196,935,402...196,942,594
JBrowse link
G RAMAC RNA guanine-7 methyltransferase activating subunit TAS RGD PMID:24354960 RGD:9684851 NCBI chr15:82,986,210...82,991,057
Ensembl chr15:82,986,210...82,991,057
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase TAS RGD PMID:24354960 RGD:9684851 NCBI chr 6:88,609,897...88,963,618
Ensembl chr 6:88,609,897...88,963,618
JBrowse link
G RNMT RNA guanine-7 methyltransferase TAS RGD PMID:24354960 RGD:9684851 NCBI chr18:13,726,673...13,764,556
Ensembl chr18:13,726,660...13,764,556
JBrowse link
RNA polymerase I transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAVIN1 caveolae associated protein 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr17:42,402,449...42,423,256
Ensembl chr17:42,402,449...42,423,256
JBrowse link
G CDC73 cell division cycle 73 TAS RGD PMID:20060942 RGD:9588246 NCBI chr 1:193,122,031...193,254,815
Ensembl chr 1:193,121,983...193,254,815
JBrowse link
G CREBBP CREB binding protein TAS RGD PMID:24022641 RGD:9588250 NCBI chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr11:10,751,246...10,779,746
Ensembl chr11:10,751,018...10,801,625
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:51,938,025...51,971,778
Ensembl chr15:51,938,025...51,971,778
JBrowse link
G NCL nucleolin TAS RGD PMID:21893173 PMID:25225127 RGD:9588244, RGD:9588251 NCBI chr 2:231,453,531...231,464,484
Ensembl chr 2:231,453,531...231,483,641
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr19:39,385,629...39,391,106
Ensembl chr19:39,385,629...39,391,154
JBrowse link
G POLR1A RNA polymerase I subunit A TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 2:86,020,216...86,105,886
Ensembl chr 2:86,020,216...86,106,155
JBrowse link
G POLR1B RNA polymerase I subunit B TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 2:112,542,036...112,579,818
Ensembl chr 2:112,541,915...112,579,818
JBrowse link
G POLR1C RNA polymerase I and III subunit C TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 6:43,517,089...43,562,407
Ensembl chr 6:43,509,702...43,562,419
JBrowse link
G POLR1D RNA polymerase I and III subunit D TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr13:27,620,743...27,667,411
Ensembl chr13:27,620,742...27,744,237
JBrowse link
G POLR1E RNA polymerase I subunit E TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 9:37,485,948...37,503,697
Ensembl chr 9:37,485,948...37,503,697
JBrowse link
G POLR1F RNA polymerase I subunit F TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 7:19,695,461...19,709,037
Ensembl chr 7:19,695,461...19,709,037
JBrowse link
G POLR1G RNA polymerase I subunit G TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr19:45,406,644...45,410,737
Ensembl chr19:45,406,644...45,410,737
JBrowse link
G POLR1H RNA polymerase I subunit H TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 6:30,060,062...30,064,907
Ensembl chr 6:30,058,899...30,064,909
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr19:1,086,574...1,095,375
Ensembl chr19:1,086,574...1,095,380
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr22:37,953,663...38,041,915
Ensembl chr22:37,952,607...38,041,915
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 3:184,361,710...184,368,591
Ensembl chr 3:184,361,710...184,368,596
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 8:100,150,636...100,154,003
Ensembl chr 8:100,150,623...100,154,003
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L TAS RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr11:839,721...842,529
Ensembl chr11:837,356...842,529
JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr16:15,060,022...15,094,335
Ensembl chr16:15,060,033...15,094,311
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:41,417,095...41,483,563
Ensembl chr15:41,408,408...41,483,563
JBrowse link
G SIRT1 sirtuin 1 TAS RGD PMID:24022641 RGD:9588250 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT7 sirtuin 7 TAS RGD PMID:24022641 RGD:9588250 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:78,283,235...78,299,609
Ensembl chr15:78,277,835...78,299,703
JBrowse link
G SSRP1 structure specific recognition protein 1 TAS RGD PMID:21454601 RGD:9588245 NCBI chr11:57,325,988...57,335,892
Ensembl chr11:57,325,986...57,335,892
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit TAS RGD PMID:21454601 RGD:9588245 NCBI chr14:21,351,476...21,384,019
Ensembl chr14:21,351,476...21,384,019
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit TAS RGD PMID:21893173 RGD:9588244 NCBI chr17:58,345,178...58,352,201
Ensembl chr17:58,345,175...58,353,093
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit TAS RGD PMID:21893173 RGD:9588244 NCBI chr19:39,445,582...39,476,670
Ensembl chr19:39,436,156...39,476,670
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 1:28,602,850...28,648,269
Ensembl chr 1:28,587,829...28,648,291
JBrowse link
G TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 1:222,554,105...222,589,933
Ensembl chr 1:222,557,902...222,589,933
JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 2:9,843,442...9,934,416
Ensembl chr 2:9,843,443...9,934,416
JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr16:84,177,855...84,187,057
Ensembl chr16:84,177,847...84,187,070
JBrowse link
G TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr11:93,730,194...93,741,495
Ensembl chr11:93,729,948...93,784,391
JBrowse link
G TBP TATA-box binding protein TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 6:170,554,369...170,572,859
Ensembl chr 6:170,554,302...170,572,870
JBrowse link
G TTF1 transcription termination factor 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr 9:132,375,548...132,406,840
Ensembl chr 9:132,375,548...132,406,851
JBrowse link
G UBTF upstream binding transcription factor TAS RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr17:44,205,040...44,221,304
Ensembl chr17:44,205,033...44,221,626
JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 TAS RGD PMID:22895430 RGD:9681740 NCBI chr 4:86,935,011...87,141,039
Ensembl chr 4:86,935,002...87,141,039
JBrowse link
G AFF4 ALF transcription elongation factor 4 TAS RGD PMID:22895430 RGD:9681740 NCBI chr 5:132,875,395...132,963,634
Ensembl chr 5:132,875,395...132,963,634
JBrowse link
G CCNK cyclin K TAS RGD PMID:24050178 RGD:9681735 NCBI chr14:99,481,409...99,512,440
Ensembl chr14:99,481,169...99,535,044
JBrowse link
G CCNT1 cyclin T1 TAS RGD PMID:24050178 RGD:9681735 NCBI chr12:48,688,458...48,716,707
Ensembl chr12:48,688,458...48,716,998
JBrowse link
G CCNT2 cyclin T2 TAS RGD PMID:24050178 RGD:9681735 NCBI chr 2:134,918,822...134,959,342
Ensembl chr 2:134,918,235...134,959,342
JBrowse link
G CDC73 cell division cycle 73 TAS RGD PMID:20060942 RGD:9588246 NCBI chr 1:193,122,031...193,254,815
Ensembl chr 1:193,121,983...193,254,815
JBrowse link
G CDK9 cyclin dependent kinase 9 TAS RGD PMID:24050178 RGD:9681735 NCBI chr 9:127,786,034...127,790,792
Ensembl chr 9:127,785,679...127,790,792
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr11:10,751,246...10,779,746
Ensembl chr11:10,751,018...10,801,625
JBrowse link
G EAF1 ELL associated factor 1 TAS RGD PMID:22895430 RGD:9681740 NCBI chr 3:15,427,598...15,442,613
Ensembl chr 3:15,427,598...15,450,635
JBrowse link
G EAF2 ELL associated factor 2 TAS RGD PMID:22895430 RGD:9681740 NCBI chr 3:121,835,209...121,886,526
Ensembl chr 3:121,835,183...121,886,526
JBrowse link
G ELL elongation factor for RNA polymerase II TAS RGD PMID:22895430 RGD:9681740 NCBI chr19:18,442,663...18,522,070
Ensembl chr19:18,442,663...18,522,116
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 TAS RGD PMID:22895430 RGD:9681740 NCBI chr 5:95,885,098...95,961,851
Ensembl chr 5:95,885,098...95,961,851
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 TAS RGD PMID:22895430 RGD:9681740 NCBI chr15:43,772,620...43,776,966
Ensembl chr15:43,772,605...43,777,315
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 TAS RGD PMID:24050178 RGD:9681735 NCBI chr19:6,379,572...6,393,164
