PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: altered glycoconjugated protein signaling pathway
Accession: PW:0000670
browse the term
Definition: A glycoconjugated protein signaling pathway that deviates from what its normal course should be.
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Dll1
delta like canonical Notch ligand 1
ISS
paper on the human protein which may be involved in disease
RGD
PMID:10079256
RGD:1304492
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
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Dll3
delta like canonical Notch ligand 3
ISS
paper mentions mutations and diseases, deletion in mice
RGD
PMID:12141422
RGD:1304493
NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
ISS
RGD
PMID:12548545
RGD:1334460
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
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Jag1
jagged canonical Notch ligand 1
ISS
RGD
PMID:10964583
RGD:1304484
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
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Jag2
jagged canonical Notch ligand 2
ISS
RGD
PMID:10079256
RGD:1304492
NCBI chr 6:131,983,059...132,005,665
Ensembl chr 6:131,983,056...132,005,818
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Notch1
notch receptor 1
ISS
RGD
PMID:11900468
RGD:724389
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Notch4
notch receptor 4
ISS
RGD
PMID:10964583
RGD:1304484
NCBI chr20:4,160,362...4,184,466
Ensembl chr20:4,160,445...4,184,465
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Numb
NUMB, endocytic adaptor protein
ISS
RGD
PMID:15492044
RGD:1334451
NCBI chr 6:103,431,400...103,553,422
Ensembl chr 6:103,431,400...103,553,354
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Pofut1
protein O-fucosyltransferase 1
ISS
RGD
PMID:14570055
RGD:1334453
NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
ISS
RGD
PMID:12548545
RGD:1334460
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
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Numb
NUMB, endocytic adaptor protein
ISS
In humans, loss of Numb regulation over Notch is involved in breast cancer.
RGD
PMID:15492044
RGD:1334451
NCBI chr 6:103,431,400...103,553,422
Ensembl chr 6:103,431,400...103,553,354
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Pofut1
protein O-fucosyltransferase 1
ISS
RGD
PMID:14570055
RGD:1334453
NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786
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Psen2
presenilin 2
ISO
C. elegans transgenics expressing human wild-type and mutant PSEN2
RGD
PMID:16474849
RGD:2302525
NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174
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Dll3
delta like canonical Notch ligand 3
ISS
RGD
PMID:12141422
RGD:1304493
NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750
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Jag1
jagged canonical Notch ligand 1
ISS
RGD
PMID:15057910
RGD:1334443
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
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Notch1
notch receptor 1
ISS
RGD
PMID:15472075
RGD:1334450
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Notch3
notch receptor 3
ISS
RGD
PMID:14667809
RGD:1334442
NCBI chr 7:11,132,984...11,184,025
Ensembl chr 7:11,133,706...11,184,025
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Dab1
DAB adaptor protein 1
TAS
RGD
PMID:12670697
RGD:727518
NCBI chr 5:118,392,953...119,513,625
Ensembl chr 5:119,140,533...119,510,552
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Fyn
FYN proto-oncogene, Src family tyrosine kinase
ISO
RGD
PMID:12778121
RGD:2324970
NCBI chr20:42,767,733...42,960,903
Ensembl chr20:42,766,369...42,959,911
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Itga3
integrin subunit alpha 3
ISO
RGD
PMID:15583703
RGD:2325851
NCBI chr10:79,990,160...80,022,206
Ensembl chr10:79,990,161...80,022,118
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Itgb1
integrin subunit beta 1
ISO
RGD
PMID:15583703
RGD:2325851
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
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Lrp8
LDL receptor related protein 8
ISO
RGD
PMID:19846452
RGD:2324974
NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352
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Pafah1b1
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
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Pafah1b2
platelet-activating factor acetylhydrolase 1b, catalytic subunit 2
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr 8:46,260,069...46,312,073
Ensembl chr 8:46,261,064...46,279,833
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Pafah1b3
platelet-activating factor acetylhydrolase 1b, catalytic subunit 3
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr 1:80,881,263...80,883,789
Ensembl chr 1:80,881,309...80,883,893
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Reln
reelin
TAS
RGD
PMID:12670697
RGD:727518
NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211
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Src
SRC proto-oncogene, non-receptor tyrosine kinase
ISO
RGD
PMID:18237558
RGD:2325284
NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
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Vldlr
very low density lipoprotein receptor
ISS
RGD
PMID:12764038
RGD:1358468
NCBI chr 1:224,813,539...224,850,400
Ensembl chr 1:224,814,377...224,845,920
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Apc
APC regulator of WNT signaling pathway
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
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Axin1
axin 1
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615
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Axin2
axin 2
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
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Ctnnb1
catenin beta 1
ISO
RGD
PMID:18432252 PMID:19078924
RGD:2293188 , RGD:4143515
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Lrp5
LDL receptor related protein 5
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
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Map3k1
mitogen-activated protein kinase kinase kinase 1
IMP
RGD
PMID:20128690
RGD:150573713
NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
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Tcf7l2
transcription factor 7 like 2
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
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Wnt9a
Wnt family member 9A
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all