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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA polymerase transcription pathway
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Accession:PW:0001272 term browser browse the term
Definition:The pathway of DNA transcription carried out by the prokaryotic and the several eukaryotic polymerases.



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3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:38,528,700...38,531,899
Ensembl chr18:38,528,621...38,530,846
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr13:37,817,440...37,827,868
Ensembl chr13:37,817,442...37,825,212
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:1,364,399...1,398,496
Ensembl chr 8:1,364,353...1,396,255
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr17:6,537,404...6,576,121
Ensembl chr17:6,537,465...6,575,825
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:10,131,129...10,151,562
Ensembl chr 6:10,131,420...10,154,201
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:11,265,044...11,297,395
Ensembl chr10:11,262,265...11,292,832
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:54,986,709...55,012,499
Ensembl chr18:54,986,810...55,009,382
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr24:41,604,988...41,615,988
Ensembl chr24:41,605,447...41,615,671
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:74,758,399...74,782,470
Ensembl chr  X:74,758,496...74,782,194
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:34,493,922...34,563,899
Ensembl chr18:34,493,980...34,568,326
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr12:1,424,584...1,426,275
Ensembl chr12:1,424,591...1,426,452
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr13:46,011,473...46,083,024
Ensembl chr13:46,011,681...46,083,076
JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:59,736,739...59,751,967
Ensembl chr 2:59,736,186...59,751,704
JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr 8:3,580,768...3,585,546
Ensembl chr 8:3,569,399...3,586,070
JBrowse link
G PAPOLA poly(A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr 8:65,240,704...65,283,231
Ensembl chr 8:65,238,568...65,281,336
JBrowse link
G PAPOLB poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr 6:12,792,167...12,795,557 JBrowse link
G PAPOLG poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr10:60,879,161...60,910,417
Ensembl chr10:60,879,037...60,907,498
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr21:16,006,022...16,028,369
Ensembl chr21:16,006,749...16,028,021
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:109,757,951...109,795,672
Ensembl chr 1:109,758,019...109,795,651
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr19:22,788,462...22,904,610
Ensembl chr19:22,788,508...23,024,378
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr24:2,042,521...2,128,942
Ensembl chr24:2,042,888...2,128,867
JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:54,938,250...54,974,536
Ensembl chr11:54,938,372...54,974,547
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr33:29,911,457...29,943,596
Ensembl chr33:29,912,569...29,962,175
JBrowse link
G RAMAC RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 3:54,776,831...54,782,047
Ensembl chr 3:54,776,826...54,781,270
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr12:47,944,600...48,306,789
Ensembl chr12:47,946,561...48,275,969
JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:24,465,634...24,499,526
Ensembl chr 1:24,430,063...24,497,206
JBrowse link
RNA polymerase I transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAVIN1 caveolae associated protein 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr 9:20,511,079...20,525,973
Ensembl chr 9:20,511,089...20,524,794
JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CREBBP CREB binding protein ISO RGD PMID:24022641 RGD:9588250 NCBI chr 6:37,410,201...37,536,688
Ensembl chr 6:37,409,930...37,534,176
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G NCL nucleolin ISO RGD PMID:21893173 PMID:25225127 RGD:9588244 RGD:9588251 NCBI chr25:43,330,524...43,384,909
Ensembl chr25:43,330,799...43,384,258
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G POLR1A RNA polymerase I subunit A ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr17:38,990,379...39,070,910
Ensembl chr17:39,000,778...39,070,356
JBrowse link
G POLR1B RNA polymerase I subunit B ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr17:36,774,472...36,798,900
Ensembl chr17:36,774,541...36,797,525
JBrowse link
G POLR1C RNA polymerase I and III subunit C ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr12:11,978,337...11,982,265
Ensembl chr12:11,978,422...12,008,579
JBrowse link
G POLR1D RNA polymerase I and III subunit D ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr25:11,997,020...11,998,742 JBrowse link
G POLR1E RNA polymerase I subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr11:53,793,324...53,808,725
Ensembl chr11:53,793,042...53,808,724
JBrowse link
G POLR1F RNA polymerase I subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr14:33,845,768...33,865,686
Ensembl chr14:33,845,995...33,865,720
JBrowse link
G POLR1G RNA polymerase I subunit G ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 1:110,146,495...110,149,338
Ensembl chr 1:110,146,012...110,149,186
JBrowse link
G POLR1H RNA polymerase I subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr35:26,285,520...26,288,550
Ensembl chr35:26,285,538...26,288,534
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr20:57,649,836...57,653,661
Ensembl chr20:57,649,868...57,654,199
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr10:26,694,895...26,707,451
Ensembl chr10:26,691,256...26,707,507
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr34:17,240,604...17,244,907
Ensembl chr34:17,240,624...17,244,904
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr13:2,057,540...2,060,712
Ensembl chr13:2,057,628...2,060,312
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr18:45,201,194...45,203,825 JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 6:28,478,770...28,507,722
Ensembl chr 6:28,478,829...28,507,696
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
G SIRT1 sirtuin 1 ISO RGD PMID:24022641 RGD:9588250 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SIRT7 sirtuin 7 ISO RGD PMID:24022641 RGD:9588250 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 3:58,403,146...58,418,782
Ensembl chr 3:58,403,146...58,418,782
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:21454601 RGD:9588245 NCBI chr18:38,802,673...38,812,134