Ensembl chr19:6,379,572...6,393,981
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 TAS RGD PMID:24050178 RGD:9681735 NCBI chr13:45,120,510...45,284,893
Ensembl chr13:45,120,510...45,284,893
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:51,938,025...51,971,778
Ensembl chr15:51,938,025...51,971,778
JBrowse link
G MLLT1 MLLT1 super elongation complex subunit TAS RGD PMID:22895430 RGD:9681740 NCBI chr19:6,210,381...6,279,975
Ensembl chr19:6,210,381...6,279,975
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit TAS RGD PMID:22895430 RGD:9681740 NCBI chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 TAS RGD PMID:24354960 RGD:9684851 NCBI chr 9:97,633,821...97,673,748
Ensembl chr 9:97,633,668...97,673,748
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 TAS RGD PMID:24354960 RGD:9684851 NCBI chr 3:196,935,406...196,942,528
Ensembl chr 3:196,935,402...196,942,594
JBrowse link
G NELFA negative elongation factor complex member A TAS RGD PMID:24050178 RGD:9681735 NCBI chr 4:1,982,723...2,008,974
Ensembl chr 4:1,982,717...2,041,903
JBrowse link
G NELFB negative elongation factor complex member B TAS RGD PMID:24050178 RGD:9681735 NCBI chr 9:137,255,327...137,273,542
Ensembl chr 9:137,255,327...137,273,542
JBrowse link
G NELFCD negative elongation factor complex member C/D TAS RGD PMID:24050178 RGD:9681735 NCBI chr20:58,981,256...58,995,113
Ensembl chr20:58,981,208...58,995,133
JBrowse link
G NELFE negative elongation factor complex member E TAS RGD PMID:24050178 RGD:9681735 NCBI chr 6:31,952,087...31,958,971
Ensembl chr 6:31,952,087...31,959,038
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr19:39,385,629...39,391,106
Ensembl chr19:39,385,629...39,391,154
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase TAS RGD PMID:24354960 RGD:9684851 NCBI chr 6:88,609,897...88,963,618
Ensembl chr 6:88,609,897...88,963,618
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:41,417,095...41,483,563
Ensembl chr15:41,408,408...41,483,563
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex TAS RGD PMID:20060942 RGD:9588246 NCBI chr15:78,283,235...78,299,609
Ensembl chr15:78,277,835...78,299,703
JBrowse link
G SSRP1 structure specific recognition protein 1 TAS RGD PMID:24050178 RGD:9681735 NCBI chr11:57,325,988...57,335,892
Ensembl chr11:57,325,986...57,335,892
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit TAS RGD PMID:24050178 RGD:9681735 NCBI chr14:21,351,476...21,384,019
Ensembl chr14:21,351,476...21,384,019
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit TAS RGD PMID:24050178 RGD:9681735 NCBI chr17:58,345,178...58,352,201
Ensembl chr17:58,345,175...58,353,093
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit TAS RGD PMID:24050178 RGD:9681735 NCBI chr19:39,445,582...39,476,670
Ensembl chr19:39,436,156...39,476,670
JBrowse link
G TCEA1 transcription elongation factor A1 TAS RGD PMID:24050178 RGD:9681735 NCBI chr 8:53,966,556...54,022,448
Ensembl chr 8:53,966,552...54,022,448
JBrowse link
G TCEA2 transcription elongation factor A2 TAS RGD PMID:24050178 RGD:9681735 NCBI chr20:64,055,596...64,072,347
Ensembl chr20:64,049,836...64,072,347
JBrowse link
G TCEA3 transcription elongation factor A3 TAS RGD PMID:24050178 RGD:9681735 NCBI chr 1:23,380,909...23,424,748
Ensembl chr 1:23,380,909...23,424,748
JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 3:63,863,144...64,003,462
Ensembl chr 3:63,863,155...64,003,462
JBrowse link
G ATXN7L3 ataxin 7 like 3 TAS RGD PMID:22426530 RGD:9681728 NCBI chr17:44,191,805...44,199,884
Ensembl chr17:44,191,805...44,200,113
JBrowse link
G CCNH cyclin H TAS RGD PMID:21592869 RGD:9681726 NCBI chr 5:87,311,471...87,412,930
Ensembl chr 5:87,318,416...87,413,029
JBrowse link
G CDK7 cyclin dependent kinase 7 TAS RGD PMID:21592869 RGD:9681726 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430
JBrowse link
G DR1 down-regulator of transcription 1 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 1:93,345,907...93,369,493
Ensembl chr 1:93,345,907...93,369,493
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit TAS RGD PMID:22426530 RGD:9681728 NCBI chr 8:109,334,347...109,345,954
Ensembl chr 8:109,334,324...109,345,954
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit TAS RGD PMID:21592869 RGD:9681726 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit TAS RGD PMID:21592869 RGD:9681726 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease TAS RGD PMID:21592869 RGD:9681726 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995
JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 TAS RGD PMID:24120742 RGD:9681721 NCBI chr14:81,175,452...81,221,390
Ensembl chr14:81,175,452...81,221,377
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 TAS RGD PMID:24120742 RGD:9681721 NCBI chr15:59,638,062...59,657,515
Ensembl chr15:59,638,062...59,657,541
JBrowse link
G GTF2B general transcription factor IIB TAS RGD PMID:24120742 RGD:9681721 NCBI chr 1:88,852,633...88,891,567
Ensembl chr 1:88,852,633...88,891,944
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 TAS RGD PMID:24120742 RGD:9681721 NCBI chr 3:120,742,744...120,783,069
Ensembl chr 3:120,742,637...120,783,069
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 TAS RGD PMID:24120742 RGD:9681721 NCBI chr 8:30,578,318...30,658,236
Ensembl chr 8:30,578,318...30,658,236
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 TAS RGD PMID:24120742 RGD:9681721 NCBI chr19:6,379,572...6,393,164
Ensembl chr19:6,379,572...6,393,981
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 TAS RGD PMID:24120742 RGD:9681721 NCBI chr13:45,120,510...45,284,893
Ensembl chr13:45,120,510...45,284,893
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 TAS RGD PMID:21592869 RGD:9681726 NCBI chr11:18,322,567...18,367,045
Ensembl chr11:18,322,295...18,367,045
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 TAS RGD PMID:21592869 RGD:9681726 NCBI chr 5:71,035,347...71,067,676
Ensembl chr 5:71,035,016...71,067,689
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 TAS RGD PMID:21592869 RGD:9681726 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 TAS RGD PMID:21592869 RGD:9681726 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 TAS RGD PMID:21592869 RGD:9681726 NCBI chr 6:158,168,350...158,199,344
Ensembl chr 6:158,168,350...158,199,344
JBrowse link
G HCFC2 host cell factor C2 TAS RGD PMID:22426530 RGD:9681728 NCBI chr12:104,064,531...104,106,524
Ensembl chr12:104,064,531...104,106,524
JBrowse link
G KAT14 lysine acetyltransferase 14 TAS RGD PMID:22426530 RGD:9681728 NCBI chr20:18,137,153...18,188,035
Ensembl chr20:18,137,228...18,188,387
JBrowse link
G KAT2A lysine acetyltransferase 2A TAS RGD PMID:22426530 RGD:9681728 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G KAT2B lysine acetyltransferase 2B TAS RGD PMID:22426530 RGD:9681728 NCBI chr 3:20,040,446...20,154,404
Ensembl chr 3:20,040,446...20,154,404
JBrowse link
G MBIP MAP3K12 binding inhibitory protein 1 TAS RGD PMID:22426530 RGD:9681728 NCBI chr14:36,298,564...36,320,637
Ensembl chr14:36,298,564...36,320,637
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase TAS RGD PMID:21592869 RGD:9681726 NCBI chr14:60,734,761...60,969,965
Ensembl chr14:60,734,742...60,969,965
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit TAS RGD PMID:22426530 RGD:9681728 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675
JBrowse link
G SGF29 SAGA complex associated factor 29 TAS RGD PMID:22426530 RGD:9681728 NCBI chr16:28,553,920...28,591,790
Ensembl chr16:28,553,915...28,591,790
JBrowse link
G SUPT20H SPT20 homolog, SAGA complex component TAS RGD PMID:22426530 RGD:9681728 NCBI chr13:37,009,312...37,059,688
Ensembl chr13:37,009,312...37,059,713
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component TAS RGD PMID:22426530 RGD:9681728 NCBI chr 6:44,809,057...45,377,934
Ensembl chr 6:44,809,317...45,377,953
JBrowse link
G SUPT7L SPT7 like, STAGA complex subunit gamma TAS RGD PMID:22426530 RGD:9681728 NCBI chr 2:27,642,568...27,663,614
