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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:RNA polymerase transcription pathway
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Accession:PW:0001272 term browser browse the term
Definition:The pathway of DNA transcription carried out by the prokaryotic and the several eukaryotic polymerases.

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3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:15,568,984...15,573,849
Ensembl chr 1:15,568,976...15,573,082 		JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:138,602,549...138,618,802
Ensembl chr 8:138,602,835...138,617,071 		JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr24:69,873,056...69,914,129
Ensembl chr24:69,877,446...69,917,541 		JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:98,174,022...98,226,486
Ensembl chr14:98,173,117...98,226,907 		JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr28:13,708,239...13,726,502
Ensembl chr28:13,708,247...13,726,492 		JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:64,859,701...64,894,144
Ensembl chr11:64,859,718...64,882,269 		JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:12,417,452...12,445,984
Ensembl chr 1:12,417,490...12,446,527 		JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:7,717,974...7,729,974
Ensembl chr 2:7,715,595...7,726,770 		JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:89,154,895...89,180,783
Ensembl chr  X:89,155,771...89,183,551 		JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:32,083,831...32,106,704 JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:40,049,679...40,052,114
Ensembl chr17:40,050,257...40,052,050 		JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:15,072,962...15,147,216
Ensembl chr 7:15,069,470...15,147,178 		JBrowse link
G LOC103231469 polyadenylate-binding protein 2 ISO RGD PMID:24243805 RGD:9681742 NCBI chr29:23,692,252...23,697,882
Ensembl chr29:23,679,736...23,686,349
Ensembl chr29:23,679,736...23,686,349 		JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 5:42,340,717...42,360,844
Ensembl chr 5:42,337,873...42,360,817 		JBrowse link
G PAPOLA poly(A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr24:74,388,643...74,452,368
Ensembl chr24:74,388,612...74,453,162 		JBrowse link
G PAPOLB poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr28:16,788,585...16,790,623 JBrowse link
G PAPOLG poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:46,193,350...46,237,078
Ensembl chr14:46,189,698...46,237,059 		JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:74,350,577...74,379,284
Ensembl chr 1:74,350,609...74,378,374 		JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:39,264,850...39,308,912
Ensembl chr 6:39,264,802...39,308,812 		JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:2,406,083...2,511,966
Ensembl chr10:2,406,100...2,515,016 		JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 2:50,287,718...50,373,869
Ensembl chr 2:50,288,073...50,373,883 		JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr12:41,736,063...41,776,178
Ensembl chr12:41,738,579...41,776,509 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr15:90,306,640...90,314,293
Ensembl chr15:90,306,640...90,313,019 		JBrowse link
G RAMAC RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr29:2,652,843...2,667,718 JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr13:13,053,741...13,386,479
Ensembl chr13:13,053,405...13,386,481 		JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:72,203,405...72,242,527
Ensembl chr18:72,208,648...72,243,940 		JBrowse link
RNA polymerase I transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAVIN1 caveolae associated protein 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr16:63,840,693...63,863,162
Ensembl chr16:63,840,859...63,863,296 		JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr25:36,167,482...36,302,918
Ensembl chr25:36,170,134...36,302,812 		JBrowse link
G CREBBP CREB binding protein ISO RGD PMID:24022641 RGD:9588250 NCBI chr 5:3,415,548...3,570,030
Ensembl chr 5:3,415,412...3,540,943 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:54,047,922...54,077,049
Ensembl chr 1:54,047,886...54,077,338 		JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:31,405,019...31,444,350
Ensembl chr26:31,404,537...31,445,198 		JBrowse link
G NCL nucleolin ISO RGD PMID:21893173 PMID:25225127 RGD:9588244 RGD:9588251 NCBI chr10:117,478,279...117,487,810 JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 6:33,990,552...33,996,673
Ensembl chr 6:33,986,916...33,996,347 		JBrowse link
G POLR1A RNA polymerase I subunit A ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr14:21,050,526...21,127,010
Ensembl chr14:21,050,799...21,125,990 		JBrowse link
G POLR1B RNA polymerase I subunit B ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr14:15,549,963...15,585,947
Ensembl chr14:15,550,254...15,584,521 		JBrowse link
G POLR1C RNA polymerase I and III subunit C ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr17:28,637,868...28,649,898 JBrowse link
G POLR1D RNA polymerase I and III subunit D ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 3:6,773,426...6,819,045 JBrowse link
G POLR1E RNA polymerase I subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr12:43,082,707...43,101,416
Ensembl chr12:43,083,197...43,108,367 		JBrowse link
G POLR1F RNA polymerase I subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr21:38,488,802...38,501,106
Ensembl chr21:38,488,825...38,501,158 		JBrowse link
G POLR1G RNA polymerase I subunit G ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 6:38,853,681...38,857,241
Ensembl chr 6:38,853,874...38,859,288 		JBrowse link
G POLR1H RNA polymerase I subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr17:42,434,992...42,438,993
Ensembl chr17:42,435,196...42,438,981 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 6:844,196...856,127
Ensembl chr 6:841,615...855,214 		JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr19:20,654,464...20,668,267
Ensembl chr19:20,654,239...20,669,872 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr15:5,051,705...5,056,497
Ensembl chr15:5,051,712...5,056,413 		JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 8:95,001,525...95,004,749
Ensembl chr 8:95,001,587...95,004,346 		JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 1:646,747...649,196
Ensembl chr 1:646,748...649,029 		JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 5:14,235,368...14,271,790
