oxidative phosphorylation pathway - Ontology Report - Rat Genome Database

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PATHWAY ONTOLOGY - ANNOTATIONS	{{ watchLinkText }}
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:	oxidative phosphorylation pathway	go back to main search page
Accession:	PW:0001059	browse the term
Definition:	Oxidative phosphorylation is the coupling of the electron transport chain and the ATP biosynthetic pathways. The electron transfer chain generates an electrochemical gradient that drives the phosphorylation of ADP. Under certain circumstances the two may be uncoupled.
Synonyms:	related_synonym:	oxidative phosphorylation

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Genes (21)

electron transport chain pathway

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

ATP synthase F1 subunit alpha

SMP:00355

NCBI chr 1:95,738,789...95,750,835
Ensembl chr 1:95,733,090...95,750,841

G

ATP synthase F1 subunit beta

SMP:00355

NCBI chr 5:21,984,750...21,992,393
Ensembl chr 5:21,984,580...21,992,407

G

ATP synthase F1 subunit gamma

SMP:00355

NCBI chr10:63,584,288...63,599,537
Ensembl chr10:63,583,695...63,599,453

G

ATP synthase F1 subunit delta

SMP:00355

NCBI chr 2:77,216,430...77,219,301
Ensembl chr 2:77,216,436...77,222,632

G

ATP synthase F1 subunit epsilon

SMP:00355

NCBI chr17:59,163,085...59,174,488

G

ATP synthase membrane subunit c locus 2

SMP:00355

NCBI chr 5:18,871,025...18,879,933
Ensembl chr 5:18,871,026...18,879,609

G

ATP synthase peripheral stalk-membrane subunit b

SMP:00355

NCBI chr 4:108,896,063...108,907,626
Ensembl chr 4:108,896,057...108,907,805

G

cytochrome c, somatic

SMP:00355

NCBI chr18:47,169,921...47,172,212
Ensembl chr18:47,169,866...47,173,866

G

glyceraldehyde-3-phosphate dehydrogenase

SMP:00355

NCBI chr 5:64,129,678...64,135,194
Ensembl chr 5:64,129,679...64,133,991

G

glycerol-3-phosphate dehydrogenase 1

SMP:00355

NCBI chr 5:16,008,179...16,021,676
Ensembl chr 5:16,007,448...16,017,825

G

glycerol-3-phosphate dehydrogenase 2

SMP:00355

NCBI chr15:63,592,723...63,728,636
Ensembl chr15:63,619,762...63,728,633

G

mitochondrially encoded ATP synthase membrane subunit 6

SMP:00355

NCBI chr MT:9,120...9,800
Ensembl chr MT:9,120...9,800

G

mitochondrially encoded cytochrome c oxidase I

SMP:00355

NCBI chr MT:6,511...8,055
Ensembl chr MT:6,511...8,055

G

NADH:ubiquinone oxidoreductase subunit A1

SMP:00355

NCBI chr X:98,219,717...98,223,873
Ensembl chr X:98,219,988...98,223,868

G

succinate dehydrogenase complex flavoprotein subunit A

RGD:2306881 SMP:00355

NCBI chr16:79,838,442...79,862,956
Ensembl chr16:79,834,044...79,862,524

G

succinate dehydrogenase complex iron sulfur subunit B

RGD:2306881 SMP:00355

NCBI chr 6:75,648,362...75,678,111
Ensembl chr 6:75,648,215...75,678,378

G

succinate dehydrogenase complex subunit C

RGD:2306881 SMP:00355

NCBI chr 4:89,135,410...89,169,164
Ensembl chr 4:89,130,379...89,169,118

G

succinate dehydrogenase complex subunit D

PMID:15572694 PMID:16143825

RGD:1580035 RGD:2306881 SMP:00355

NCBI chr 9:39,790,654...39,803,602
Ensembl chr 9:39,790,595...39,803,950

G

solute carrier family 25 member 4

SMP:00355

NCBI chr15:46,193,498...46,197,989
Ensembl chr15:46,193,746...46,200,987

G

solute carrier family 37 member 4

SMP:00355

NCBI chr 9:46,247,278...46,254,068
Ensembl chr 9:46,247,284...46,254,031

G

ubiquinol-cytochrome c reductase core protein 1

SMP:00355

NCBI chr13:31,298,449...31,308,719
Ensembl chr13:31,298,449...31,309,516

Term paths to the root

Path 1
Term	Annotations
pathway	4047
classic metabolic pathway	1013
energy metabolic pathway	43
oxidative phosphorylation pathway	21
ATP biosynthetic pathway	0
electron transport chain pathway	21
Path 2
Term	Annotations
pathway	4047
regulatory pathway	2501
homeostasis pathway	1301
energy homeostasis pathway	237
oxidative phosphorylation pathway	21
ATP biosynthetic pathway	0
electron transport chain pathway	21

paths to the root