Ensembl chr 2:27,650,809...27,663,840
JBrowse link
G TADA1 transcriptional adaptor 1 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 1:166,856,510...166,876,264
Ensembl chr 1:166,856,510...166,876,264
JBrowse link
G TADA2A transcriptional adaptor 2A TAS RGD PMID:22426530 RGD:9681728 NCBI chr17:37,406,886...37,479,725
Ensembl chr17:37,406,886...37,479,725
JBrowse link
G TADA2B transcriptional adaptor 2B TAS RGD PMID:22426530 RGD:9681728 NCBI chr 4:7,043,372...7,057,952
Ensembl chr 4:7,041,899...7,057,952
JBrowse link
G TADA3 transcriptional adaptor 3 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 3:9,779,967...9,793,011
Ensembl chr 3:9,779,967...9,793,011
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 TAS RGD PMID:23146842 RGD:9681723 NCBI chr  X:71,366,357...71,530,525
Ensembl chr  X:71,366,136...71,532,374
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 TAS RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr11:6,606,294...6,612,216
Ensembl chr11:6,606,294...6,612,539
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 6:34,877,462...34,888,071
Ensembl chr 6:34,877,462...34,889,192
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 TAS RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 1:28,602,850...28,648,269
Ensembl chr 1:28,587,829...28,648,291
JBrowse link
G TAF13 TATA-box binding protein associated factor 13 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 1:109,064,140...109,076,003
Ensembl chr 1:109,062,496...109,076,012
JBrowse link
G TAF15 TATA-box binding protein associated factor 15 TAS RGD PMID:23146842 RGD:9681723 NCBI chr17:35,809,484...35,847,242
Ensembl chr17:35,809,482...35,864,615
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 8:119,730,774...119,832,841
Ensembl chr 8:119,730,774...119,832,863
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 TAS RGD PMID:23146842 RGD:9681723 NCBI chr10:7,818,505...8,016,631
Ensembl chr10:7,818,497...8,016,631
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 TAS RGD PMID:23146842 RGD:9681723 NCBI chr20:61,974,798...62,065,881
Ensembl chr20:61,953,469...62,065,881
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 TAS RGD PMID:23146842 RGD:9681723 NCBI chr10:103,367,976...103,389,065
Ensembl chr10:103,367,966...103,389,065
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like TAS RGD PMID:22426530 RGD:9681728 NCBI chr 1:229,593,134...229,626,122
Ensembl chr 1:229,593,134...229,626,122
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 7:100,107,070...100,127,171
Ensembl chr 7:100,106,876...100,119,841
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like TAS RGD PMID:22426530 RGD:9681728 NCBI chr11:62,771,396...62,787,342
Ensembl chr11:62,771,357...62,787,342
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 5:141,318,490...141,320,784
Ensembl chr 5:141,259,884...141,320,784
JBrowse link
G TAF8 TATA-box binding protein associated factor 8 TAS RGD PMID:23146842 RGD:9681723 NCBI chr 6:42,050,524...42,087,462
Ensembl chr 6:42,050,513...42,087,461
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 TAS RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 5:69,364,743...69,369,824
Ensembl chr 5:69,362,026...69,370,013
JBrowse link
G TBP TATA-box binding protein TAS RGD PMID:24120742 PMID:23146842 RGD:9681721, RGD:9681723 NCBI chr 6:170,554,369...170,572,859
Ensembl chr 6:170,554,302...170,572,870
JBrowse link
G TRRAP transformation/transcription domain associated protein TAS RGD PMID:22426530 RGD:9681728 NCBI chr 7:98,878,532...99,013,241
Ensembl chr 7:98,877,933...99,050,831
JBrowse link
G USP22 ubiquitin specific peptidase 22 TAS RGD PMID:22426530 RGD:9681728 NCBI chr17:20,999,596...21,043,419
Ensembl chr17:20,999,596...21,043,760
JBrowse link
G WDR5 WD repeat domain 5 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 9:134,135,199...134,159,968
Ensembl chr 9:134,135,365...134,159,968
JBrowse link
G YEATS2 YEATS domain containing 2 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 3:183,697,797...183,812,624
Ensembl chr 3:183,697,797...183,812,624
JBrowse link
G ZZZ3 zinc finger ZZ-type containing 3 TAS RGD PMID:22426530 RGD:9681728 NCBI chr 1:77,562,416...77,683,398
Ensembl chr 1:77,562,416...77,683,419
JBrowse link
RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNC cyclin C TAS RGD PMID:24088064 RGD:9681732 NCBI chr 6:99,542,387...99,568,814
Ensembl chr 6:99,542,387...99,568,825
JBrowse link
G CDC14A cell division cycle 14A TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 1:100,345,001...100,520,277
Ensembl chr 1:100,325,629...100,520,277
JBrowse link
G CDC14B cell division cycle 14B TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 9:96,490,939...96,619,843
Ensembl chr 9:96,490,241...96,619,843
JBrowse link
G CDK12 cyclin dependent kinase 12 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr17:39,461,486...39,567,559
Ensembl chr17:39,461,486...39,567,559
JBrowse link
G CDK19 cyclin dependent kinase 19 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 6:110,609,978...110,815,855
Ensembl chr 6:110,609,978...110,815,958
JBrowse link
G CDK7 cyclin dependent kinase 7 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430
JBrowse link
G CDK8 cyclin dependent kinase 8 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:24088064 PMID:23837720 PMID:22622228 RGD:9681732, RGD:9681738, RGD:9681737 NCBI chr13:26,254,129...26,405,238
Ensembl chr13:26,254,104...26,420,982
JBrowse link
G CDK9 cyclin dependent kinase 9 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 9:127,786,034...127,790,792
Ensembl chr 9:127,785,679...127,790,792
JBrowse link
G CTDP1 CTD phosphatase subunit 1 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr18:79,676,768...79,756,625
Ensembl chr18:79,679,803...79,754,503
JBrowse link
G CTDSP1 CTD small phosphatase 1 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 2:218,396,351...218,405,941
Ensembl chr 2:218,397,136...218,405,941
JBrowse link
G MED1 mediator complex subunit 1 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:39,404,285...39,451,263
Ensembl chr17:39,404,285...39,451,272
JBrowse link
G MED10 mediator complex subunit 10 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 5:6,371,874...6,378,547
Ensembl chr 5:6,371,874...6,378,571
JBrowse link
G MED11 mediator complex subunit 11 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:4,731,428...4,733,607
Ensembl chr17:4,731,428...4,733,608
JBrowse link
G MED12 mediator complex subunit 12 TAS RGD PMID:24088064 RGD:9681732 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103
JBrowse link
G MED12L mediator complex subunit 12L TAS RGD PMID:24088064 RGD:9681732 NCBI chr 3:151,085,664...151,436,653
Ensembl chr 3:151,085,286...151,437,072
JBrowse link
G MED13 mediator complex subunit 13 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:61,942,605...62,065,278
Ensembl chr17:61,942,605...62,065,278
JBrowse link
G MED13L mediator complex subunit 13L TAS RGD PMID:24088064 RGD:9681732 NCBI chr12:115,958,576...116,277,693
Ensembl chr12:115,957,905...116,277,693
JBrowse link
G MED14 mediator complex subunit 14 TAS RGD PMID:24088064 RGD:9681732 NCBI chr  X:40,648,305...40,736,159
Ensembl chr  X:40,648,305...40,735,858
JBrowse link
G MED15 mediator complex subunit 15 TAS RGD PMID:24088064 RGD:9681732 NCBI chr22:20,507,610...20,587,619
Ensembl chr22:20,495,913...20,587,632
JBrowse link
G MED16 mediator complex subunit 16 TAS RGD PMID:24088064 RGD:9681732 NCBI chr19:867,963...893,187
Ensembl chr19:867,630...893,218
JBrowse link
G MED17 mediator complex subunit 17 TAS RGD PMID:24088064 RGD:9681732 NCBI chr11:93,784,282...93,814,963
Ensembl chr11:93,784,227...93,814,963
JBrowse link
G MED18 mediator complex subunit 18 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 1:28,329,040...28,335,965
Ensembl chr 1:28,329,002...28,335,965
JBrowse link
G MED19 mediator complex subunit 19 TAS RGD PMID:24088064 RGD:9681732 NCBI chr11:57,703,709...57,712,215