Ensembl chr18:38,802,619...38,812,131
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:21454601 RGD:9588245 NCBI chr15:18,387,624...18,429,553
Ensembl chr15:18,388,512...18,429,553
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 2:71,865,274...71,898,236
Ensembl chr 2:71,865,289...71,898,236
JBrowse link
G TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr38:16,827,853...16,858,506
Ensembl chr38:16,828,205...16,858,432
JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr17:6,873,275...6,940,432
Ensembl chr17:6,873,360...6,937,789
JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 5:68,175,196...68,184,267
Ensembl chr 5:68,175,014...68,184,277
JBrowse link
G TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr21:7,013,383...7,023,497 JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr12:72,458,959...72,479,271
Ensembl chr12:72,459,041...72,479,124
JBrowse link
G TTF1 transcription termination factor 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr 9:51,855,565...51,881,000
Ensembl chr 9:51,855,559...51,878,459
JBrowse link
G UBTF upstream binding transcription factor ISO RGD PMID:21893173 PMID:22960599 RGD:9588243 RGD:9588244 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr32:10,430,159...10,631,305
Ensembl chr32:10,430,090...10,632,172
JBrowse link
G AFF4 ALF transcription elongation factor 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr11:21,157,790...21,218,750
Ensembl chr11:21,163,398...21,218,190
JBrowse link
G CCNK cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr 8:67,910,772...67,927,216
Ensembl chr 8:67,901,426...67,945,214
JBrowse link
G CCNT1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr27:5,788,426...5,817,518
Ensembl chr27:5,788,785...5,817,043
JBrowse link
G CCNT2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr19:37,743,442...37,787,875
Ensembl chr19:37,743,235...37,783,220
JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:55,615,271...55,619,493
Ensembl chr 9:55,615,827...55,620,236
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G EAF1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr23:27,188,983...27,203,441
Ensembl chr23:27,159,751...27,203,558
JBrowse link
G EAF2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr33:25,113,348...25,147,064
Ensembl chr33:25,112,570...25,146,692
JBrowse link
G ELL elongation factor for RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 3:13,673,653...13,746,604
Ensembl chr 3:13,673,785...13,746,316
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr30:10,514,633...10,517,963
Ensembl chr30:10,515,045...10,517,880
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr20:53,771,201...53,780,646
Ensembl chr20:53,771,325...53,780,644
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr22:5,757,445...5,904,725
Ensembl chr22:5,757,960...5,904,814
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G MLLT1 MLLT1 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr20:53,844,972...53,913,753
Ensembl chr20:53,779,802...53,913,651
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr11:39,923,165...40,203,574
Ensembl chr11:39,927,517...40,203,281
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:54,938,250...54,974,536
Ensembl chr11:54,938,372...54,974,547
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr33:29,911,457...29,943,596
Ensembl chr33:29,912,569...29,962,175
JBrowse link
G NELFA negative elongation factor complex member A ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:62,147,948...62,164,039
Ensembl chr 3:62,147,948...62,164,112
JBrowse link
G NELFB negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:48,411,725...48,425,044
Ensembl chr 9:48,408,005...48,423,308
JBrowse link
G NELFCD negative elongation factor complex member C/D ISO RGD PMID:24050178 RGD:9681735 NCBI chr24:43,685,356...43,743,239
Ensembl chr24:43,734,236...43,743,233
JBrowse link
G NELFE negative elongation factor complex member E ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:1,406,411...1,412,387
Ensembl chr12:1,406,271...1,412,324
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr12:47,944,600...48,306,789
Ensembl chr12:47,946,561...48,275,969
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 3:58,403,146...58,418,782
Ensembl chr 3:58,403,146...58,418,782
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr18:38,802,673...38,812,134
Ensembl chr18:38,802,619...38,812,131
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr15:18,387,624...18,429,553
Ensembl chr15:18,388,512...18,429,553
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447
JBrowse link
G TCEA1 transcription elongation factor A1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr29:5,616,936...5,655,341
Ensembl chr29:5,616,961...5,697,284
JBrowse link
G TCEA2 transcription elongation factor A2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr24:47,508,161...47,512,399
Ensembl chr24:47,508,136...47,537,250
JBrowse link
G TCEA3 transcription elongation factor A3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:75,998,154...76,040,461
Ensembl chr 2:75,998,214...76,040,413
JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr20:27,226,957...27,335,327
Ensembl chr20:27,224,375...27,333,445
JBrowse link
G ATXN7L3 ataxin 7 like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:19,196,688...19,204,724
Ensembl chr 9:19,196,693...19,202,447
JBrowse link
G CCNH cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr 3:21,046,477...21,067,305
Ensembl chr 3:21,046,472...21,178,315
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:54,317,472...54,350,633
Ensembl chr 2:54,317,534...54,350,742
JBrowse link
G DR1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:55,687,581...55,717,118
Ensembl chr 6:55,693,752...55,716,516
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:9,895,537...9,905,081
Ensembl chr13:9,895,630...9,905,301
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO RGD PMID:21592869 RGD:9681726 NCBI chr22:52,339,011...52,372,618 JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 8:53,520,740...53,568,888
Ensembl chr 8:53,524,787...53,568,705
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr30:24,502,825...24,522,248
Ensembl chr30:24,484,701...24,522,207
JBrowse link
G GTF2B general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr 6:59,491,986...59,527,142
Ensembl chr 6:59,492,055...59,527,054
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr33:24,107,650...24,207,543
Ensembl chr33:24,151,700...24,186,512
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr16:33,697,872...33,778,247