Ensembl chr 5:14,235,414...14,272,020 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:41,523,610...41,589,014
Ensembl chr26:41,522,542...41,588,948 		JBrowse link
G SIRT1 sirtuin 1 ISO RGD PMID:24022641 RGD:9588250 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT7 sirtuin 7 ISO RGD PMID:24022641 RGD:9588250 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:5,037,386...5,062,578
Ensembl chr26:5,037,443...5,053,707 		JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:21454601 RGD:9588245 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:21454601 RGD:9588245 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923 		JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr16:35,047,874...35,054,438
Ensembl chr16:35,047,934...35,054,239 		JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr 6:34,052,587...34,086,022
Ensembl chr 6:34,052,577...34,085,782 		JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr20:104,164,912...104,199,925
Ensembl chr20:104,164,907...104,200,272 		JBrowse link
G TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr25:6,982,714...7,014,699
Ensembl chr25:6,982,784...7,014,877 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr14:97,704,251...97,787,738
Ensembl chr14:97,704,187...97,787,639 		JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 5:69,587,592...69,596,312
Ensembl chr 5:69,587,769...69,593,814 		JBrowse link
G TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 1:84,982,364...84,993,601
Ensembl chr 1:84,988,280...84,994,290 		JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TTF1 transcription termination factor 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr12:5,734,136...5,763,768
Ensembl chr12:5,738,166...5,764,533 		JBrowse link
G UBTF upstream binding transcription factor ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr16:62,168,288...62,184,902
Ensembl chr16:62,171,666...62,182,320 		JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 7:35,309,172...35,516,777
Ensembl chr 7:35,380,578...35,511,446 		JBrowse link
G AFF4 ALF transcription elongation factor 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr23:35,693,427...35,782,746
Ensembl chr23:35,699,094...35,782,683 		JBrowse link
G CCNK cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr24:77,436,569...77,466,703
Ensembl chr24:77,436,479...77,467,322 		JBrowse link
G CCNT1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr11:44,932,774...44,966,412
Ensembl chr11:44,937,350...44,966,018 		JBrowse link
G CCNT2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr10:19,145,163...19,183,777
Ensembl chr10:19,145,161...19,180,917 		JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr25:36,167,482...36,302,918
Ensembl chr25:36,170,134...36,302,812 		JBrowse link
G CDK9 cyclin dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:54,047,922...54,077,049
Ensembl chr 1:54,047,886...54,077,338 		JBrowse link
G EAF1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr15:60,261,013...60,277,177
Ensembl chr15:60,260,967...60,277,626 		JBrowse link
G EAF2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr22:58,966,640...59,025,158
Ensembl chr22:58,974,409...59,025,143 		JBrowse link
G ELL elongation factor for RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr 6:16,915,878...17,000,275
Ensembl chr 6:16,917,953...17,000,230 		JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 4:89,758,483...89,835,773
Ensembl chr 4:89,762,251...89,835,433 		JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr26:39,268,461...39,273,833
Ensembl chr26:39,269,538...39,273,321 		JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:5,996,585...6,006,893 JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:23,195,682...23,380,628
Ensembl chr 3:23,212,334...23,384,036 		JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:31,405,019...31,444,350
Ensembl chr26:31,404,537...31,445,198 		JBrowse link
G MLLT1 MLLT1 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 6:5,835,483...5,913,096
Ensembl chr 6:5,834,660...5,913,119 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr12:41,736,063...41,776,178
Ensembl chr12:41,738,579...41,776,509 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr15:90,306,640...90,314,293
Ensembl chr15:90,306,640...90,313,019 		JBrowse link
G NELFA negative elongation factor complex member A ISO RGD PMID:24050178 RGD:9681735 NCBI chr27:46,759,742...46,786,835
Ensembl chr27:46,760,707...46,787,090 		JBrowse link
G NELFB negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:914,384...933,921 JBrowse link
G NELFCD negative elongation factor complex member C/D ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:5,146,137...5,159,965
Ensembl chr 2:5,146,575...5,159,883 		JBrowse link
G NELFE negative elongation factor complex member E ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:40,063,298...40,069,714
Ensembl chr17:40,063,755...40,198,451 		JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 6:33,990,552...33,996,673
Ensembl chr 6:33,986,916...33,996,347 		JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr13:13,053,741...13,386,479
Ensembl chr13:13,053,405...13,386,481 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:41,523,610...41,589,014
Ensembl chr26:41,522,542...41,588,948 		JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr26:5,037,386...5,062,578
Ensembl chr26:5,037,443...5,053,707 		JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923 		JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr16:35,047,874...35,054,438
Ensembl chr16:35,047,934...35,054,239 		JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:34,052,587...34,086,022
Ensembl chr 6:34,052,577...34,085,782 		JBrowse link
G TCEA1 transcription elongation factor A1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 8:50,048,771...50,104,189
Ensembl chr 8:50,048,474...50,104,130 		JBrowse link
G TCEA2 transcription elongation factor A2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:174,158...184,237
Ensembl chr 2:174,134...182,943 		JBrowse link
G TCEA3 transcription elongation factor A3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr20:109,251,247...109,294,071 JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr22:24,897,045...25,046,188
Ensembl chr22:24,945,248...25,033,687 		JBrowse link
G ATXN7L3 ataxin 7 like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr16:62,190,520...62,198,363
Ensembl chr16:62,191,981...62,195,891 		JBrowse link
G CCNH cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr 4:81,373,812...81,392,454
Ensembl chr 4:81,373,994...81,392,326 		JBrowse link
