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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:oxidative phosphorylation pathway
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Accession:PW:0001059 term browser browse the term
Definition:Oxidative phosphorylation is the coupling of the electron transport chain and the ATP biosynthetic pathways. The electron transfer chain generates an electrochemical gradient that drives the phosphorylation of ADP. Under certain circumstances the two may be uncoupled.
Synonyms:related_synonym: oxidative phosphorylation


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electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5F1A ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chr18:39,366,384...39,380,514
Ensembl chr18:42,904,136...42,923,326 		JBrowse link
G ATP5F1B ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chr12:32,264,570...32,272,419
Ensembl chr12:32,519,749...32,527,753 		JBrowse link
G ATP5F1C ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chr10:7,820,874...7,840,581
Ensembl chr10:7,801,438...7,821,088 		JBrowse link
G ATP5F1D ATP synthase F1 subunit delta ISO SMPDB SMP:00355
G ATP5F1E ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chr20:55,379,615...55,383,316
Ensembl chr20:56,740,739...56,744,431 		JBrowse link
G ATP5MC2 ATP synthase membrane subunit c locus 2 ISO SMPDB SMP:00355 NCBI chr12:35,078,290...35,089,480 JBrowse link
G ATP5PB ATP synthase peripheral stalk-membrane subunit b ISO SMPDB SMP:00355 NCBI chr 1:114,110,749...114,122,715
Ensembl chr 1:126,224,725...126,235,897 		JBrowse link
G GAPDH glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chr12:6,665,218...6,669,170
Ensembl chr12:6,583,895...6,587,729 		JBrowse link
G GPD1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chr12:38,644,466...38,651,924
Ensembl chr12:39,541,550...39,549,040 		JBrowse link
G GPD2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chr2B:43,694,744...43,845,764
Ensembl chr2B:160,938,514...161,117,320 		JBrowse link
G LOC100977575 cytochrome b-c1 complex subunit 1, mitochondrial ISO SMPDB SMP:00355 NCBI chr 3:48,520,870...48,531,947
Ensembl chr 3:49,602,770...49,613,717 		JBrowse link
G LOC100986481 cytochrome c ISO SMPDB SMP:00355 NCBI chr 7:25,784,900...25,791,598
Ensembl chr 7:25,396,013...25,398,549 		JBrowse link
G NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chr  X:108,935,315...108,940,237
Ensembl chr  X:119,330,105...119,334,963 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr 1:15,962,383...15,998,056
Ensembl chr 1:17,018,542...17,054,509 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr 1:136,724,663...136,773,038
Ensembl chr 1:140,635,685...140,682,736 		JBrowse link
G SLC25A4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chr 4:177,310,982...177,315,016
Ensembl chr 4:189,531,914...189,534,549 		JBrowse link
G SLC37A4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chr11:113,862,537...113,869,447
Ensembl chr11:117,792,700...117,799,269 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4059
    classic metabolic pathway 1014
      energy metabolic pathway 39
        oxidative phosphorylation pathway 17
          ATP biosynthetic pathway 0
          electron transport chain pathway 17
Path 2
Term Annotations click to browse term
  pathway 4059
    regulatory pathway 2512
      homeostasis pathway 1301
        energy homeostasis pathway 231
          oxidative phosphorylation pathway 17
            ATP biosynthetic pathway 0
            electron transport chain pathway 17
paths to the root