Ensembl chr16:33,707,420...33,777,851
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr20:53,771,201...53,780,646
Ensembl chr20:53,771,325...53,780,644
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr22:5,757,445...5,904,725
Ensembl chr22:5,757,960...5,904,814
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr21:40,770,661...40,807,329
Ensembl chr21:40,770,983...40,806,556
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr26:5,985,094...6,011,253
Ensembl chr26:5,985,798...6,011,163
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr12:675,960...681,504
Ensembl chr12:675,983...681,425
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:47,669,196...47,681,370
Ensembl chr 1:47,669,248...47,681,368
JBrowse link
G HCFC2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr15:42,560,028...42,596,335
Ensembl chr15:42,560,075...42,597,330
JBrowse link
G KAT14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr24:4,933,066...4,968,473
Ensembl chr24:4,933,069...4,968,216
JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:20,778,434...20,787,057
Ensembl chr 9:20,779,042...20,787,067
JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr23:23,166,722...23,242,447
Ensembl chr23:23,168,600...23,233,478
JBrowse link
G LOC475708 STAGA complex 65 subunit gamma ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:21,550,614...21,580,113
Ensembl chr17:21,566,827...21,688,006
JBrowse link
G MBIP MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 8:14,883,317...14,908,664
Ensembl chr 8:14,886,638...14,908,610
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase ISO RGD PMID:21592869 RGD:9681726 NCBI chr 8:35,747,883...35,946,353
Ensembl chr 8:35,756,933...35,946,353
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374
JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:18,179,656...18,209,206
Ensembl chr 6:18,172,289...18,209,160
JBrowse link
G SUPT20H SPT20 homolog, SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr25:3,658,528...3,698,487
Ensembl chr25:3,658,795...3,701,763
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:13,083,084...13,684,090
Ensembl chr12:13,154,955...13,670,397
JBrowse link
G TADA1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:31,513,289...31,529,891
Ensembl chr 7:31,513,496...31,528,843
JBrowse link
G TADA2A transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:37,188,193...37,241,605
Ensembl chr 9:37,188,249...37,241,512
JBrowse link
G TADA2B transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:59,108,678...59,122,112
Ensembl chr 3:59,106,351...59,122,125
JBrowse link
G TADA3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr20:8,453,269...8,464,921
Ensembl chr20:8,453,489...8,464,913
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:55,693,091...55,764,268
Ensembl chr  X:55,693,194...55,763,683
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr21:29,917,941...29,919,347
Ensembl chr21:29,917,947...29,919,330
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr12:4,088,203...4,095,300
Ensembl chr12:4,088,680...4,094,125
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 2:71,865,274...71,898,236
Ensembl chr 2:71,865,289...71,898,236
JBrowse link
G TAF13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 6:42,716,158...42,723,888
Ensembl chr 6:42,715,951...42,799,271
JBrowse link
G TAF15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 9:37,842,772...37,873,302
Ensembl chr 9:37,842,772...37,873,094
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr13:18,724,408...18,824,025
Ensembl chr13:18,729,234...18,823,979
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:28,121,719...28,298,961
Ensembl chr 2:28,122,649...28,298,946
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr24:46,076,744...46,107,371
Ensembl chr24:46,077,578...46,143,828
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr28:15,747,102...15,761,744
Ensembl chr28:15,747,120...15,760,901
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:9,646,516...9,674,318
Ensembl chr 4:9,646,510...9,673,148
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 6:9,475,132...9,488,611
Ensembl chr 6:9,479,884...9,488,561
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr18:53,898,748...53,910,836
Ensembl chr18:53,898,732...53,910,454
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:36,295,387...36,297,681
Ensembl chr 2:36,295,911...36,296,960
JBrowse link
G TAF8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr12:10,689,268...10,720,945
Ensembl chr12:10,689,289...10,709,532
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 2:54,403,908...54,406,857
Ensembl chr 2:54,390,411...54,406,872
JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:23146842 PMID:24120742 RGD:9681721 RGD:9681723 NCBI chr12:72,458,959...72,479,271
Ensembl chr12:72,459,041...72,479,124
JBrowse link
G TRRAP transformation/transcription domain associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:10,519,734...10,635,175
Ensembl chr 6:10,519,711...10,632,776
JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:42,493,776...42,519,740
Ensembl chr 5:42,496,472...42,540,378
JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:50,352,600...50,371,224
Ensembl chr 9:50,352,472...50,371,236
JBrowse link
G YEATS2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr34:16,654,672...16,777,493
Ensembl chr34:16,654,493...16,777,506
JBrowse link
G ZZZ3 zinc finger ZZ-type containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:69,180,465...69,278,740
Ensembl chr 6:69,180,349...69,277,596
JBrowse link
RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNC cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:57,738,576...57,760,918
Ensembl chr12:57,739,616...57,759,609
JBrowse link
G CDC14A cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 6:49,429,675...49,678,376
Ensembl chr 6:49,497,939...49,693,665
JBrowse link
G CDC14B cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:70,232,932...70,335,950
Ensembl chr 1:70,232,947...70,335,943
JBrowse link
G CDK12 cyclin dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 9:22,900,170...22,979,353
Ensembl chr 9:22,917,979...22,979,019
JBrowse link
G CDK19 cyclin dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:67,227,374...67,369,481
Ensembl chr12:67,231,463...67,327,084
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 2:54,317,472...54,350,633
Ensembl chr 2:54,317,534...54,350,742
JBrowse link
G CDK8 cyclin dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 PMID:24088064 RGD:9681732 RGD:9681737 RGD:9681738 NCBI chr25:13,043,949...13,179,752