G CDK7 cyclin dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 4:65,329,490...65,375,269
Ensembl chr 4:65,329,585...65,374,989 		JBrowse link
G DR1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr20:39,873,024...39,890,090
Ensembl chr20:39,870,814...39,890,106 		JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 8:104,044,671...104,054,272
Ensembl chr 8:104,044,634...104,056,953 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO RGD PMID:21592869 RGD:9681726 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr24:58,506,888...58,552,587
Ensembl chr24:58,506,537...58,551,069 		JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr26:23,850,483...23,868,477 JBrowse link
G GTF2B general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr20:44,527,150...44,566,398
Ensembl chr20:44,527,599...44,566,424 		JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr22:60,057,393...60,094,926
Ensembl chr22:60,056,720...60,094,835 		JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 8:28,690,056...28,772,470 JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 6:5,996,585...6,006,893 JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 3:23,195,682...23,380,628
Ensembl chr 3:23,212,334...23,384,036 		JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:46,573,907...46,620,443
Ensembl chr 1:46,573,393...46,609,261 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 4:65,650,735...65,682,004 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr11:118,961,907...118,989,906
Ensembl chr11:118,967,974...118,989,391 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr17:41,550,167...41,556,538
Ensembl chr17:41,550,287...41,556,054 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 ISO RGD PMID:21592869 RGD:9681726 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G HCFC2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:99,264,638...99,303,923
Ensembl chr11:99,264,674...99,303,732 		JBrowse link
G KAT14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:47,207,964...47,253,813
Ensembl chr 2:47,203,676...47,254,318 		JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr16:64,146,146...64,154,726
Ensembl chr16:64,146,207...64,154,252 		JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr15:64,769,590...64,885,536
Ensembl chr15:64,770,185...64,886,219 		JBrowse link
G MBIP MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr24:13,100,914...13,123,017
Ensembl chr24:13,102,520...13,122,977 		JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase ISO RGD PMID:21592869 RGD:9681726 NCBI chr24:37,922,347...38,161,467
Ensembl chr24:37,922,353...38,162,226 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:26,162,934...26,164,931
Ensembl chr12:26,163,107...26,165,214 		JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:26,399,760...26,439,616
Ensembl chr 5:26,399,677...26,439,530 		JBrowse link
G SUPT20H SPT20 homolog, SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:15,529,023...15,578,330
Ensembl chr 3:15,529,378...15,578,293 		JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:26,849,199...27,417,306 JBrowse link
G SUPT7L SPT7 like, STAGA complex subunit gamma ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:79,965,583...79,977,693
Ensembl chr14:79,966,684...79,980,864 		JBrowse link
G TADA1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr25:62,155,931...62,176,022
Ensembl chr25:62,155,982...62,177,657 		JBrowse link
G TADA2A transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr16:30,303,858...30,374,104
Ensembl chr16:30,300,532...30,374,078 		JBrowse link
G TADA2B transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr27:43,157,292...43,170,970
Ensembl chr27:43,157,389...43,168,664 		JBrowse link
G TADA3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr22:45,787,945...45,799,529
Ensembl chr22:45,786,012...45,798,019 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 1:58,213,261...58,214,658
Ensembl chr 1:58,213,310...58,214,581 		JBrowse link
G TAF11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:37,230,382...37,241,574 JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr20:104,164,912...104,199,925
Ensembl chr20:104,164,907...104,200,272 		JBrowse link
G TAF13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr20:24,505,023...24,516,018
Ensembl chr20:24,463,961...24,517,642 		JBrowse link
G TAF15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr16:29,284,769...29,322,601
Ensembl chr16:29,284,770...29,322,703 		JBrowse link
G TAF2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 8:114,291,325...114,395,189
Ensembl chr 8:114,290,866...114,395,537 		JBrowse link
G TAF3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 9:7,865,433...8,063,932
Ensembl chr 9:7,865,519...8,063,923 		JBrowse link
G TAF4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:2,167,585...2,252,383
Ensembl chr 2:2,167,341...2,252,156 		JBrowse link
G TAF5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 9:96,411,690...96,432,668 JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr25:66,859,264...66,892,877
Ensembl chr25:66,858,911...66,881,081 		JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr28:12,958,555...12,971,100
Ensembl chr28:12,963,609...12,973,368 		JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:11,115,862...11,138,703
Ensembl chr 1:11,115,907...11,138,739 		JBrowse link
G TAF7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr23:43,938,202...43,940,486
Ensembl chr23:43,938,714...43,939,763 		JBrowse link
G TAF8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:30,065,086...30,105,653 JBrowse link
G TAF9 TATA-box binding protein associated factor 9 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 4:65,451,038...65,455,896 JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:23146842 PMID:24120742 RGD:9681721 RGD:9681723 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TRRAP transformation/transcription domain associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr28:14,154,962...14,289,110
Ensembl chr28:14,154,960...14,286,512 		JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr16:19,110,710...19,151,565
Ensembl chr16:19,107,508...19,151,603 		JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:3,982,998...4,007,605
Ensembl chr12:3,983,013...4,007,119 		JBrowse link
G YEATS2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr15:5,607,788...5,716,245
Ensembl chr15:5,608,775...5,700,620 		JBrowse link
G ZZZ3 zinc finger ZZ-type containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr20:55,493,316...55,613,263