Ensembl chr11:57,703,710...57,712,221
JBrowse link
G MED20 mediator complex subunit 20 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 6:41,905,354...41,921,139
Ensembl chr 6:41,905,354...41,921,139
JBrowse link
G MED21 mediator complex subunit 21 TAS RGD PMID:24088064 RGD:9681732 NCBI chr12:27,022,558...27,038,951
Ensembl chr12:27,022,546...27,066,343
JBrowse link
G MED22 mediator complex subunit 22 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 9:133,338,312...133,348,131
Ensembl chr 9:133,338,312...133,348,131
JBrowse link
G MED23 mediator complex subunit 23 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 6:131,573,966...131,628,313
Ensembl chr 6:131,573,966...131,628,242
JBrowse link
G MED24 mediator complex subunit 24 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:40,019,104...40,054,408
Ensembl chr17:40,019,097...40,061,215
JBrowse link
G MED25 mediator complex subunit 25 TAS RGD PMID:24088064 RGD:9681732 NCBI chr19:49,818,289...49,840,384
Ensembl chr19:49,818,282...49,840,383
JBrowse link
G MED26 mediator complex subunit 26 TAS RGD PMID:24088064 RGD:9681732 NCBI chr19:16,574,919...16,628,204
Ensembl chr19:16,574,907...16,629,062
JBrowse link
G MED27 mediator complex subunit 27 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 9:131,860,112...132,079,867
Ensembl chr 9:131,852,928...132,079,867
JBrowse link
G MED28 mediator complex subunit 28 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 4:17,614,641...17,634,105
Ensembl chr 4:17,614,641...17,634,105
JBrowse link
G MED29 mediator complex subunit 29 TAS RGD PMID:24088064 RGD:9681732 NCBI chr19:39,391,378...39,400,641
Ensembl chr19:39,391,303...39,400,641
JBrowse link
G MED30 mediator complex subunit 30 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 8:117,520,713...117,540,262
Ensembl chr 8:117,520,713...117,540,262
JBrowse link
G MED31 mediator complex subunit 31 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:6,643,311...6,651,605
Ensembl chr17:6,643,311...6,651,634
JBrowse link
G MED4 mediator complex subunit 4 TAS RGD PMID:24088064 RGD:9681732 NCBI chr13:48,075,724...48,095,104
Ensembl chr13:48,053,323...48,095,131
JBrowse link
G MED6 mediator complex subunit 6 TAS RGD PMID:24088064 RGD:9681732 NCBI chr14:70,583,221...70,600,655
Ensembl chr14:70,581,257...70,600,690
JBrowse link
G MED7 mediator complex subunit 7 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 5:157,137,424...157,142,865
Ensembl chr 5:157,137,424...157,159,019
JBrowse link
G MED8 mediator complex subunit 8 TAS RGD PMID:24088064 RGD:9681732 NCBI chr 1:43,383,917...43,389,800
Ensembl chr 1:43,383,917...43,389,808
JBrowse link
G MED9 mediator complex subunit 9 TAS RGD PMID:24088064 RGD:9681732 NCBI chr17:17,477,000...17,493,221
Ensembl chr17:17,476,994...17,493,221
JBrowse link
G POLR2A RNA polymerase II subunit A TAS RGD PMID:22960599 RGD:9588243 NCBI chr17:7,484,366...7,514,616
Ensembl chr17:7,484,366...7,514,616
JBrowse link
G POLR2B RNA polymerase II subunit B TAS RGD PMID:22960599 RGD:9588243 NCBI chr 4:56,978,896...57,031,158
Ensembl chr 4:56,977,722...57,031,158
JBrowse link
G POLR2C RNA polymerase II subunit C TAS RGD PMID:22960599 RGD:9588243 NCBI chr16:57,462,679...57,472,009
Ensembl chr16:57,462,660...57,472,009
JBrowse link
G POLR2D RNA polymerase II subunit D TAS RGD PMID:22960599 RGD:9588243 NCBI chr 2:127,843,553...127,858,155
Ensembl chr 2:127,843,553...127,858,155
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E TAS RGD PMID:22960599 RGD:9588243 NCBI chr19:1,086,574...1,095,375
Ensembl chr19:1,086,574...1,095,380
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F TAS RGD PMID:22960599 RGD:9588243 NCBI chr22:37,953,663...38,041,915
Ensembl chr22:37,952,607...38,041,915
JBrowse link
G POLR2G RNA polymerase II subunit G TAS RGD PMID:22960599 RGD:9588243 NCBI chr11:62,761,580...62,766,710
Ensembl chr11:62,761,565...62,766,710
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H TAS RGD PMID:22960599 RGD:9588243 NCBI chr 3:184,361,710...184,368,591
Ensembl chr 3:184,361,710...184,368,596
JBrowse link
G POLR2I RNA polymerase II subunit I TAS RGD PMID:22960599 RGD:9588243 NCBI chr19:36,113,709...36,114,875
Ensembl chr19:36,113,709...36,115,213
JBrowse link
G POLR2J RNA polymerase II subunit J TAS RGD PMID:22960599 RGD:9588243 NCBI chr 7:102,473,128...102,478,922
Ensembl chr 7:102,473,128...102,478,922
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K TAS RGD PMID:22960599 RGD:9588243 NCBI chr 8:100,150,636...100,154,003
Ensembl chr 8:100,150,623...100,154,003
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L TAS RGD PMID:22960599 RGD:9588243 NCBI chr11:839,721...842,529
Ensembl chr11:837,356...842,529
JBrowse link
G RPAP2 RNA polymerase II associated protein 2 TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 1:92,299,059...92,402,056
Ensembl chr 1:92,299,059...92,402,056
JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase TAS pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 1:1,541,673...1,574,863
Ensembl chr 1:1,541,673...1,574,863
JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:57,657,762...57,661,865
Ensembl chr11:57,648,188...57,661,865
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 8:144,393,231...144,409,335
Ensembl chr 8:144,393,229...144,409,335
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr14:92,121,969...92,172,145
Ensembl chr14:92,121,969...92,172,145
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:9,423,654...9,473,101
Ensembl chr 2:9,423,651...9,473,101
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:99,438,943...99,457,373
Ensembl chr 7:99,438,922...99,457,373
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:69,239,569...69,274,358
Ensembl chr12:69,239,569...69,274,358
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:61,402,729...61,429,975
Ensembl chr11:61,402,641...61,430,031
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr20:56,392,379...56,406,362
Ensembl chr20:56,392,371...56,406,362
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:100,820,391...100,841,520
Ensembl chr  X:100,820,391...100,841,520
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr10:51,695,486...51,699,595
Ensembl chr10:51,695,486...51,699,595
JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:33,084,584...33,161,480
Ensembl chr11:33,077,188...33,162,371
JBrowse link
G DXO decapping exoribonuclease TAS RGD PMID:21957020 RGD:9681741 NCBI chr 6:31,969,815...31,972,138
Ensembl chr 6:31,969,810...31,972,290
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 4:53,377,641...53,460,862
Ensembl chr 4:53,377,569...53,464,382
JBrowse link
G NUDT21 nudix hydrolase 21 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr16:56,429,133...56,451,332
Ensembl chr16:56,429,133...56,452,199
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr11:83,157,131...83,187,451
Ensembl chr11:83,156,988...83,187,451
JBrowse link
G SYMPK symplekin scaffold protein TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:45,815,410...45,863,147
Ensembl chr19:45,815,410...45,863,225
JBrowse link
G WDR33 WD repeat domain 33 TAS RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:127,701,027...127,811,171
Ensembl chr 2:127,701,027...127,811,187
JBrowse link
G XRN2 5'-3' exoribonuclease 2 TAS RGD PMID:21957020 RGD:9681741 NCBI chr20:21,303,331...21,389,825
Ensembl chr20:21,303,331...21,389,825
JBrowse link
RNA polymerase III transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDP1 BDP1 general transcription factor IIIB subunit TAS RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 5:71,455,651...71,578,288
Ensembl chr 5:71,455,651...71,567,820
JBrowse link
G BRF1 BRF1 general transcription factor IIIB subunit TAS RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr14:105,209,286...105,315,589
Ensembl chr14:105,209,286...105,315,589
JBrowse link