Ensembl chr25:13,045,343...13,179,656
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 9:55,615,271...55,619,493
Ensembl chr 9:55,615,827...55,620,236
JBrowse link
G CTDP1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:886,973...945,994
Ensembl chr 1:762,020...946,142
JBrowse link
G CTDSP1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr37:25,051,839...25,057,506
Ensembl chr37:25,050,267...25,056,113
JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349
JBrowse link
G MED10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr34:7,327,370...7,334,833 JBrowse link
G MED11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:31,821,263...31,822,946
Ensembl chr 5:31,821,610...31,822,890
JBrowse link
G MED12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G MED12L mediator complex subunit 12L ISO RGD PMID:24088064 RGD:9681732 NCBI chr23:45,701,890...45,987,504
Ensembl chr23:45,708,417...45,987,175
JBrowse link
G MED13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:34,638,892...34,742,235
Ensembl chr 9:34,641,601...34,738,352
JBrowse link
G MED13L mediator complex subunit 13L ISO RGD PMID:24088064 RGD:9681732 NCBI chr26:12,768,762...13,031,251
Ensembl chr26:12,770,588...13,030,512
JBrowse link
G MED14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:35,125,270...35,191,260
Ensembl chr  X:35,125,774...35,191,122
JBrowse link
G MED15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 NCBI chr26:30,299,424...30,368,460
Ensembl chr26:30,299,442...30,367,572
JBrowse link
G MED16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr20:57,771,543...57,782,839
Ensembl chr20:57,777,827...57,782,819
JBrowse link
G MED17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr21:6,967,304...6,990,542
Ensembl chr21:6,967,481...6,990,547
JBrowse link
G MED18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:72,111,764...72,119,909
Ensembl chr 2:72,112,101...72,119,835
JBrowse link
G MED19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr18:38,490,536...38,497,508
Ensembl chr18:38,490,714...38,496,314
JBrowse link
G MED20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:10,569,051...10,580,809
Ensembl chr12:10,570,664...10,580,675
JBrowse link
G MED21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr27:20,611,263...20,619,215
Ensembl chr27:20,612,295...20,619,130
JBrowse link
G MED22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:49,777,374...49,783,501 JBrowse link
G MED23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:195,638...240,741
Ensembl chr12:195,726...240,516
JBrowse link
G MED24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:22,500,937...22,528,262
Ensembl chr 9:22,501,070...22,527,843
JBrowse link
G MED25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:106,723,737...106,740,077
Ensembl chr 1:106,727,141...106,740,032
JBrowse link
G MED26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr20:45,923,034...45,977,118 JBrowse link
G MED27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:52,136,652...52,331,676
Ensembl chr 9:52,136,698...52,328,998
JBrowse link
G MED28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:62,887,095...62,895,588
Ensembl chr 3:62,890,515...62,895,562
JBrowse link
G MED29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:113,823,875...113,827,695
Ensembl chr 1:113,823,877...113,827,718
JBrowse link
G MED30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:16,928,166...16,949,503
Ensembl chr13:16,928,161...16,949,295
JBrowse link
G MED31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:30,693,844...30,700,824
Ensembl chr 5:30,700,188...30,700,580
JBrowse link
G MED4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr22:3,396,276...3,411,037
Ensembl chr22:3,396,267...3,410,608
JBrowse link
G MED6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:44,301,449...44,323,554
Ensembl chr 8:44,301,297...44,323,483
JBrowse link
G MED7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:52,998,748...53,004,063
Ensembl chr 4:52,998,748...53,004,063
JBrowse link
G MED8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr15:16,780,514...16,786,013 JBrowse link
G MED9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:41,967,951...41,982,354
Ensembl chr 5:41,967,651...41,982,349
JBrowse link
G POLR2A RNA polymerase II subunit A ISO RGD PMID:22960599 RGD:9588243 NCBI chr 5:32,403,814...32,429,717
Ensembl chr 5:32,403,829...32,429,681
JBrowse link
G POLR2B RNA polymerase II subunit B ISO RGD PMID:22960599 RGD:9588243 NCBI chr13:49,091,458...49,138,413
Ensembl chr13:49,090,863...49,138,487
JBrowse link
G POLR2C RNA polymerase II subunit C ISO RGD PMID:22960599 RGD:9588243 NCBI chr 2:58,953,568...58,962,522
Ensembl chr 2:58,950,622...58,962,505
JBrowse link
G POLR2D RNA polymerase II subunit D ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:22,754,118...22,774,054
Ensembl chr19:22,754,141...22,774,231
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:22960599 RGD:9588243 NCBI chr20:57,649,836...57,653,661
Ensembl chr20:57,649,868...57,654,199
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:22960599 RGD:9588243 NCBI chr10:26,694,895...26,707,451
Ensembl chr10:26,691,256...26,707,507
JBrowse link
G POLR2G RNA polymerase II subunit G ISO RGD PMID:22960599 RGD:9588243 NCBI chr18:53,916,431...53,919,724
Ensembl chr18:53,916,435...53,919,549
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:22960599 RGD:9588243 NCBI chr34:17,240,604...17,244,907
Ensembl chr34:17,240,624...17,244,904
JBrowse link
G POLR2I RNA polymerase II subunit I ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:116,586,022...116,587,551
Ensembl chr 1:116,586,329...116,587,550
JBrowse link
G POLR2J RNA polymerase II subunit J ISO RGD PMID:22960599 RGD:9588243 NCBI chr 6:7,707,426...7,710,882 JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:22960599 RGD:9588243 NCBI chr13:2,057,540...2,060,712
Ensembl chr13:2,057,628...2,060,312
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:22960599 RGD:9588243 NCBI chr18:45,201,194...45,203,825 JBrowse link
G RPAP2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 6:56,564,310...56,644,382 JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 5:56,620,803...56,650,131
Ensembl chr 5:56,620,805...56,650,131
JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:38,528,700...38,531,899
Ensembl chr18:38,528,621...38,530,846
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr13:37,817,440...37,827,868
Ensembl chr13:37,817,442...37,825,212
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:1,364,399...1,398,496