Ensembl chr20:55,537,143...55,612,122 		JBrowse link
RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNC cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:74,312,485...74,338,843
Ensembl chr13:74,312,228...74,339,369 		JBrowse link
G CDC14A cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr20:32,822,748...32,987,739
Ensembl chr20:32,822,746...32,986,718 		JBrowse link
G CDC14B cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr12:106,520,152...106,645,468
Ensembl chr12:106,572,015...106,633,316 		JBrowse link
G CDK12 cyclin dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr16:66,612,238...66,709,437
Ensembl chr16:66,623,785...66,708,755 		JBrowse link
G CDK19 cyclin dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:63,069,270...63,294,012
Ensembl chr13:63,069,864...63,293,998 		JBrowse link
G CDK7 cyclin dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 4:65,329,490...65,375,269
Ensembl chr 4:65,329,585...65,374,989 		JBrowse link
G CDK8 cyclin dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 PMID:24088064 RGD:9681732 RGD:9681737 RGD:9681738 NCBI chr 3:5,505,532...5,652,527
Ensembl chr 3:5,505,625...5,651,366 		JBrowse link
G CDK9 cyclin dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G CTDP1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr18:479,476...549,546
Ensembl chr18:478,543...544,258 		JBrowse link
G CTDSP1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr10:104,291,494...104,298,982
Ensembl chr10:104,293,073...104,299,258 		JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MED10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:6,058,380...6,064,916
Ensembl chr 4:6,057,955...6,064,901 		JBrowse link
G MED11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:4,211,592...4,213,639
Ensembl chr16:4,211,692...4,213,232 		JBrowse link
G MED12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:60,915,796...60,939,220
Ensembl chr  X:60,915,703...60,937,677 		JBrowse link
G MED12L mediator complex subunit 12L ISO RGD PMID:24088064 RGD:9681732 NCBI chr15:39,265,167...39,606,163
Ensembl chr15:39,268,991...39,605,326 		JBrowse link
G MED13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:33,163,032...33,285,385
Ensembl chr16:33,162,852...33,285,445 		JBrowse link
G MED13L mediator complex subunit 13L ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:111,245,201...111,563,485
Ensembl chr11:111,243,753...111,563,663 		JBrowse link
G MED14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:37,810,996...37,898,114
Ensembl chr  X:37,810,710...37,897,929 		JBrowse link
G MED15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 NCBI chr19:5,111,512...5,195,677
Ensembl chr19:5,112,435...5,167,139 		JBrowse link
G MED16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:617,998...638,340 JBrowse link
G MED17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:85,031,407...85,060,562
Ensembl chr 1:85,031,716...85,059,285 		JBrowse link
G MED18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr20:104,468,426...104,475,411
Ensembl chr20:104,467,782...104,475,438 		JBrowse link
G MED19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:15,515,874...15,524,663
Ensembl chr 1:15,515,814...15,525,085 		JBrowse link
G MED20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:30,241,772...30,256,867
Ensembl chr17:30,247,752...30,255,127 		JBrowse link
G MED21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:26,773,113...26,780,667
Ensembl chr11:26,773,085...26,782,274 		JBrowse link
G MED22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:4,787,771...4,794,942
Ensembl chr12:4,789,061...4,795,011 		JBrowse link
G MED23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:41,927,266...41,969,120
Ensembl chr13:41,927,308...41,969,447 		JBrowse link
G MED24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:66,126,580...66,161,589
Ensembl chr16:66,127,548...66,161,585 		JBrowse link
G MED25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:42,979,616...42,994,901
Ensembl chr 6:42,979,674...42,994,865 		JBrowse link
G MED26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:15,082,453...15,136,412
Ensembl chr 6:15,080,808...15,136,291 		JBrowse link
G MED27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:6,062,604...6,281,039
Ensembl chr12:6,062,569...6,281,050 		JBrowse link
G MED28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr27:32,599,370...32,609,956
Ensembl chr27:32,600,058...32,609,941 		JBrowse link
G MED29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:33,996,745...34,005,208
Ensembl chr 6:33,996,843...34,002,405 		JBrowse link
G MED30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:112,162,112...112,181,630
Ensembl chr 8:112,162,149...112,181,585 		JBrowse link
G MED31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:6,019,668...6,027,112 JBrowse link
G MED4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:25,990,203...26,009,472
Ensembl chr 3:25,990,159...26,009,438 		JBrowse link
G MED6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr24:47,785,637...47,801,404
Ensembl chr24:47,781,875...47,801,361 		JBrowse link
G MED7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr23:59,529,997...59,534,476
Ensembl chr23:59,530,291...59,530,989 		JBrowse link
G MED8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr20:89,422,575...89,428,493
Ensembl chr20:89,422,622...89,446,938 		JBrowse link
G MED9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:16,513,144...16,527,880
Ensembl chr16:16,512,898...16,527,875 		JBrowse link
G POLR2A RNA polymerase II subunit A ISO RGD PMID:22960599 RGD:9588243 NCBI chr16:6,860,487...6,889,054
Ensembl chr16:6,860,677...6,888,618 		JBrowse link
G POLR2B RNA polymerase II subunit B ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:11,694,446...11,736,215
Ensembl chr 7:11,694,619...11,736,611 		JBrowse link
G POLR2C RNA polymerase II subunit C ISO RGD PMID:22960599 RGD:9588243 NCBI chr 5:43,394,294...43,403,981
Ensembl chr 5:43,394,498...43,403,490 		JBrowse link
G POLR2D RNA polymerase II subunit D ISO RGD PMID:22960599 RGD:9588243 NCBI chr10:2,361,957...2,372,343
Ensembl chr10:2,361,992...2,375,474 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:22960599 RGD:9588243 NCBI chr 6:844,196...856,127
Ensembl chr 6:841,615...855,214 		JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:20,654,464...20,668,267
Ensembl chr19:20,654,239...20,669,872 		JBrowse link
G POLR2G RNA polymerase II subunit G ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:11,140,897...11,150,879