G BRF2 BRF2 general transcription factor IIIB subunit TAS RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 8:37,843,268...37,849,861
Ensembl chr 8:37,843,268...37,849,861
JBrowse link
G CRCP CGRP receptor component TAS RGD PMID:12391170 RGD:9685217 NCBI chr 7:66,114,818...66,154,568
Ensembl chr 7:66,114,604...66,154,568
JBrowse link
G GTF3A general transcription factor IIIA TAS RGD PMID:23031840 RGD:9588284 NCBI chr13:27,424,619...27,435,823
Ensembl chr13:27,424,619...27,435,823
JBrowse link
G GTF3C1 general transcription factor IIIC subunit 1 TAS RGD PMID:23031840 RGD:9588284 NCBI chr16:27,460,613...27,549,913
Ensembl chr16:27,459,555...27,549,913
JBrowse link
G GTF3C2 general transcription factor IIIC subunit 2 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 2:27,325,854...27,356,764
Ensembl chr 2:27,325,849...27,356,999
JBrowse link
G GTF3C3 general transcription factor IIIC subunit 3 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 2:196,763,035...196,799,683
Ensembl chr 2:196,763,035...196,799,725
JBrowse link
G GTF3C4 general transcription factor IIIC subunit 4 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 9:132,670,035...132,694,955
Ensembl chr 9:132,670,035...132,694,953
JBrowse link
G GTF3C5 general transcription factor IIIC subunit 5 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 9:133,030,708...133,058,503
Ensembl chr 9:133,030,675...133,058,503
JBrowse link
G GTF3C6 general transcription factor IIIC subunit 6 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 6:110,958,706...110,967,872
Ensembl chr 6:110,958,706...110,967,890
JBrowse link
G MAF1 MAF1 homolog, negative regulator of RNA polymerase III TAS RGD PMID:23031840 PMID:23165150 RGD:9588284, RGD:9685221 NCBI chr 8:144,104,461...144,107,611
Ensembl chr 8:144,104,420...144,107,611
JBrowse link
G POLR1C RNA polymerase I and III subunit C TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 6:43,517,089...43,562,407
Ensembl chr 6:43,509,702...43,562,419
JBrowse link
G POLR1D RNA polymerase I and III subunit D TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr13:27,620,743...27,667,411
Ensembl chr13:27,620,742...27,744,237
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr19:1,086,574...1,095,375
Ensembl chr19:1,086,574...1,095,380
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr22:37,953,663...38,041,915
Ensembl chr22:37,952,607...38,041,915
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 3:184,361,710...184,368,591
Ensembl chr 3:184,361,710...184,368,596
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 8:100,150,636...100,154,003
Ensembl chr 8:100,150,623...100,154,003
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr11:839,721...842,529
Ensembl chr11:837,356...842,529
JBrowse link
G POLR3A RNA polymerase III subunit A TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr10:77,975,149...78,029,515
Ensembl chr10:77,953,148...78,029,522
JBrowse link
G POLR3B RNA polymerase III subunit B TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr12:106,357,748...106,510,198
Ensembl chr12:106,357,748...106,510,198
JBrowse link
G POLR3C RNA polymerase III subunit C TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 1:145,824,200...145,844,402
Ensembl chr 1:145,824,053...145,844,402
JBrowse link
G POLR3D RNA polymerase III subunit D TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 8:22,245,133...22,254,601
Ensembl chr 8:22,245,133...22,254,601
JBrowse link
G POLR3E RNA polymerase III subunit E TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr16:22,297,409...22,335,096
Ensembl chr16:22,297,375...22,335,101
JBrowse link
G POLR3F RNA polymerase III subunit F TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr20:18,467,390...18,484,646
Ensembl chr20:18,466,878...18,484,648
JBrowse link
G POLR3G RNA polymerase III subunit G TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 5:90,473,929...90,514,557
Ensembl chr 5:90,471,748...90,514,557
JBrowse link
G POLR3GL RNA polymerase III subunit GL TAS RGD PMID:20890107 RGD:9685218 NCBI chr 1:145,964,690...145,978,848
Ensembl chr 1:145,964,690...145,978,848
JBrowse link
G POLR3H RNA polymerase III subunit H TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr22:41,525,799...41,544,606
Ensembl chr22:41,525,799...41,544,606
JBrowse link
G POLR3K RNA polymerase III subunit K TAS RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr16:46,407...53,608
Ensembl chr16:46,407...53,608
JBrowse link
G POU2F1 POU class 2 homeobox 1 TAS RGD PMID:20890107 RGD:9685218 NCBI chr 1:167,220,885...167,427,345
Ensembl chr 1:167,220,876...167,427,345
JBrowse link
G RB1 RB transcriptional corepressor 1 TAS RGD PMID:23063750 RGD:9685222 NCBI chr13:48,303,751...48,481,890
Ensembl chr13:48,303,744...48,599,436
JBrowse link
G SNAPC1 small nuclear RNA activating complex polypeptide 1 TAS RGD PMID:23031840 RGD:9588284 NCBI chr14:61,762,420...61,796,428
Ensembl chr14:61,762,420...61,796,428
JBrowse link
G SNAPC2 small nuclear RNA activating complex polypeptide 2 TAS RGD PMID:23031840 RGD:9588284 NCBI chr19:7,920,338...7,923,250
Ensembl chr19:7,920,338...7,923,250
JBrowse link
G SNAPC3 small nuclear RNA activating complex polypeptide 3 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 9:15,422,876...15,466,735
Ensembl chr 9:15,422,734...15,465,953
JBrowse link
G SNAPC4 small nuclear RNA activating complex polypeptide 4 TAS RGD PMID:23031840 RGD:9588284 NCBI chr 9:136,375,571...136,400,170
Ensembl chr 9:136,375,567...136,400,176
JBrowse link
G SNAPC5 small nuclear RNA activating complex polypeptide 5 TAS RGD PMID:23031840 RGD:9588284 NCBI chr15:66,489,748...66,497,762
Ensembl chr15:66,490,135...66,497,780
JBrowse link
G SUB1 SUB1 regulator of transcription TAS RGD PMID:23165150 PMID:23128323 RGD:9685221, RGD:9685220 NCBI chr 5:32,585,557...32,604,079
Ensembl chr 5:32,531,633...32,604,507
JBrowse link
G TBP TATA-box binding protein TAS RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 6:170,554,369...170,572,859
Ensembl chr 6:170,554,302...170,572,870
JBrowse link
G ZNF143 zinc finger protein 143 TAS RGD PMID:20890107 RGD:9685218 NCBI chr11:9,461,012...9,528,524
Ensembl chr11:9,460,319...9,528,524
JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor TAS RGD PMID:23592432 RGD:9686090 NCBI chr20:36,236,478...36,256,933
Ensembl chr20:36,236,131...36,270,918
JBrowse link
G ACIN1 apoptotic chromatin condensation inducer 1 IEA KEGG hsa:03040 NCBI chr14:23,058,564...23,095,614
Ensembl chr14:23,058,564...23,095,614
JBrowse link
G AQR aquarius intron-binding spliceosomal factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr15:34,851,782...34,969,742
Ensembl chr15:34,851,782...34,969,742
JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 1:114,567,557...114,581,615
Ensembl chr 1:114,567,557...114,581,629
JBrowse link
G BUD31 BUD31 homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 7:99,408,969...99,419,616
Ensembl chr 7:99,408,641...99,419,616
JBrowse link
G CCDC12 coiled-coil domain containing 12 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 3:46,921,730...46,981,994
Ensembl chr 3:46,916,634...46,982,010
JBrowse link
G CDC40 cell division cycle 40 IEA KEGG hsa:03040 NCBI chr 6:110,180,427...110,232,232
Ensembl chr 6:110,180,141...110,254,275
JBrowse link
G CDC5L cell division cycle 5 like IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 6:44,387,706...44,450,425
Ensembl chr 6:44,387,706...44,450,425
JBrowse link
G CHERP calcium homeostasis endoplasmic reticulum protein IEA KEGG hsa:03040 NCBI chr19:16,517,894...16,542,437
Ensembl chr19:16,517,894...16,542,437
JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr20:20,034,368...20,056,046
Ensembl chr20:20,034,368...20,056,046
JBrowse link
G CTNNBL1 catenin beta like 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr20:37,694,030...37,872,118
Ensembl chr20:37,694,030...37,872,129
JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:94,962,620...94,973,556
Ensembl chr11:94,962,620...94,973,586
JBrowse link