Ensembl chr 8:1,364,353...1,396,255
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr17:6,537,404...6,576,121
Ensembl chr17:6,537,465...6,575,825
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:10,131,129...10,151,562
Ensembl chr 6:10,131,420...10,154,201
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:11,265,044...11,297,395
Ensembl chr10:11,262,265...11,292,832
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:54,986,709...55,012,499
Ensembl chr18:54,986,810...55,009,382
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr24:41,604,988...41,615,988
Ensembl chr24:41,605,447...41,615,671
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:74,758,399...74,782,470
Ensembl chr  X:74,758,496...74,782,194
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr18:34,493,922...34,563,899
Ensembl chr18:34,493,980...34,568,326
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr12:1,424,584...1,426,275
Ensembl chr12:1,424,591...1,426,452
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr13:46,011,473...46,083,024
Ensembl chr13:46,011,681...46,083,076
JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:59,736,739...59,751,967
Ensembl chr 2:59,736,186...59,751,704
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr21:16,006,022...16,028,369
Ensembl chr21:16,006,749...16,028,021
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 1:109,757,951...109,795,672
Ensembl chr 1:109,758,019...109,795,651
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr19:22,788,462...22,904,610
Ensembl chr19:22,788,508...23,024,378
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr24:2,042,521...2,128,942
Ensembl chr24:2,042,888...2,128,867
JBrowse link
RNA polymerase III transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr 2:54,654,406...54,743,443
Ensembl chr 2:54,654,481...54,740,787
JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr 8:72,588,578...72,632,259
Ensembl chr 8:72,588,693...72,632,263
JBrowse link
G BRF2 BRF2 RNA polymerase III transcription initiation factor subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr16:27,543,588...27,547,712
Ensembl chr16:27,543,858...27,547,106
JBrowse link
G CRCP CGRP receptor component ISO RGD PMID:12391170 RGD:9685217 NCBI chr 6:806,892...843,066
Ensembl chr 6:806,744...842,424
JBrowse link
G GTF3A general transcription factor IIIA ISO RGD PMID:23031840 RGD:9588284 NCBI chr25:12,171,058...12,183,491
Ensembl chr25:12,166,981...12,230,467
JBrowse link
G GTF3C1 general transcription factor IIIC subunit 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 6:19,100,699...19,174,495
Ensembl chr 6:19,100,766...19,173,972
JBrowse link
G GTF3C2 general transcription factor IIIC subunit 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr17:21,292,869...21,317,429
Ensembl chr17:21,293,419...21,307,320
JBrowse link
G GTF3C3 general transcription factor IIIC subunit 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr37:6,360,072...6,397,959
Ensembl chr37:6,359,568...6,397,932
JBrowse link
G GTF3C4 general transcription factor IIIC subunit 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 9:51,602,025...51,630,139
Ensembl chr 9:51,606,235...51,630,637
JBrowse link
G GTF3C5 general transcription factor IIIC subunit 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 9:51,347,273...51,362,621
Ensembl chr 9:51,337,187...51,362,422
JBrowse link
G GTF3C6 general transcription factor IIIC subunit 6 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:67,491,034...67,505,012
Ensembl chr12:67,490,780...67,557,609
JBrowse link
G MAF1 MAF1 homolog, negative regulator of RNA polymerase III ISO RGD PMID:23031840 PMID:23165150 RGD:9588284 RGD:9685221 NCBI chr13:37,598,819...37,601,713
Ensembl chr13:37,598,600...37,601,591
JBrowse link
G POLR1C RNA polymerase I and III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr12:11,978,337...11,982,265
Ensembl chr12:11,978,422...12,008,579
JBrowse link
G POLR1D RNA polymerase I and III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr25:11,997,020...11,998,742 JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr20:57,649,836...57,653,661
Ensembl chr20:57,649,868...57,654,199
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr10:26,694,895...26,707,451
Ensembl chr10:26,691,256...26,707,507
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr34:17,240,604...17,244,907
Ensembl chr34:17,240,624...17,244,904
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr13:2,057,540...2,060,712
Ensembl chr13:2,057,628...2,060,312
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr18:45,201,194...45,203,825 JBrowse link
G POLR3A RNA polymerase III subunit A ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 4:27,834,197...27,883,065
Ensembl chr 4:27,835,612...27,883,436
JBrowse link
G POLR3B RNA polymerase III subunit B ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr10:32,202,188...32,309,775
Ensembl chr10:32,202,190...32,309,614
JBrowse link
G POLR3C RNA polymerase III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr17:58,634,299...58,646,056
Ensembl chr17:58,636,244...58,645,838
JBrowse link
G POLR3D RNA polymerase III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr25:35,011,189...35,016,617
Ensembl chr25:35,011,861...35,016,605
JBrowse link
G POLR3E RNA polymerase III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 6:23,334,495...23,357,898
Ensembl chr 6:23,329,228...23,358,486
JBrowse link
G POLR3F RNA polymerase III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr24:4,715,146...4,727,938
Ensembl chr24:4,663,302...4,727,920
JBrowse link
G POLR3G RNA polymerase III subunit G ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 3:18,426,169...18,529,304
Ensembl chr 3:18,427,985...18,467,801
JBrowse link
G POLR3GL RNA polymerase III subunit GL ISO RGD PMID:20890107 RGD:9685218 NCBI chr17:58,751,942...58,764,946
Ensembl chr17:58,751,604...58,764,881
JBrowse link
G POLR3H RNA polymerase III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr10:23,728,697...23,742,345
Ensembl chr10:23,728,998...23,741,349
JBrowse link
G POLR3K RNA polymerase III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 6:40,417,020...40,420,030
Ensembl chr 6:40,417,051...40,419,917
JBrowse link
G POU2F1 POU class 2 homeobox 1 ISO RGD PMID:20890107 RGD:9685218 NCBI chr 7:30,975,303...31,162,288
Ensembl chr 7:30,986,181...31,162,246
JBrowse link
G RB1 RB transcriptional corepressor 1 ISO RGD PMID:23063750 RGD:9685222 NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726
JBrowse link