Ensembl chr 1:11,140,867...11,150,882 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:22960599 RGD:9588243 NCBI chr15:5,051,705...5,056,497
Ensembl chr15:5,051,712...5,056,413 		JBrowse link
G POLR2I RNA polymerase II subunit I ISO RGD PMID:22960599 RGD:9588243 NCBI chr 6:31,020,107...31,021,717
Ensembl chr 6:31,020,151...31,021,237 		JBrowse link
G POLR2J RNA polymerase II subunit J ISO RGD PMID:22960599 RGD:9588243 NCBI chr28:10,742,636...10,748,084
Ensembl chr28:10,742,570...10,749,382 		JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:22960599 RGD:9588243 NCBI chr 8:95,001,525...95,004,749
Ensembl chr 8:95,001,587...95,004,346 		JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:646,747...649,196
Ensembl chr 1:646,748...649,029 		JBrowse link
G RPAP2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr20:40,863,401...40,950,981
Ensembl chr20:40,863,719...40,950,879 		JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr20:129,922,992...129,958,551
Ensembl chr20:129,923,091...129,958,712 		JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:15,568,984...15,573,849
Ensembl chr 1:15,568,976...15,573,082 		JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:138,602,549...138,618,802
Ensembl chr 8:138,602,835...138,617,071 		JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr24:69,873,056...69,914,129
Ensembl chr24:69,877,446...69,917,541 		JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:98,174,022...98,226,486
Ensembl chr14:98,173,117...98,226,907 		JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr28:13,708,239...13,726,502
Ensembl chr28:13,708,247...13,726,492 		JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:64,859,701...64,894,144
Ensembl chr11:64,859,718...64,882,269 		JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:12,417,452...12,445,984
Ensembl chr 1:12,417,490...12,446,527 		JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:7,717,974...7,729,974
Ensembl chr 2:7,715,595...7,726,770 		JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:89,154,895...89,180,783
Ensembl chr  X:89,155,771...89,183,551 		JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:32,083,831...32,106,704 JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:40,049,679...40,052,114
Ensembl chr17:40,050,257...40,052,050 		JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:15,072,962...15,147,216
Ensembl chr 7:15,069,470...15,147,178 		JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 5:42,340,717...42,360,844
Ensembl chr 5:42,337,873...42,360,817 		JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:74,350,577...74,379,284
Ensembl chr 1:74,350,609...74,378,374 		JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:39,264,850...39,308,912
Ensembl chr 6:39,264,802...39,308,812 		JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:2,406,083...2,511,966
Ensembl chr10:2,406,100...2,515,016 		JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 2:50,287,718...50,373,869
Ensembl chr 2:50,288,073...50,373,883 		JBrowse link
RNA polymerase III transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDP1 BDP1 general transcription factor IIIB subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr 4:65,815,105...65,925,928
Ensembl chr 4:65,814,993...65,914,253 		JBrowse link
G BRF1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr24:83,117,823...83,192,435
Ensembl chr24:83,117,685...83,192,431 		JBrowse link
G BRF2 BRF2 general transcription factor IIIB subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr 8:35,879,762...35,885,572
Ensembl chr 8:35,880,373...35,885,485 		JBrowse link
G CRCP CGRP receptor component ISO RGD PMID:12391170 RGD:9685217 NCBI chr28:1,826,194...1,864,642
Ensembl chr28:1,826,385...1,864,827 		JBrowse link
G GTF3A general transcription factor IIIA ISO RGD PMID:23031840 RGD:9588284 NCBI chr 3:6,601,557...6,611,806
Ensembl chr 3:6,601,571...6,611,713 		JBrowse link
G GTF3C1 general transcription factor IIIC subunit 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 5:25,165,672...25,252,370
Ensembl chr 5:25,165,539...25,252,346 		JBrowse link
G GTF3C2 general transcription factor IIIC subunit 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr14:80,256,994...80,286,419
Ensembl chr14:80,257,029...80,285,595 		JBrowse link
G GTF3C3 general transcription factor IIIC subunit 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr10:82,288,845...82,323,768
Ensembl chr10:82,287,880...82,323,716 		JBrowse link
G GTF3C4 general transcription factor IIIC subunit 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:5,447,644...5,468,043
Ensembl chr12:5,448,494...5,468,334 		JBrowse link
G GTF3C5 general transcription factor IIIC subunit 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:5,080,660...5,108,001
Ensembl chr12:5,078,277...5,107,933 		JBrowse link
G GTF3C6 general transcription factor IIIC subunit 6 ISO RGD PMID:23031840 RGD:9588284 NCBI chr13:62,903,890...62,912,958
Ensembl chr13:62,903,952...62,912,767 		JBrowse link
G MAF1 MAF1 homolog, negative regulator of RNA polymerase III ISO RGD PMID:23031840 PMID:23165150 RGD:9588284 RGD:9685221 NCBI chr 8:138,315,739...138,318,963
Ensembl chr 8:138,316,980...138,319,456 		JBrowse link
G POLR1C RNA polymerase I and III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr17:28,637,868...28,649,898 JBrowse link
G POLR1D RNA polymerase I and III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 3:6,773,426...6,819,045 JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 6:844,196...856,127
Ensembl chr 6:841,615...855,214 		JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr19:20,654,464...20,668,267
Ensembl chr19:20,654,239...20,669,872 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr15:5,051,705...5,056,497
Ensembl chr15:5,051,712...5,056,413 		JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 8:95,001,525...95,004,749
Ensembl chr 8:95,001,587...95,004,346 		JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 1:646,747...649,196
Ensembl chr 1:646,748...649,029 		JBrowse link
G POLR3A RNA polymerase III subunit A ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 9:53,411,869...53,462,773
Ensembl chr 9:53,411,889...53,464,668 		JBrowse link
G POLR3B RNA polymerase III subunit B ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr11:101,577,134...101,719,214
Ensembl chr11:101,585,900...101,713,126 		JBrowse link
G POLR3C RNA polymerase III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr20:12,901,879...12,919,748
Ensembl chr20:12,901,898...12,919,783 		JBrowse link