G DDX23 DEAD-box helicase 23 IEA
TAS
KEGG
RGD
PMID:19239890 PMID:23454554 hsa:03040, RGD:9686089, RGD:9686093 NCBI chr12:48,829,756...48,852,163
Ensembl chr12:48,829,756...48,852,842
JBrowse link
G DDX39B DExD-box helicase 39B IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 6:31,530,226...31,542,003
Ensembl chr 6:31,530,219...31,542,448
JBrowse link
G DDX42 DEAD-box helicase 42 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr17:63,773,800...63,819,317
Ensembl chr17:63,773,603...63,819,317
JBrowse link
G DDX46 DEAD-box helicase 46 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 5:134,758,779...134,831,121
Ensembl chr 5:134,758,771...134,855,133
JBrowse link
G DDX5 DEAD-box helicase 5 IEA KEGG hsa:03040 NCBI chr17:64,498,254...64,506,866
Ensembl chr17:64,498,254...64,508,199
JBrowse link
G DHX15 DEAH-box helicase 15 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 4:24,527,475...24,584,554
Ensembl chr 4:24,517,441...24,584,554
JBrowse link
G DHX16 DEAH-box helicase 16 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr 6:30,653,127...30,673,006
Ensembl chr 6:30,653,119...30,673,006
JBrowse link
G DHX38 DEAH-box helicase 38 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr16:72,093,847...72,112,912
Ensembl chr16:72,093,613...72,112,912
JBrowse link
G DHX8 DEAH-box helicase 8 IEA
TAS
KEGG
RGD
PMID:23454554 hsa:03040, RGD:9686093 NCBI chr17:43,483,975...43,544,799
Ensembl chr17:43,483,865...43,610,338
JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 IEA
TAS
KEGG
RGD
PMID:23454554 PMID:23592432 hsa:03040, RGD:9686093, RGD:9686090 NCBI chr17:44,849,948...44,899,445
Ensembl chr17:44,849,948...44,899,445
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr17:80,134,369...80,147,128
Ensembl chr17:80,134,369...80,147,151
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:137,745,651...137,754,363
Ensembl chr 5:137,745,651...137,754,363
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:54,280,726...54,287,087
Ensembl chr12:54,280,193...54,287,088
JBrowse link
G HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1 like 2 IEA KEGG hsa:03040 NCBI chr13:52,617,525...52,643,773
Ensembl chr13:52,642,431...52,643,773
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 7:26,189,927...26,200,746
Ensembl chr 7:26,171,151...26,201,529
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:177,212,794...177,223,959
Ensembl chr 2:177,212,694...177,226,106
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:178,204,533...178,211,163
Ensembl chr 5:178,204,533...178,211,163
JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr14:21,209,147...21,269,442
Ensembl chr14:21,209,136...21,269,494
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D TAS RGD PMID:17537823 RGD:9686091 NCBI chr 4:82,352,498...82,373,991
Ensembl chr 4:82,352,498...82,374,503
JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 5:179,614,178...179,634,784
Ensembl chr 5:179,614,178...179,634,784
JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 TAS RGD PMID:17537823 RGD:9686091 NCBI chr10:68,331,693...68,343,196
Ensembl chr10:68,331,174...68,343,193
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 9:83,968,083...83,980,615
Ensembl chr 9:83,968,083...83,980,631
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L TAS RGD PMID:17537823 RGD:9686091 NCBI chr19:38,836,370...38,852,347
Ensembl chr19:38,836,370...38,852,347
JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:8,444,975...8,489,114
Ensembl chr19:8,444,767...8,489,114
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R TAS RGD PMID:17537823 RGD:9686091 NCBI chr 1:23,304,688...23,344,284
Ensembl chr 1:23,303,771...23,344,336
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:244,850,297...244,864,543
Ensembl chr 1:244,840,638...244,864,560
JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A IEA KEGG hsa:03040 NCBI chr 6:31,815,543...31,817,942
Ensembl chr 6:31,815,543...31,817,946
JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B IEA KEGG hsa:03040 NCBI chr 6:31,827,738...31,830,254
Ensembl chr 6:31,827,738...31,830,254
JBrowse link
G HSPA1L heat shock protein family A (Hsp70) member 1 like IEA KEGG hsa:03040 NCBI chr 6:31,809,619...31,815,283
Ensembl chr 6:31,809,619...31,815,283
JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 IEA KEGG hsa:03040 NCBI chr14:64,535,905...64,543,237
Ensembl chr14:64,535,905...64,546,173
JBrowse link
G HSPA6 heat shock protein family A (Hsp70) member 6 IEA KEGG hsa:03040 NCBI chr 1:161,524,540...161,526,894
Ensembl chr 1:161,524,540...161,526,894
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:123,057,489...123,062,462
Ensembl chr11:123,057,489...123,063,230
JBrowse link
G ISY1 ISY1 splicing factor homolog IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 3:129,127,415...129,161,063
Ensembl chr 3:129,127,415...129,161,063
JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 6:31,797,396...31,806,966
Ensembl chr 6:31,797,396...31,806,966
JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 3:14,178,817...14,201,122
Ensembl chr 3:14,178,817...14,201,122
JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:18,306,236...18,323,076
Ensembl chr19:18,306,236...18,323,112
JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 7:32,485,338...32,495,283
Ensembl chr 7:32,485,338...32,495,283
JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 4:146,175,718...146,191,535
Ensembl chr 4:146,175,703...146,200,000
JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:2,321,521...2,328,586
Ensembl chr19:2,321,520...2,328,611
JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 7:118,184,164...118,204,035
Ensembl chr 7:118,184,144...118,204,035
JBrowse link
G MAGOH mago homolog, exon junction complex subunit IEA KEGG hsa:03040 NCBI chr 1:53,226,900...53,238,518
Ensembl chr 1:53,226,900...53,238,518
JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr12:10,599,524...10,613,609
Ensembl chr12:10,604,190...10,613,609
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 TAS RGD PMID:23498935 RGD:9686382 NCBI chr 3:152,243,632...152,465,780
Ensembl chr 3:152,243,828...152,465,780
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 IEA KEGG hsa:03040 NCBI chr 9:97,633,821...97,673,748
Ensembl chr 9:97,633,668...97,673,748
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 IEA KEGG hsa:03040 NCBI chr 3:196,935,406...196,942,528
Ensembl chr 3:196,935,402...196,942,594
JBrowse link
G PCBP1 poly(rC) binding protein 1 IEA KEGG hsa:03040 NCBI chr 2:70,087,477...70,089,203
Ensembl chr 2:70,087,477...70,089,203
JBrowse link
G PHF5A PHD finger protein 5A IEA KEGG hsa:03040 NCBI chr22:41,459,717...41,468,692
Ensembl chr22:41,459,717...41,468,692
JBrowse link
G PLRG1 pleiotropic regulator 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 4:154,535,005...154,550,400
Ensembl chr 4:154,535,005...154,550,400
JBrowse link
G PNN pinin, desmosome associated protein TAS RGD PMID:15145352 RGD:9686404 NCBI chr14:39,175,254...39,183,220
Ensembl chr14:39,175,183...39,183,220
JBrowse link
G PPIE peptidylprolyl isomerase E IEA
TAS
KEGG
RGD
PMID:18544344 PMID:23742842 hsa:03040, RGD:9686376, RGD:9686094 NCBI chr 1:39,738,882...39,763,914
Ensembl chr 1:39,692,182...39,763,914
JBrowse link
G PPIG peptidylprolyl isomerase G TAS RGD PMID:18544344 RGD:9686376 NCBI chr 2:169,584,351...169,641,406
Ensembl chr 2:169,584,342...169,641,406
JBrowse link
G PPIH peptidylprolyl isomerase H IEA
TAS
KEGG
RGD
PMID:18544344 hsa:03040, RGD:9686376 NCBI chr 1:42,658,423...42,681,654
Ensembl chr 1:42,658,335...42,676,758
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 IEA
TAS
KEGG
RGD
PMID:18544344 PMID:23742842 hsa:03040, RGD:9686376, RGD:9686094 NCBI chr 6:36,854,829...36,874,803
Ensembl chr 6:36,854,827...36,874,803
JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 TAS RGD PMID:18544344 RGD:9686376 NCBI chr22:21,666,012...21,700,015
Ensembl chr22:21,666,000...21,700,015
JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 TAS RGD PMID:18544344 RGD:9686376 NCBI chr 2:200,870,907...200,889,291
Ensembl chr 2:200,870,907...200,889,303
JBrowse link
G PQBP1 polyglutamine binding protein 1 IEA KEGG hsa:03040 NCBI chr  X:48,897,930...48,903,143
Ensembl chr  X:48,890,197...48,903,402
JBrowse link
G PRPF18 pre-mRNA processing factor 18 IEA
TAS
KEGG
RGD
PMID:24452469 hsa:03040, RGD:9686092 NCBI chr10:13,586,965...13,655,929
Ensembl chr10:13,586,939...13,668,445
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr11:60,890,547...60,906,585
Ensembl chr11:60,890,547...60,906,585
JBrowse link
G PRPF3 pre-mRNA processing factor 3 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr 1:150,321,468...150,353,233
Ensembl chr 1:150,321,479...150,353,233
JBrowse link
G PRPF31 pre-mRNA processing factor 31 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719
JBrowse link
G PRPF38A pre-mRNA processing factor 38A IEA KEGG hsa:03040 NCBI chr 1:52,404,602...52,420,836
Ensembl chr 1:52,404,602...52,420,836
JBrowse link
G PRPF38B pre-mRNA processing factor 38B IEA KEGG hsa:03040 NCBI chr 1:108,692,310...108,702,928
Ensembl chr 1:108,692,310...108,702,928
JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr 9:113,275,658...113,292,905
Ensembl chr 9:113,275,642...113,294,009
JBrowse link
G PRPF40A pre-mRNA processing factor 40 homolog A IEA KEGG hsa:03040 NCBI chr 2:152,651,732...152,718,019
Ensembl chr 2:152,651,593...152,718,012
JBrowse link
G PRPF40B pre-mRNA processing factor 40 homolog B IEA KEGG hsa:03040 NCBI chr12:49,622,646...49,644,665
Ensembl chr12:49,568,218...49,644,666
JBrowse link
G PRPF6 pre-mRNA processing factor 6 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr20:63,981,132...64,033,100
Ensembl chr20:63,981,132...64,033,100
JBrowse link
G PRPF8 pre-mRNA processing factor 8 IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr17:1,650,629...1,684,867
Ensembl chr17:1,650,629...1,684,867
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 TAS RGD PMID:23385723 RGD:9686381 NCBI chr19:797,452...812,312
Ensembl chr19:797,075...812,327
JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 TAS RGD PMID:23498935 RGD:9686382 NCBI chr 1:96,721,784...96,823,739
Ensembl chr 1:96,721,665...96,823,738
JBrowse link
G PUF60 poly(U) binding splicing factor 60 IEA KEGG hsa:03040 NCBI chr 8:143,816,344...143,829,315
Ensembl chr 8:143,816,344...143,830,709
JBrowse link
G QKI QKI, KH domain containing RNA binding TAS RGD PMID:23385723 RGD:9686381 NCBI chr 6:163,414,718...163,578,592
Ensembl chr 6:163,414,000...163,578,592
JBrowse link
G RBM17 RNA binding motif protein 17 IEA KEGG hsa:03040 NCBI chr10:6,089,034...6,117,447
Ensembl chr10:6,089,034...6,117,457
JBrowse link
G RBM22 RNA binding motif protein 22 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 5:150,690,792...150,701,062
Ensembl chr 5:150,690,792...150,701,077
JBrowse link
G RBM25 RNA binding motif protein 25 IEA KEGG hsa:03040 NCBI chr14:73,058,534...73,123,899
Ensembl chr14:73,058,532...73,123,899
JBrowse link
G RBM8A RNA binding motif protein 8A IEA
TAS
KEGG
RGD
PMID:15145352 hsa:03040, RGD:9686404 NCBI chr 1:145,921,556...145,927,484
Ensembl chr 1:145,921,556...145,927,678
JBrowse link
G RBMX RNA binding motif protein X-linked IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr  X:136,869,192...136,880,725
Ensembl chr  X:136,848,004...136,880,764
JBrowse link
G RBMXL1 RBMX like 1 IEA KEGG hsa:03040 NCBI chr 1:88,979,456...88,992,629
Ensembl chr 1:88,979,456...88,992,960
JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 TAS RGD PMID:15145352 RGD:9686404 NCBI chr16:2,253,116...2,268,126
Ensembl chr16:2,253,116...2,268,397
JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG hsa:03040 NCBI chr11:65,961,734...65,980,137
Ensembl chr11:65,961,728...65,980,137
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein TAS RGD PMID:23592432 RGD:9686090 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400
JBrowse link
G SF1 splicing factor 1 TAS RGD PMID:19239890 RGD:9686089 NCBI chr11:64,764,606...64,778,542
Ensembl chr11:64,764,606...64,778,786
JBrowse link
G SF3A1 splicing factor 3a subunit 1 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr22:30,331,988...30,356,894
Ensembl chr22:30,331,988...30,356,919
JBrowse link
G SF3A2 splicing factor 3a subunit 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr19:2,236,824...2,248,655
Ensembl chr19:2,236,824...2,248,655
JBrowse link
G SF3A3 splicing factor 3a subunit 3 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 1:37,956,975...37,990,022
Ensembl chr 1:37,956,975...37,990,075
JBrowse link
G SF3B1 splicing factor 3b subunit 1 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,079
JBrowse link
G SF3B2 splicing factor 3b subunit 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr11:66,052,364...66,069,308
Ensembl chr11:66,050,729...66,069,308
JBrowse link
G SF3B3 splicing factor 3b subunit 3 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr16:70,523,816...70,577,668
Ensembl chr16:70,523,791...70,577,670
JBrowse link
G SF3B4 splicing factor 3b subunit 4 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 1:149,923,317...149,927,803
Ensembl chr 1:149,923,317...149,927,803
JBrowse link
G SF3B5 splicing factor 3b subunit 5 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 6:144,094,884...144,095,573
Ensembl chr 6:144,094,884...144,095,573
JBrowse link
G SF3B6 splicing factor 3b subunit 6 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr 2:24,067,586...24,076,326
Ensembl chr 2:24,067,586...24,076,373
JBrowse link
G SLU7 SLU7 homolog, splicing factor IEA
TAS
KEGG
RGD
PMID:24452469 hsa:03040, RGD:9686092 NCBI chr 5:160,401,641...160,419,081
Ensembl chr 5:160,401,641...160,421,711
JBrowse link
G SMNDC1 survival motor neuron domain containing 1 IEA KEGG hsa:03040 NCBI chr10:110,290,730...110,304,920
Ensembl chr10:110,290,730...110,304,938
JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 IEA
TAS
KEGG
RGD
PMID:23454554 PMID:23592432 hsa:03040, RGD:9686093, RGD:9686090 NCBI chr 2:96,274,338...96,305,546
Ensembl chr 2:96,274,338...96,321,271
JBrowse link
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG hsa:03040 NCBI chr 2:69,893,956...69,905,236
Ensembl chr 2:69,893,956...69,905,575
JBrowse link
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG hsa:03040 NCBI chr 1:31,259,568...31,296,788
Ensembl chr 1:31,259,568...31,296,788
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr19:49,085,451...49,108,604
Ensembl chr19:49,085,419...49,108,605
JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr19:40,751,203...40,765,389
Ensembl chr19:40,750,637...40,765,389
JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr15:101,281,510...101,295,248
Ensembl chr15:101,281,510...101,295,282
JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853
JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr20:16,730,026...16,742,564
Ensembl chr20:16,729,961...16,742,564
JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C IEA
TAS
KEGG
RGD
PMID:23592432 hsa:03040, RGD:9686090 NCBI chr 6:34,757,505...34,773,857
Ensembl chr 6:34,757,505...34,773,857
JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524
JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569
JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052
JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152
JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828
JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740
JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504
JBrowse link
G SNW1 SNW domain containing 1 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr14:77,717,599...77,761,156
Ensembl chr14:77,717,599...77,761,207
JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 TAS RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 1:24,643,302...24,673,281
Ensembl chr 1:24,631,716...24,673,281
JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 TAS RGD PMID:17537823 RGD:9686091 NCBI chr16:2,752,638...2,771,412