G SNAPC1 small nuclear RNA activating complex polypeptide 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 8:36,667,083...36,692,712
Ensembl chr 8:36,667,158...36,691,590
JBrowse link
G SNAPC2 small nuclear RNA activating complex polypeptide 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr20:52,608,384...52,611,252
Ensembl chr20:52,608,447...52,611,221
JBrowse link
G SNAPC3 small nuclear RNA activating complex polypeptide 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr11:35,704,161...35,742,929
Ensembl chr11:35,702,849...35,742,907
JBrowse link
G SNAPC4 small nuclear RNA activating complex polypeptide 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 9:49,090,615...49,110,763
Ensembl chr 9:49,091,636...49,110,767
JBrowse link
G SNAPC5 small nuclear RNA activating complex polypeptide 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr30:30,759,501...30,765,484
Ensembl chr30:30,759,501...30,765,445
JBrowse link
G SUB1 SUB1 regulator of transcription ISO RGD PMID:23128323 PMID:23165150 RGD:9685220 RGD:9685221 NCBI chr 4:74,931,105...74,951,707
Ensembl chr 4:74,933,620...74,951,573
JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:20890107 PMID:23031840 RGD:9588284 RGD:9685218 NCBI chr12:72,458,959...72,479,271
Ensembl chr12:72,459,041...72,479,124
JBrowse link
G ZNF143 zinc finger protein 143 ISO RGD PMID:20890107 RGD:9685218 NCBI chr21:32,757,764...32,817,241
Ensembl chr21:32,775,394...32,817,243
JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr24:25,053,200...25,070,646
Ensembl chr24:25,053,034...25,082,347
JBrowse link
G AQR aquarius intron-binding spliceosomal factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr30:2,571,359...2,670,715
Ensembl chr30:2,571,554...2,670,597
JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr17:52,277,677...52,291,150
Ensembl chr17:52,277,804...52,291,022
JBrowse link
G BUD31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 6:10,169,422...10,178,231 JBrowse link
G CCDC12 coiled-coil domain containing 12 ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:41,838,497...41,889,902
Ensembl chr20:41,834,095...41,890,482
JBrowse link
G CDC5L cell division cycle 5 like ISO RGD PMID:23742842 RGD:9686094 NCBI chr12:12,779,936...12,822,978
Ensembl chr12:12,780,010...12,822,801
JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr24:3,294,607...3,310,846
Ensembl chr24:3,294,616...3,310,702
JBrowse link
G CTNNBL1 catenin beta like 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr24:26,253,884...26,415,166
Ensembl chr24:26,253,962...26,415,163
JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr21:6,037,305...6,049,124
Ensembl chr21:6,038,656...6,048,400
JBrowse link
G DDX23 DEAD-box helicase 23 ISO RGD PMID:19239890 PMID:23454554 RGD:9686089 RGD:9686093 NCBI chr27:5,690,452...5,704,762
Ensembl chr27:5,693,931...5,704,778
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr12:1,032,377...1,044,465
Ensembl chr12:1,032,368...1,044,492
JBrowse link
G DDX42 DEAD-box helicase 42 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:11,737,629...11,774,515
Ensembl chr 9:11,737,430...11,773,625
JBrowse link
G DDX46 DEAD-box helicase 46 ISO RGD PMID:23454554 RGD:9686093 NCBI chr11:22,834,843...22,906,976
Ensembl chr11:22,833,926...22,905,964
JBrowse link
G DHX15 DEAH-box helicase 15 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 3:85,549,946...85,609,598
Ensembl chr 3:85,549,981...85,609,612
JBrowse link
G DHX16 DEAH-box helicase 16 ISO RGD PMID:23454554 RGD:9686093 NCBI chr12:460,669...478,026
Ensembl chr12:460,713...478,001
JBrowse link
G DHX38 DEAH-box helicase 38 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 5:77,810,853...77,830,020
Ensembl chr 5:77,811,041...77,830,015
JBrowse link
G DHX8 DEAH-box helicase 8 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 9:19,734,356...19,766,212
Ensembl chr 9:19,729,816...19,766,555
JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr 9:18,585,918...18,631,743
Ensembl chr 9:18,585,971...18,635,570
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 ISO RGD PMID:15145352 RGD:9686404 NCBI chr 9:1,582,950...1,593,893
Ensembl chr 9:1,582,993...1,593,892
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:25,464,601...25,467,460
Ensembl chr11:25,466,185...25,467,117
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr27:1,013,459...1,020,083
Ensembl chr27:1,015,868...1,019,891
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:39,498,805...39,509,034
Ensembl chr14:39,500,897...39,508,952
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr36:20,974,541...20,983,972
Ensembl chr36:20,974,648...20,980,137
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:3,355,051...3,360,376
Ensembl chr11:3,355,050...3,360,258
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr32:6,323,444...6,341,238
Ensembl chr32:6,323,469...6,341,166
JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:2,050,753...2,059,999
Ensembl chr11:2,050,871...2,059,999
JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:19,558,685...19,569,874
Ensembl chr 4:19,558,736...19,568,885
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:75,499,334...75,511,525
Ensembl chr 1:75,499,393...75,511,425
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:114,267,195...114,279,107
Ensembl chr 1:114,267,210...114,278,837
JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:52,993,934...53,034,608
Ensembl chr20:52,993,824...53,034,606
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:76,073,553...76,108,763
Ensembl chr 2:76,077,022...76,105,433
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 5:11,292,219...11,296,851
Ensembl chr 5:11,292,262...11,296,797
JBrowse link
G ISY1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:2,945,636...2,972,245
Ensembl chr20:2,945,720...2,972,245
JBrowse link
G LOC475399 heterogeneous nuclear ribonucleoprotein C ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr15:18,239,810...18,299,065 JBrowse link
G LOC478184 pre-mRNA-splicing factor SYF2 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:74,573,023...74,580,061 JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:1,270,328...1,279,269 JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:4,328,930...4,342,731
Ensembl chr20:4,329,038...4,342,859
JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:44,707,460...44,720,490
Ensembl chr20:44,707,460...44,720,490
JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:44,857,882...44,860,929
Ensembl chr14:44,857,930...44,860,821
JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr15:44,651,830...44,666,418
