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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:oxidative phosphorylation pathway
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Accession:PW:0001059 term browser browse the term
Definition:Oxidative phosphorylation is the coupling of the electron transport chain and the ATP biosynthetic pathways. The electron transfer chain generates an electrochemical gradient that drives the phosphorylation of ADP. Under certain circumstances the two may be uncoupled.
Synonyms:related_synonym: oxidative phosphorylation

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electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chrNW_004955402:31,652,226...31,662,114
Ensembl chrNW_004955402:31,651,960...31,662,762 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chrNW_004955458:4,188,167...4,195,575
Ensembl chrNW_004955458:4,186,461...4,195,494 		JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chrNW_004955421:24,234,473...24,253,640
Ensembl chrNW_004955421:24,234,413...24,253,640 		JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO SMPDB SMP:00355 NCBI chrNW_004955495:6,664,394...6,666,693
Ensembl chrNW_004955495:6,664,394...6,666,693 		JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chrNW_004955445:563,642...567,865
Ensembl chrNW_004955445:563,315...567,865 		JBrowse link
G Atp5mc2 ATP synthase membrane subunit c locus 2 ISO SMPDB SMP:00355 NCBI chrNW_004955458:952,817...960,963
Ensembl chrNW_004955458:952,817...959,962 		JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO SMPDB SMP:00355 NCBI chrNW_004955435:14,940,502...14,952,423
Ensembl chrNW_004955435:14,940,434...14,954,310 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chrNW_004955413:4,162,467...4,166,783
Ensembl chrNW_004955413:4,162,467...4,166,783 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chrNW_004955547:676,661...683,906
Ensembl chrNW_004955547:676,342...690,777 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chrNW_004955449:16,695,855...16,804,184
Ensembl chrNW_004955449:16,695,435...16,802,908 		JBrowse link
G LOC102005965 cytochrome b-c1 complex subunit 1, mitochondrial ISO SMPDB SMP:00355 NCBI chrNW_004955532:685,315...691,286
Ensembl chrNW_004955532:685,395...696,554 		JBrowse link
G LOC102023786 cytochrome c, somatic ISO SMPDB SMP:00355 NCBI chrNW_004955410:27,086,405...27,089,255
Ensembl chrNW_004955410:27,086,405...27,089,255 		JBrowse link
G Ndufa1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chrNW_004955534:152,291...154,183
Ensembl chrNW_004955534:152,300...154,183 		JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955504:36,939...66,507
Ensembl chrNW_004955504:36,911...70,494 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955527:1,769,280...1,792,496
Ensembl chrNW_004955527:1,768,940...1,792,361 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955468:13,050,359...13,083,932
Ensembl chrNW_004955468:13,049,848...13,083,156 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD
SMPDB		 PMID:15572694 PMID:16143825 RGD:1580035 RGD:2306881 SMP:00355 NCBI chrNW_004955412:13,768,501...13,778,944
Ensembl chrNW_004955412:13,768,501...13,778,932 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004955403:23,878,329...23,882,322
Ensembl chrNW_004955403:23,878,329...23,882,322 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004955412:20,133,652...20,140,134
Ensembl chrNW_004955412:20,133,652...20,139,542 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3930
    classic metabolic pathway 967
      energy metabolic pathway 41
        oxidative phosphorylation pathway 19
          ATP biosynthetic pathway 0
          electron transport chain pathway 19
Path 2
Term Annotations click to browse term
  pathway 3930
    regulatory pathway 2444
      homeostasis pathway 1271
        energy homeostasis pathway 233
          oxidative phosphorylation pathway 19
            ATP biosynthetic pathway 0
            electron transport chain pathway 19
paths to the root