G POLR3D RNA polymerase III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 8:20,314,020...20,320,118
Ensembl chr 8:20,314,081...20,319,455 		JBrowse link
G POLR3E RNA polymerase III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 5:19,969,494...20,007,954
Ensembl chr 5:19,976,759...20,000,094 		JBrowse link
G POLR3F RNA polymerase III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 2:47,527,351...47,546,932
Ensembl chr 2:47,528,587...47,547,412 		JBrowse link
G POLR3G RNA polymerase III subunit G ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 4:84,418,692...84,459,920 JBrowse link
G POLR3GL RNA polymerase III subunit GL ISO RGD PMID:20890107 RGD:9685218 NCBI chr20:12,773,971...12,784,023 JBrowse link
G POLR3H RNA polymerase III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr19:24,068,205...24,082,648
Ensembl chr19:24,068,826...24,082,611 		JBrowse link
G POLR3K RNA polymerase III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 5:2,568...10,259
Ensembl chr 5:50...10,259 		JBrowse link
G POU2F1 POU class 2 homeobox 1 ISO RGD PMID:20890107 RGD:9685218 NCBI chr25:61,599,803...61,800,615
Ensembl chr25:61,611,330...61,654,173 		JBrowse link
G RB1 RB transcriptional corepressor 1 ISO RGD PMID:23063750 RGD:9685222 NCBI chr 3:26,220,783...26,393,671
Ensembl chr 3:26,220,803...26,394,546 		JBrowse link
G SNAPC1 small nuclear RNA activating complex polypeptide 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr24:38,943,416...38,977,134
Ensembl chr24:38,943,434...38,978,731 		JBrowse link
G SNAPC2 small nuclear RNA activating complex polypeptide 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 6:7,371,623...7,374,617
Ensembl chr 6:7,370,959...7,376,998 		JBrowse link
G SNAPC3 small nuclear RNA activating complex polypeptide 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:64,138,326...64,181,434
Ensembl chr12:64,141,459...64,181,421 		JBrowse link
G SNAPC4 small nuclear RNA activating complex polypeptide 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:1,801,975...1,829,823
Ensembl chr12:1,802,937...1,829,968 		JBrowse link
G SNAPC5 small nuclear RNA activating complex polypeptide 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr26:17,052,898...17,056,839
Ensembl chr26:17,052,976...17,056,245 		JBrowse link
G SUB1 SUB1 regulator of transcription ISO RGD PMID:23128323 PMID:23165150 RGD:9685220 RGD:9685221 NCBI chr 4:31,860,744...31,879,851
Ensembl chr 4:31,860,830...31,877,070 		JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G ZNF143 zinc finger protein 143 ISO RGD PMID:20890107 RGD:9685218 NCBI chr 1:55,289,081...55,347,413
Ensembl chr 1:55,289,123...55,347,264 		JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr 2:57,088,636...57,117,591
Ensembl chr 2:57,088,513...57,110,407 		JBrowse link
G AQR aquarius intron-binding spliceosomal factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr26:47,927,167...48,036,764
Ensembl chr26:47,927,137...48,036,478 		JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:19,084,908...19,099,204
Ensembl chr20:19,084,954...19,099,590 		JBrowse link
G BUD31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr28:13,734,417...13,750,749
Ensembl chr28:13,733,391...13,749,692 		JBrowse link
G CCDC12 coiled-coil domain containing 12 ISO RGD PMID:23742842 RGD:9686094 NCBI chr22:8,326,480...8,384,985
Ensembl chr22:8,326,798...8,381,938 		JBrowse link
G CDC5L cell division cycle 5 like ISO RGD PMID:23742842 RGD:9686094 NCBI chr17:27,727,185...27,785,233
Ensembl chr17:27,722,819...27,785,268 		JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:49,052,304...49,070,600
Ensembl chr 2:49,054,125...49,070,576 		JBrowse link
G CTNNBL1 catenin beta like 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:25,877,750...26,055,283
Ensembl chr 2:25,877,700...26,055,209 		JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:86,180,225...86,190,445
Ensembl chr 1:86,179,366...86,190,439 		JBrowse link
G DDX23 DEAD-box helicase 23 ISO RGD PMID:19239890 PMID:23454554 RGD:9686089 RGD:9686093 NCBI chr11:45,071,884...45,092,287
Ensembl chr11:45,071,611...45,092,646 		JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr17:40,445,258...40,457,379
Ensembl chr17:40,447,061...40,456,826 		JBrowse link
G DDX42 DEAD-box helicase 42 ISO RGD PMID:17537823 RGD:9686091 NCBI chr16:57,470,095...57,517,056
Ensembl chr16:57,471,015...57,504,239 		JBrowse link
G DDX46 DEAD-box helicase 46 ISO RGD PMID:23454554 RGD:9686093 NCBI chr23:37,547,227...37,613,632 JBrowse link
G DHX15 DEAH-box helicase 15 ISO RGD PMID:23454554 RGD:9686093 NCBI chr27:25,775,156...25,832,309
Ensembl chr27:25,775,160...25,831,860 		JBrowse link
G DHX16 DEAH-box helicase 16 ISO RGD PMID:23454554 RGD:9686093 NCBI chr17:41,780,965...41,801,310
Ensembl chr17:41,780,987...41,801,219 		JBrowse link
G DHX38 DEAH-box helicase 38 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 5:55,243,934...55,264,084
Ensembl chr 5:55,243,911...55,263,706 		JBrowse link
G DHX8 DEAH-box helicase 8 ISO RGD PMID:23454554 RGD:9686093 NCBI chr16:62,887,115...62,925,119
Ensembl chr16:62,887,594...62,925,061 		JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr16:61,505,796...61,549,720
Ensembl chr16:61,505,825...61,551,890 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 ISO RGD PMID:15145352 RGD:9686404 NCBI chr16:72,097,692...72,113,112 JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr23:40,433,429...40,436,188
Ensembl chr23:40,435,002...40,435,913 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr21:32,167,126...32,178,031
Ensembl chr21:32,167,337...32,176,980 		JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:62,772,741...62,780,695
Ensembl chr10:62,772,806...62,778,972 		JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr23:79,891,942...79,903,289 JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr29:21,677,871...21,737,607
Ensembl chr29:21,678,559...21,731,430 		JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 7:30,729,697...30,749,793
Ensembl chr 7:30,731,175...30,749,876 		JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr23:81,330,777...81,340,470
Ensembl chr23:81,330,351...81,339,882 		JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:63,052,937...63,064,157
Ensembl chr 9:63,054,083...63,058,759 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:33,452,705...33,469,070
Ensembl chr 6:33,452,852...33,466,284 		JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:7,795,996...7,839,506
Ensembl chr 6:7,796,045...7,839,244 		JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:109,325,850...109,357,624 JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr25:81,879,532...81,890,684