Ensembl chr15:44,651,830...44,666,418
JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:56,730,476...56,735,115
Ensembl chr20:56,730,486...56,735,112
JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:56,908,344...56,916,512 JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit ISO RGD PMID:15145352 RGD:9686404 NCBI chr27:35,125,786...35,133,372 JBrowse link
G MBNL1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr23:46,697,755...46,941,300
Ensembl chr23:46,737,790...46,938,233
JBrowse link
G PLRG1 pleiotropic regulator 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr15:52,196,998...52,213,378
Ensembl chr15:52,198,635...52,213,239
JBrowse link
G PNN pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 8:17,354,004...17,361,462
Ensembl chr 8:17,354,004...17,361,462
JBrowse link
G PPIE peptidylprolyl isomerase E ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr15:3,156,067...3,173,028
Ensembl chr15:3,153,628...3,172,988
JBrowse link
G PPIG peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr36:14,306,458...14,357,757
Ensembl chr36:14,307,160...14,353,412
JBrowse link
G PPIH peptidylprolyl isomerase H ISO RGD PMID:18544344 RGD:9686376 NCBI chr15:671,323...689,627
Ensembl chr15:671,324...689,544
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr12:5,916,524...5,936,276
Ensembl chr12:5,917,228...5,942,943
JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr26:30,939,556...30,966,210
Ensembl chr26:30,939,628...30,964,880
JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr37:10,067,208...10,082,827
Ensembl chr37:10,054,237...10,082,759
JBrowse link
G PRPF18 pre-mRNA processing factor 18 ISO RGD PMID:24452469 RGD:9686092 NCBI chr 2:22,868,184...22,922,647 JBrowse link
G PRPF19 pre-mRNA processing factor 19 ISO RGD PMID:23742842 RGD:9686094 NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240
JBrowse link
G PRPF3 pre-mRNA processing factor 3 ISO RGD PMID:19239890 RGD:9686089 NCBI chr17:59,552,227...59,577,027
Ensembl chr17:59,552,340...59,577,009
JBrowse link
G PRPF31 pre-mRNA processing factor 31 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:103,073,359...103,090,652
Ensembl chr 1:103,073,380...103,090,652
JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 ISO RGD PMID:19239890 RGD:9686089 NCBI chr11:67,641,332...67,659,070
Ensembl chr11:67,641,459...67,657,870
JBrowse link
G PRPF6 pre-mRNA processing factor 6 ISO RGD PMID:19239890 RGD:9686089 NCBI chr24:47,439,210...47,483,531
Ensembl chr24:47,433,130...47,483,522
JBrowse link
G PRPF8 pre-mRNA processing factor 8 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 9:45,797,882...45,827,365
Ensembl chr 9:45,797,959...45,828,071
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr20:57,806,450...57,818,435
Ensembl chr20:57,807,826...57,818,359
JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 6:52,870,944...52,948,673
Ensembl chr 6:52,872,310...52,949,025
JBrowse link
G QKI QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714
JBrowse link
G RBM22 RNA binding motif protein 22 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:58,460,805...58,470,411
Ensembl chr 4:58,460,847...58,469,762
JBrowse link
G RBM8A RNA binding motif protein 8A ISO RGD PMID:15145352 RGD:9686404 NCBI chr17:58,722,449...58,726,017
Ensembl chr17:58,724,227...58,725,969
JBrowse link
G RBMX RNA binding motif protein X-linked ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr  X:107,173,599...107,182,404
Ensembl chr  X:107,175,634...107,182,347
JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr 6:38,719,713...38,729,437
Ensembl chr 6:38,719,792...38,728,773
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link
G SF1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:52,380,058...52,393,833
Ensembl chr18:52,380,211...52,393,048
JBrowse link
G SF3A1 splicing factor 3a subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr26:23,485,551...23,504,242
Ensembl chr26:23,485,797...23,504,346
JBrowse link
G SF3A2 splicing factor 3a subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:56,789,450...56,796,004
Ensembl chr20:56,788,577...56,795,262
JBrowse link
G SF3A3 splicing factor 3a subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr15:4,595,812...4,620,565 JBrowse link
G SF3B1 splicing factor 3b subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr37:6,922,150...6,962,474
Ensembl chr37:6,924,047...6,962,896
JBrowse link
G SF3B2 splicing factor 3b subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr18:51,197,924...51,212,397
Ensembl chr18:51,197,939...51,212,354
JBrowse link
G SF3B3 splicing factor 3b subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:76,490,622...76,543,877
Ensembl chr 5:76,490,682...76,543,877
JBrowse link
G SF3B4 splicing factor 3b subunit 4 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:59,208,989...59,214,643
Ensembl chr17:59,208,990...59,213,991
JBrowse link
G SF3B5 splicing factor 3b subunit 5 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:35,558,249...35,558,998
Ensembl chr 1:35,558,599...35,558,859
JBrowse link
G SF3B6 splicing factor 3b subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:18,548,633...18,559,694
Ensembl chr17:18,548,622...18,704,161
JBrowse link
G SLU7 SLU7 homolog, splicing factor ISO RGD PMID:24452469 RGD:9686092 NCBI chr 4:50,314,063...50,328,999
Ensembl chr 4:50,314,086...50,327,733
JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr17:34,472,638...34,505,332
Ensembl chr17:34,472,767...34,505,333
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 1:107,340,484...107,356,280
Ensembl chr 1:107,113,974...107,356,241
JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A ISO RGD PMID:23592432 RGD:9686090 NCBI chr 1:113,018,268...113,030,827
Ensembl chr 1:113,018,304...113,030,734
JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:39,777,947...39,791,256
Ensembl chr 3:39,777,987...39,790,849
JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr24:18,673,975...18,683,315
Ensembl chr24:18,674,039...18,683,229
JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr24:6,106,217...6,117,369
Ensembl chr24:6,106,217...6,117,369
JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:3,996,483...4,010,904
Ensembl chr12:3,996,520...4,010,889
JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:66,407,313...66,421,193
Ensembl chr 7:66,407,313...66,421,194
JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:109,891,253...109,896,712
Ensembl chr 1:109,891,223...109,896,711
JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr26:28,247,878...28,263,519 JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr38:515,808...521,536