Ensembl chr16:2,752,626...2,772,538
JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 TAS RGD PMID:23498935 RGD:9686382 NCBI chr12:118,981,541...119,163,051
Ensembl chr12:118,981,541...119,163,051
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr17:57,989,038...58,007,246
Ensembl chr17:58,000,919...58,007,346
JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:23,964,347...23,980,327
Ensembl chr 1:23,964,347...23,980,927
JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 1:70,205,696...70,253,052
Ensembl chr 1:70,205,682...70,253,052
JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 TAS RGD PMID:17537823 RGD:9686091 NCBI chr 6:89,095,959...89,118,071
Ensembl chr 6:89,093,949...89,118,071
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 IEA
TAS
KEGG
RGD
PMID:17537823 hsa:03040, RGD:9686091 NCBI chr17:76,734,115...76,737,411
Ensembl chr17:76,734,115...76,737,333
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 6:36,594,362...36,605,600
Ensembl chr 6:36,594,353...36,605,911
JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 1:29,147,743...29,181,900
Ensembl chr 1:29,147,743...29,181,900
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr14:69,767,142...69,772,005
Ensembl chr14:69,726,900...69,772,005
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr20:43,457,896...43,464,243
Ensembl chr20:43,457,893...43,466,046
JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr 2:38,743,599...38,751,494
Ensembl chr 2:38,743,599...38,751,494
JBrowse link
G SRSF8 serine and arginine rich splicing factor 8 IEA KEGG hsa:03040 NCBI chr11:95,066,877...95,071,225
Ensembl chr11:95,066,919...95,071,225
JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 IEA
TAS
KEGG
RGD
PMID:17537823 PMID:19239890 hsa:03040, RGD:9686091, RGD:9686089 NCBI chr12:120,461,672...120,469,748
Ensembl chr12:120,461,672...120,495,946
JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr 1:25,222,276...25,232,502
Ensembl chr 1:25,222,276...25,232,502
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein TAS RGD PMID:17537823 RGD:9686091 NCBI chr 6:85,607,784...85,643,870
Ensembl chr 6:85,607,779...85,644,063
JBrowse link
G TCERG1 transcription elongation regulator 1 IEA KEGG hsa:03040 NCBI chr 5:146,447,330...146,511,961
Ensembl chr 5:146,447,311...146,511,961
JBrowse link
G THOC1 THO complex subunit 1 IEA KEGG hsa:03040 NCBI chr18:214,520...268,047
Ensembl chr18:214,520...268,050
JBrowse link
G THOC2 THO complex subunit 2 IEA KEGG hsa:03040 NCBI chr  X:123,600,569...123,733,052
Ensembl chr  X:123,600,561...123,733,056
JBrowse link
G THOC3 THO complex subunit 3 IEA KEGG hsa:03040 NCBI chr 5:175,959,531...175,968,315
Ensembl chr 5:175,917,873...176,034,680
JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 TAS RGD PMID:23385723 RGD:9686381 NCBI chr10:119,573,465...119,596,964
Ensembl chr10:119,571,802...119,597,029
JBrowse link
G TRA2A transformer 2 alpha homolog IEA KEGG hsa:03040 NCBI chr 7:23,504,780...23,531,981
Ensembl chr 7:23,504,780...23,532,041
JBrowse link
G TRA2B transformer 2 beta homolog IEA KEGG hsa:03040 NCBI chr 3:185,914,558...185,938,014
Ensembl chr 3:185,914,558...185,938,103
JBrowse link
G TXNL4A thioredoxin like 4A IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr18:79,970,813...80,033,936
Ensembl chr18:79,970,813...80,033,949
JBrowse link
G U2AF1 U2 small nuclear RNA auxiliary factor 1 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr21:43,092,956...43,107,578
Ensembl chr21:43,092,956...43,107,570
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 IEA
TAS
KEGG
RGD
PMID:19239890 hsa:03040, RGD:9686089 NCBI chr19:55,655,035...55,674,716
Ensembl chr19:55,654,146...55,674,716
JBrowse link
G U2SURP U2 snRNP associated SURP domain containing IEA KEGG hsa:03040 NCBI chr 3:143,001,570...143,060,725
Ensembl chr 3:142,964,497...143,060,725
JBrowse link
G USP39 ubiquitin specific peptidase 39 IEA KEGG hsa:03040 NCBI chr 2:85,602,861...85,649,283
Ensembl chr 2:85,602,856...85,649,283
JBrowse link
G WBP11 WW domain binding protein 11 IEA KEGG hsa:03040 NCBI chr12:14,784,582...14,803,478
Ensembl chr12:14,784,582...14,803,486
JBrowse link
G XAB2 XPA binding protein 2 IEA
TAS
KEGG
RGD
PMID:23742842 hsa:03040, RGD:9686094 NCBI chr19:7,619,525...7,629,545
Ensembl chr19:7,619,525...7,629,545
JBrowse link
G ZMAT2 zinc finger matrin-type 2 IEA KEGG hsa:03040 NCBI chr 5:140,700,447...140,706,686
Ensembl chr 5:140,698,680...140,706,686
JBrowse link
tRNA maturation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 TAS RGD PMID:25071838 RGD:9685342 NCBI chr11:57,657,762...57,661,865
Ensembl chr11:57,648,188...57,661,865
JBrowse link
G ELAC1 elaC ribonuclease Z 1 TAS RGD PMID:21572561 RGD:9685334 NCBI chr18:50,968,040...50,988,121
Ensembl chr18:50,967,991...50,988,121
JBrowse link
G ELAC2 elaC ribonuclease Z 2 TAS RGD PMID:21572561 RGD:9685334 NCBI chr17:12,991,612...13,018,027
Ensembl chr17:12,991,612...13,018,065
JBrowse link
G POP1 POP1 homolog, ribonuclease P/MRP subunit TAS RGD PMID:19931535 RGD:9685326 NCBI chr 8:98,117,293...98,159,835
Ensembl chr 8:98,117,293...98,159,835
JBrowse link
G POP4 POP4 homolog, ribonuclease P/MRP subunit TAS RGD PMID:19931535 RGD:9685326 NCBI chr19:29,606,283...29,617,237
Ensembl chr19:29,606,283...29,617,237
JBrowse link
G POP5 POP5 homolog, ribonuclease P/MRP subunit TAS RGD PMID:19931535 RGD:9685326 NCBI chr12:120,578,764...120,581,402
Ensembl chr12:120,578,764...120,581,402
JBrowse link
G POP7 POP7 homolog, ribonuclease P/MRP subunit TAS RGD PMID:19931535 RGD:9685326 NCBI chr 7:100,706,121...100,707,486
Ensembl chr 7:100,706,121...100,707,486
JBrowse link
G RPP14 ribonuclease P/MRP subunit p14 TAS RGD PMID:19931535 RGD:9685326 NCBI chr 3:58,306,245...58,320,193
Ensembl chr 3:58,306,245...58,324,695
JBrowse link
G RPP21 ribonuclease P/MRP subunit p21 TAS RGD PMID:19931535 RGD:9685326 NCBI chr 6:30,345,156...30,346,857
Ensembl chr 6:30,345,131...30,346,884
JBrowse link
G RPP25 ribonuclease P and MRP subunit p25 TAS RGD PMID:19931535 RGD:9685326 NCBI chr15:74,954,418...74,956,772
Ensembl chr15:74,954,418...74,956,772
JBrowse link
G RPP30 ribonuclease P/MRP subunit p30 TAS RGD PMID:19931535 RGD:9685326 NCBI chr10:90,871,974...90,908,556
Ensembl chr10:90,871,952...90,908,553
JBrowse link
G RPP38 ribonuclease P/MRP subunit p38 TAS RGD PMID:19931535 RGD:9685326 NCBI chr10:15,097,355...15,104,257
Ensembl chr10:15,097,180...15,139,818
JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 TAS RGD PMID:19931535 RGD:9685326 NCBI chr 6:4,988,426...5,004,037
Ensembl chr 6:4,994,717...5,004,063
JBrowse link
G RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase TAS RGD PMID:25071838 RGD:9685342 NCBI chr22:32,387,582...32,412,247
Ensembl chr22:32,387,582...32,412,248
JBrowse link
G SSB small RNA binding exonuclease protection factor La TAS RGD PMID:21572561 RGD:9685334 NCBI chr 2:169,798,871...169,812,064
Ensembl chr 2:169,791,933...169,812,064
JBrowse link
G TSEN15 tRNA splicing endonuclease subunit 15 TAS RGD PMID:25071838 RGD:9685342 NCBI chr 1:184,051,730...184,097,485
Ensembl chr 1:184,051,651...184,123,978
JBrowse link
G TSEN2 tRNA splicing endonuclease subunit 2 TAS RGD PMID:25071838 RGD:9685342 NCBI chr 3:12,480,231...12,539,624
Ensembl chr 3:12,484,421...12,541,549
JBrowse link
G TSEN34 tRNA splicing endonuclease subunit 34 TAS RGD PMID:25071838 RGD:9685342 NCBI chr19:54,189,441...54,194,532
Ensembl chr19:54,189,938...54,194,536
JBrowse link
G TSEN54 tRNA splicing endonuclease subunit 54 TAS RGD PMID:25071838 RGD:9685342 NCBI chr17:75,516,528...75,524,735
Ensembl chr17:75,515,944...75,524,735
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5957
    regulatory pathway 3600
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1637
        transcription pathway 1053
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway + 387
            prokaryotic RNA polymerase transcription pathway 0
paths to the root