Ensembl chr25:81,878,111...81,890,701 		JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:114,447,348...114,452,693
Ensembl chr 1:114,446,544...114,451,562 		JBrowse link
G ISY1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr22:51,905,564...51,940,705
Ensembl chr22:51,907,290...51,938,847 		JBrowse link
G LOC103219520 splicing factor U2AF 35 kDa subunit-like protein ISO RGD PMID:19239890 RGD:9686089 NCBI chr 2:86,949,910...86,964,655
Ensembl chr 2:86,950,056...86,964,579 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:40,214,726...40,226,753
Ensembl chr17:40,214,771...40,226,545 		JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr22:50,121,674...50,141,071 JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:16,783,566...16,800,116
Ensembl chr 6:16,782,746...16,800,143 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr21:25,921,288...25,925,237 JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:92,719,482...92,734,351
Ensembl chr 7:92,719,503...92,735,321 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:2,108,212...2,121,547
Ensembl chr 6:2,108,212...2,121,571 		JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr21:86,838,350...86,846,675
Ensembl chr21:86,838,375...86,846,517 		JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit ISO RGD PMID:15145352 RGD:9686404 NCBI chr11:10,406,698...10,414,504 JBrowse link
G MBNL1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr15:38,208,694...38,427,867
Ensembl chr15:38,208,038...38,375,273 		JBrowse link
G PLRG1 pleiotropic regulator 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 7:101,080,254...101,096,048
Ensembl chr 7:101,079,449...101,096,174 		JBrowse link
G PNN pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr24:15,949,015...15,956,969
Ensembl chr24:15,948,722...15,955,618 		JBrowse link
G PPIE peptidylprolyl isomerase E ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr20:93,345,338...93,360,739
Ensembl chr20:93,345,400...93,360,398 		JBrowse link
G PPIG peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr10:55,108,981...55,166,974 JBrowse link
G PPIH peptidylprolyl isomerase H ISO RGD PMID:18544344 RGD:9686376 NCBI chr20:90,250,959...90,275,275
Ensembl chr20:90,256,081...90,274,751 		JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr17:35,260,471...35,281,367 JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr19:4,412,575...4,448,759
Ensembl chr19:4,414,953...4,445,891 		JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr10:86,525,809...86,545,429
Ensembl chr10:86,521,640...86,543,516 		JBrowse link
G PRPF18 pre-mRNA processing factor 18 ISO RGD PMID:24452469 RGD:9686092 NCBI chr 9:13,606,432...13,650,727
Ensembl chr 9:13,606,433...13,652,849 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PRPF3 pre-mRNA processing factor 3 ISO RGD PMID:19239890 RGD:9686089
G PRPF31 pre-mRNA processing factor 31 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 6:46,790,193...46,808,946
Ensembl chr 6:46,793,455...46,808,948 		JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 ISO RGD PMID:19239890 RGD:9686089 NCBI chr12:26,279,510...26,296,771 JBrowse link
G PRPF6 pre-mRNA processing factor 6 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 2:211,482...259,590
Ensembl chr 2:211,604...259,447 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 ISO RGD PMID:23592432 RGD:9686090 NCBI chr16:1,321,568...1,352,775
Ensembl chr16:1,321,416...1,352,466 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr20:36,465,812...36,559,480
Ensembl chr20:36,464,689...36,559,307 		JBrowse link
G QKI QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr13:91,045,167...91,206,190
Ensembl chr13:91,045,209...91,208,471 		JBrowse link
G RBM22 RNA binding motif protein 22 ISO RGD PMID:23742842 RGD:9686094 NCBI chr23:53,302,697...53,312,382 JBrowse link
G RBM8A RNA binding motif protein 8A ISO RGD PMID:15145352 RGD:9686404 NCBI chr20:12,819,891...12,821,656
Ensembl chr20:12,819,956...12,821,629 		JBrowse link
G RBMX RNA binding motif protein X-linked ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr  X:111,880,859...111,892,660 JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr 5:2,148,929...2,163,810 JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr11:103,716,517...103,752,087
Ensembl chr11:103,715,292...103,751,874 		JBrowse link
G SF1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:9,456,524...9,470,920
Ensembl chr 1:9,456,971...9,472,396 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G SF3A2 splicing factor 3a subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:2,034,892...2,047,653
Ensembl chr 6:2,041,384...2,047,542 		JBrowse link
G SF3A3 splicing factor 3a subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:94,880,104...94,907,656
Ensembl chr20:94,880,059...94,909,069 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:82,901,908...82,952,094
Ensembl chr10:82,899,079...82,952,071 		JBrowse link
G SF3B2 splicing factor 3b subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:8,189,636...8,207,024
Ensembl chr 1:8,189,446...8,207,020 		JBrowse link
G SF3B3 splicing factor 3b subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:53,673,443...53,724,485
Ensembl chr 5:53,673,455...53,725,615 		JBrowse link
G SF3B4 splicing factor 3b subunit 4 ISO RGD PMID:17537823 RGD:9686091
G SF3B5 splicing factor 3b subunit 5 ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:29,144,964...29,145,699
Ensembl chr13:29,145,071...29,145,694 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:83,593,429...83,602,309
Ensembl chr14:83,593,025...83,604,002 		JBrowse link
G SLU7 SLU7 homolog, splicing factor ISO RGD PMID:24452469 RGD:9686092 NCBI chr23:62,761,466...62,778,613
Ensembl chr23:62,764,335...62,778,910 		JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr14:693,873...724,226
Ensembl chr14:694,126...724,208 		JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 6:42,305,961...42,329,289
Ensembl chr 6:42,305,687...42,330,332 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A ISO RGD PMID:23592432 RGD:9686090 NCBI chr 6:35,204,017...35,219,810
Ensembl chr 6:35,203,929...35,220,689 		JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr29:19,736,050...19,750,104
Ensembl chr29:19,735,986...19,749,838 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:54,064,240...54,073,341
Ensembl chr 2:54,063,999...54,073,367 		JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:45,654,264...45,666,073