Ensembl chr38:515,860...521,535
JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr15:35,691,071...35,698,734 JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:68,826,250...68,836,755
Ensembl chr10:68,826,250...68,836,755
Ensembl chr10:68,826,250...68,836,755
JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 ISO RGD PMID:19239890 RGD:9686089 NCBI chr10:23,622,897...23,631,526
Ensembl chr10:23,618,293...23,631,004
JBrowse link
G SNW1 SNW domain containing 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 8:50,478,924...50,512,360
Ensembl chr 8:50,479,338...50,512,243
JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 ISO RGD PMID:15145352 PMID:17537823 RGD:9686091 RGD:9686404 NCBI chr 2:75,018,637...75,053,908
Ensembl chr 2:75,019,339...75,049,398
JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:38,291,847...38,310,624
Ensembl chr 6:38,291,842...38,393,924
JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr26:15,049,612...15,324,454
Ensembl chr26:15,057,392...15,318,325
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 9:32,692,517...32,696,325
Ensembl chr 9:32,694,073...32,696,285
JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:75,587,561...75,601,099
Ensembl chr 2:75,587,584...75,598,925
JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:75,473,794...75,495,860
Ensembl chr 6:75,464,957...75,492,103
JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr12:48,355,844...48,398,753
Ensembl chr12:48,358,285...48,374,072
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:4,028,414...4,032,371
Ensembl chr 9:4,028,482...4,030,793
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:5,677,879...5,686,220
Ensembl chr12:5,677,907...5,684,446
JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:71,418,626...71,434,140
Ensembl chr 2:71,394,037...71,471,997
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 8:43,514,048...43,519,019
Ensembl chr 8:43,514,076...43,518,481
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr24:31,217,190...31,222,852
Ensembl chr24:31,217,184...31,218,618
JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:30,809,743...30,816,269
Ensembl chr17:30,809,951...30,816,218
JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr26:16,363,275...16,369,699
Ensembl chr26:16,363,475...16,369,666
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr12:45,613,947...45,644,879
Ensembl chr12:45,618,234...45,644,778
JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr28:29,729,246...29,750,703
Ensembl chr28:29,731,950...29,750,229
JBrowse link
G TXNL4A thioredoxin like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:722,223...735,253
Ensembl chr 1:722,293...735,258
JBrowse link
G U2AF1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr31:37,263,265...37,276,710 JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:102,074,759...102,091,326
Ensembl chr 1:102,074,790...102,091,385
JBrowse link
G XAB2 XPA binding protein 2 ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:52,392,521...52,406,071
Ensembl chr20:52,392,566...52,405,997
JBrowse link
tRNA maturation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:25071838 RGD:9685342 NCBI chr18:38,528,700...38,531,899
Ensembl chr18:38,528,621...38,530,846
JBrowse link
G ELAC1 elaC ribonuclease Z 1 ISO RGD PMID:21572561 RGD:9685334 NCBI chr 1:23,931,360...23,971,516
Ensembl chr 1:23,960,723...23,969,405
JBrowse link
G ELAC2 elaC ribonuclease Z 2 ISO RGD PMID:21572561 RGD:9685334 NCBI chr 5:36,957,901...36,978,646
Ensembl chr 5:36,958,264...36,978,606
JBrowse link
G POP1 POP1 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr13:361,095...398,214
Ensembl chr13:361,157...396,628
JBrowse link
G POP4 POP4 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr 1:121,809,448...121,815,811
Ensembl chr 1:121,809,701...121,815,443
JBrowse link
G POP5 POP5 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr26:16,463,006...16,465,359
Ensembl chr26:16,462,994...16,465,221
JBrowse link
G POP7 POP7 homolog, ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr 6:9,005,622...9,017,245
Ensembl chr 6:9,005,892...9,006,314
JBrowse link
G RPP14 ribonuclease P/MRP subunit p14 ISO RGD PMID:19931535 RGD:9685326 NCBI chr20:32,282,225...32,290,576
Ensembl chr20:32,282,449...32,289,060
JBrowse link
G RPP21 ribonuclease P/MRP subunit p21 ISO RGD PMID:19931535 RGD:9685326 NCBI chr12:332,003...333,807
Ensembl chr12:332,079...333,806
Ensembl chr12:332,079...333,806
JBrowse link
G RPP25 ribonuclease P and MRP subunit p25 ISO RGD PMID:19931535 RGD:9685326 NCBI chr30:37,987,516...37,988,991
Ensembl chr30:37,988,169...37,988,768
JBrowse link
G RPP30 ribonuclease P/MRP subunit p30 ISO RGD PMID:19931535 RGD:9685326 NCBI chr28:5,535,257...5,563,820
Ensembl chr28:5,535,709...5,562,502
JBrowse link
G RPP38 ribonuclease P/MRP subunit p38 ISO RGD PMID:19931535 RGD:9685326 NCBI chr 2:21,612,114...21,617,371
Ensembl chr 2:21,612,200...21,614,485
JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 ISO RGD PMID:19931535 RGD:9685326 NCBI chr35:5,109,324...5,119,713
Ensembl chr35:5,109,658...5,120,294
JBrowse link
G RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase ISO RGD PMID:25071838 RGD:9685342 NCBI chr10:31,010,841...31,034,208
Ensembl chr10:31,010,878...31,033,229
JBrowse link
G SSB small RNA binding exonuclease protection factor La ISO RGD PMID:21572561 RGD:9685334 NCBI chr36:14,465,088...14,476,786
Ensembl chr36:14,465,129...14,476,609
JBrowse link
G TSEN15 tRNA splicing endonuclease subunit 15 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 7:17,356,210...17,441,212
Ensembl chr 7:17,356,909...17,405,808
JBrowse link
G TSEN2 tRNA splicing endonuclease subunit 2 ISO RGD PMID:25071838 RGD:9685342 NCBI chr20:6,031,295...6,090,938
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G TSEN34 tRNA splicing endonuclease subunit 34 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 1:103,021,519...103,027,460
Ensembl chr 1:103,021,525...103,026,643
JBrowse link
G TSEN54 tRNA splicing endonuclease subunit 54 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 9:5,009,468...5,016,513
Ensembl chr 9:5,009,468...5,016,483
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4047
    regulatory pathway 2499
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1332
        transcription pathway 926
          RNA polymerase transcription pathway 349
            eukaryotic RNA polymerase transcription pathway + 349
            prokaryotic RNA polymerase transcription pathway 0
paths to the root