PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: altered transcription pathway
Accession: PW:0000807
browse the term
Definition: A transcription pathway that deviates from what its normal course should be. Aberrant transcription can have devastating consequences. Altered signaling mediated by various transcription factors has been implicated in a spectrum of human diseases.
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Ar
androgen receptor
ISO
RGD
PMID:18008377 PMID:23759327
RGD:2326139 , RGD:8693397
NCBI chr X:67,135,317...67,304,476
Ensembl chr X:63,104,771...63,273,925
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Ncoa2
nuclear receptor coactivator 2
ISO
RGD
PMID:23759327
RGD:8693397
NCBI chr 5:10,618,712...10,852,776
Ensembl chr 5:5,835,706...6,067,451
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Ncor2
nuclear receptor co-repressor 2
ISO
RGD
PMID:23759327
RGD:8693397
NCBI chr12:37,127,736...37,289,612
Ensembl chr12:31,466,412...31,628,319
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Vhl
von Hippel-Lindau tumor suppressor
ISO
RGD
PMID:22035299
RGD:6907133
NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377
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Ets1
ETS proto-oncogene 1, transcription factor
ISO
RGD
PMID:22713868
RGD:8663430
NCBI chr 8:39,303,936...39,426,022
Ensembl chr 8:31,045,945...31,168,010
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Mdm2
MDM2 proto-oncogene
ISO
RGD
PMID:19165225 PMID:23262034
RGD:2316186 , RGD:8663434
NCBI chr 7:55,176,558...55,201,757
Ensembl chr 7:53,290,664...53,314,915
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Mdm4
MDM4 regulator of p53
ISO
RGD
PMID:23262034
RGD:8663434
NCBI chr13:46,922,236...47,068,241
Ensembl chr13:44,406,213...44,474,226
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Mre11
MRE11 homolog, double strand break repair nuclease
ISO
RGD
PMID:23263379
RGD:8663431
NCBI chr 8:19,900,211...19,961,906
Ensembl chr 8:11,632,354...11,678,279
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Nfya
nuclear transcription factor Y subunit alpha
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr 9:20,085,067...20,111,521
Ensembl chr 9:12,586,259...12,613,898
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Nfyb
nuclear transcription factor Y subunit beta
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr 7:22,852,543...22,868,116
Ensembl chr 7:20,964,993...20,980,565
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Nfyc
nuclear transcription factor Y subunit gamma
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr 5:139,622,020...139,690,545
Ensembl chr 5:134,336,808...134,405,377
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Pin1
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
ISO
RGD
PMID:22713868
RGD:8663430
NCBI chr 8:27,465,538...27,477,016
Ensembl chr 8:19,189,373...19,200,785
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Srebf2
sterol regulatory element binding transcription factor 2
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr 7:115,542,774...115,600,945
Ensembl chr 7:113,663,202...113,720,848
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Tp53
tumor protein p53
ISO
DNA:mutations:exon
RGD
PMID:19165225 PMID:23759327 PMID:22713868 PMID:23263379 PMID:18772397 PMID:20951313 PMID:19078924 More...
RGD:2316186 , RGD:8693397 , RGD:8663430 , RGD:8663431 , RGD:5490966 , RGD:5133242 , RGD:4143515
NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
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Tp63
tumor protein p63
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398
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Tp73
tumor protein p73
ISO
RGD
PMID:23263379 PMID:22713868
RGD:8663431 , RGD:8663430
NCBI chr 5:169,903,801...169,988,075
Ensembl chr 5:164,621,377...164,681,128
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Vdr
vitamin D receptor
ISO
RGD
PMID:22713868
RGD:8663430
NCBI chr 7:130,864,764...130,916,757
Ensembl chr 7:128,987,981...129,037,677
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all