Ensembl chr 2:45,654,285...45,667,736 		JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C ISO RGD PMID:23592432 RGD:9686090 NCBI chr17:37,332,697...37,348,968
Ensembl chr17:37,332,687...37,349,133 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr18:58,860,447...58,876,216
Ensembl chr18:58,858,822...58,876,198 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:39,127,974...39,134,771
Ensembl chr 6:39,127,877...39,134,626 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr19:7,560,946...7,577,338
Ensembl chr19:7,417,483...7,577,914 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr25:25,474,620...25,483,427 JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr11:91,244,619...91,251,805 JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:36,823,959...36,858,240
Ensembl chr14:36,826,779...36,837,137 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SNW1 SNW domain containing 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 ISO RGD PMID:15145352 PMID:17537823 RGD:9686091 RGD:9686404 NCBI chr20:108,023,860...108,053,959 JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:2,570,566...2,589,355
Ensembl chr 5:2,571,109...2,585,640 		JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr11:114,329,529...114,506,944
Ensembl chr11:114,329,733...114,500,732 		JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr16:35,392,573...35,396,815
Ensembl chr16:35,392,873...35,394,982 		JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:108,713,392...108,728,908
Ensembl chr20:108,721,666...108,722,522 		JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:62,885,980...62,932,394
Ensembl chr20:62,883,026...62,916,436 		JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:13,864,683...13,884,424
Ensembl chr13:13,864,870...13,884,334 		JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr16:44,945,193...44,948,496
Ensembl chr16:44,945,200...44,946,438 		JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:35,535,900...35,544,852 JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:103,641,650...103,674,066
Ensembl chr20:103,642,150...103,673,391 		JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr24:47,009,211...47,014,108
Ensembl chr24:47,009,122...47,013,644 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:68,629,812...68,636,958 JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr11:115,813,964...115,822,753
Ensembl chr11:115,810,642...115,822,700 		JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:107,468,855...107,478,822
Ensembl chr20:107,468,940...107,479,036 		JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:10,280,627...10,316,690
Ensembl chr13:10,285,130...10,316,197 		JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 9:112,355,900...112,379,531
Ensembl chr 9:112,358,101...112,379,671 		JBrowse link
G TXNL4A thioredoxin like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:270,392...286,243
Ensembl chr18:270,938...285,966 		JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 6:48,244,247...48,265,029
Ensembl chr 6:48,245,297...48,265,019 		JBrowse link
G XAB2 XPA binding protein 2 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
tRNA maturation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 1:15,568,984...15,573,849
Ensembl chr 1:15,568,976...15,573,082 		JBrowse link
G ELAC1 elaC ribonuclease Z 1 ISO RGD PMID:21572561 RGD:9685334 NCBI chr18:29,988,218...30,008,164 JBrowse link
G ELAC2 elaC ribonuclease Z 2 ISO RGD PMID:21572561 RGD:9685334 NCBI chr16:12,328,864...12,353,916
Ensembl chr16:12,329,300...12,353,872 		JBrowse link
G POP1 POP1 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr 8:93,031,600...93,074,700
Ensembl chr 8:93,043,277...93,074,818 		JBrowse link
G POP4 POP4 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr 6:24,673,364...24,683,017
Ensembl chr 6:24,675,868...24,682,683 		JBrowse link
G POP5 POP5 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr11:115,932,265...115,934,644
Ensembl chr11:115,932,394...115,934,562 		JBrowse link
G POP7 POP7 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr28:12,501,363...12,502,766
Ensembl chr28:12,501,457...12,502,737 		JBrowse link
G RPP14 ribonuclease P/MRP subunit p14 ISO RGD PMID:19931535 RGD:9685326 NCBI chr22:19,594,363...19,596,532
Ensembl chr22:19,601,810...19,602,313
Ensembl chr22:19,601,810...19,602,313 		JBrowse link
G RPP21 ribonuclease P/MRP subunit p21 ISO RGD PMID:19931535 RGD:9685326 NCBI chr17:42,139,103...42,140,986
Ensembl chr17:42,139,150...42,140,806 		JBrowse link
G RPP25 ribonuclease P and MRP subunit p25 ISO RGD PMID:19931535 RGD:9685326 NCBI chr26:8,516,782...8,520,101
Ensembl chr26:8,517,948...8,518,547 		JBrowse link
G RPP30 ribonuclease P/MRP subunit p30 ISO RGD PMID:19931535 RGD:9685326 NCBI chr 9:84,208,181...84,237,067
Ensembl chr 9:84,208,199...84,236,957 		JBrowse link
G RPP38 ribonuclease P/MRP subunit p38 ISO RGD PMID:19931535 RGD:9685326 NCBI chr 9:15,073,265...15,080,322
Ensembl chr 9:15,079,383...15,080,231 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 ISO RGD PMID:19931535 RGD:9685326 NCBI chr17:67,172,759...67,181,669
Ensembl chr17:67,173,130...67,181,975 		JBrowse link
G RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase ISO RGD PMID:25071838 RGD:9685342 NCBI chr19:15,216,939...15,243,259
Ensembl chr19:15,216,556...15,243,132 		JBrowse link
G SSB small RNA binding exonuclease protection factor La ISO RGD PMID:21572561 RGD:9685334 NCBI chr10:55,325,975...55,339,317
Ensembl chr10:55,262,897...55,339,008 		JBrowse link
G TSEN15 tRNA splicing endonuclease subunit 15 ISO RGD PMID:25071838 RGD:9685342 NCBI chr25:45,295,711...45,318,228
Ensembl chr25:45,295,743...45,318,159 		JBrowse link
G TSEN2 tRNA splicing endonuclease subunit 2 ISO RGD PMID:25071838 RGD:9685342 NCBI chr22:48,458,404...48,510,420
Ensembl chr22:48,463,693...48,510,123 		JBrowse link
G TSEN34 tRNA splicing endonuclease subunit 34 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 6:46,867,553...46,871,704
Ensembl chr 6:46,868,055...46,871,739 		JBrowse link
G TSEN54 tRNA splicing endonuclease subunit 54 ISO RGD PMID:25071838 RGD:9685342 NCBI chr16:46,152,547...46,162,328
Ensembl chr16:46,152,869...46,161,379 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4028
    regulatory pathway 2488
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1327
        transcription pathway 922
          RNA polymerase transcription pathway 348
            eukaryotic RNA polymerase transcription pathway + 348
            prokaryotic RNA polymerase transcription pathway 0
paths to the root