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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:cell adhesion signaling pathway
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Accession:PW:0000648 term browser browse the term
Definition:Cell adhesion signaling pathway conveys information between cells or between cells and the extracellular matrix (ECM) using cell adhesion molecules (CAMs). While many CAMs appear to be specialized for either cell-cell or cell-ECM communication, integrin family of receptors mediates both types of signaling.


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altered ephrin - ephrin receptor bidirectional signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 ISS Present in gastrointestinal, liver and kidney cancers. RGD PMID:15561600 RGD:1304509 NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:176,979,434...176,988,726 		JBrowse link
G Efna2 ephrin A2 ISS RGD PMID:15561600 RGD:1304509 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:10,167,091...10,177,719 		JBrowse link
G Efna3 ephrin A3 ISS Present in neurobalstoma, neural cancers and leukemia. RGD PMID:15561600 RGD:1304509 NCBI chr 2:177,026,928...177,035,838
Ensembl chr 2:177,026,933...177,044,843 		JBrowse link
G Efnb1 ephrin B1 ISS Present in neuroblastoma, leukemia and lung cancer RGD PMID:15561600 RGD:1304509 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:68,297,492...68,349,546 		JBrowse link
G Efnb3 ephrin B3 ISS Present in neuroblastomas and neural cancers RGD PMID:15561600 RGD:1304509 NCBI chr10:54,773,282...54,780,727
Ensembl chr10:54,773,282...54,797,651 		JBrowse link
G Epha3 Eph receptor A3 ISS Present in neuroblastomas, neural cancers, leukemias and lymphomas. RGD PMID:15561600 RGD:1304509 NCBI chr11:14,585,041...14,920,721
Ensembl chr11:14,586,727...14,920,425 		JBrowse link
G Epha7 Eph receptor A7 ISS RGD PMID:15561600 RGD:1304509 NCBI chr 5:47,771,776...47,925,189
Ensembl chr 5:47,771,865...47,925,058 		JBrowse link
altered integrin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilk integrin-linked kinase ISO RGD PMID:18772397 RGD:5490966 NCBI chr 1:169,500,716...169,506,972
Ensembl chr 1:169,498,681...169,506,964 		JBrowse link
G Itga1 integrin subunit alpha 1 IMP RGD PMID:10536667 RGD:1302875 NCBI chr 2:48,379,181...48,545,336
Ensembl chr 2:48,386,249...48,545,284 		JBrowse link
G Itga11 integrin subunit alpha 11 ISO RGD PMID:18772397 RGD:5490966 NCBI chr 8:72,041,432...72,150,137
Ensembl chr 8:72,016,652...72,150,137 		JBrowse link
G Itga4 integrin subunit alpha 4 IMP
ISO 		RGD PMID:11782963 PMID:18772397 RGD:1302879, RGD:5490966 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:84,560,369...84,641,039 		JBrowse link
G Itga5 integrin subunit alpha 5 ISS RGD PMID:10536667 RGD:1302875 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itga8 integrin subunit alpha 8 ISO RGD PMID:9054500 RGD:40903006 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:80,213,143...80,410,633 		JBrowse link
G Itga9 integrin subunit alpha 9 ISO RGD PMID:18772397 RGD:5490966 NCBI chr 8:127,185,244...127,493,296
Ensembl chr 8:127,169,226...127,493,296 		JBrowse link
G Itgb1 integrin subunit beta 1 ISS RGD PMID:9633916 RGD:1302874 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
altered Notch signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 ISS paper on the human protein which may be involved in disease RGD PMID:10079256 RGD:1304492 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 ISS paper mentions mutations and diseases, deletion in mice RGD PMID:12141422 RGD:1304493 NCBI chr 1:92,689,577...92,698,125
Ensembl chr 1:92,689,577...92,697,406 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISS RGD PMID:12548545 RGD:1334460 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:95,002,943...95,007,624 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISS RGD PMID:10964583 RGD:1304484 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:144,859,453...144,894,872 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISS RGD PMID:10079256 RGD:1304492 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:137,804,133...137,826,738 		JBrowse link
G Notch1 notch receptor 1 ISS RGD PMID:11900468 RGD:724389 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Notch4 notch receptor 4 ISS RGD PMID:10964583 RGD:1304484 NCBI chr20:4,164,969...4,189,072
Ensembl chr20:4,161,730...4,189,072 		JBrowse link
G Numb NUMB, endocytic adaptor protein ISS RGD PMID:15492044 RGD:1334451 NCBI chr 6:109,162,499...109,284,527
Ensembl chr 6:109,162,499...109,284,463 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISS RGD PMID:14570055 RGD:1334453 NCBI chr 3:162,168,855...162,195,798
Ensembl chr 3:162,168,606...162,195,018 		JBrowse link
altered Notch signaling pathway involving promoters term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISS RGD PMID:12548545 RGD:1334460 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:95,002,943...95,007,624 		JBrowse link
altered Notch signaling pathway involving the macromolecules modifying the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Numb NUMB, endocytic adaptor protein ISS In humans, loss of Numb regulation over Notch is involved in breast cancer. RGD PMID:15492044 RGD:1334451 NCBI chr 6:109,162,499...109,284,527
Ensembl chr 6:109,162,499...109,284,463 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISS RGD PMID:14570055 RGD:1334453 NCBI chr 3:162,168,855...162,195,798
Ensembl chr 3:162,168,606...162,195,018 		JBrowse link
G Psen2 presenilin 2 ISO C. elegans transgenics expressing human wild-type and mutant PSEN2 RGD PMID:16474849 RGD:2302525 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:94,499,928...94,525,116 		JBrowse link
altered Notch signaling pathway involving the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll3 delta like canonical Notch ligand 3 ISS RGD PMID:12141422 RGD:1304493 NCBI chr 1:92,689,577...92,698,125
Ensembl chr 1:92,689,577...92,697,406 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISS RGD PMID:15057910 RGD:1334443 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:144,859,453...144,894,872 		JBrowse link
G Notch1 notch receptor 1 ISS RGD PMID:15472075 RGD:1334450 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Notch3 notch receptor 3 ISS RGD PMID:14667809 RGD:1334442 NCBI chr 7:11,783,550...11,834,585
Ensembl chr 7:11,784,272...11,834,778 		JBrowse link
cadherin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh2 cadherin 2 IMP RGD PMID:16515795 RGD:1582675 NCBI chr18:8,051,097...8,265,288
Ensembl chr18:8,051,097...8,265,288 		JBrowse link
cell-extracellular matrix signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrn agrin IEA KEGG rno:04512 NCBI chr 5:172,031,528...172,064,429
Ensembl chr 5:172,031,528...172,064,539 		JBrowse link
G Cd36 CD36 molecule IEA KEGG rno:04512 NCBI chr 4:18,209,088...18,302,142 JBrowse link
G Cd36l1 CD36 molecule like 1 IEA KEGG rno:04512 NCBI chr 4:18,316,806...18,357,863
Ensembl chr 4:18,261,059...18,405,365 		JBrowse link
G Cd44 CD44 molecule IEA KEGG rno:04512 NCBI chr 3:109,610,824...109,699,776
Ensembl chr 3:109,612,054...109,699,424 		JBrowse link
G Cd47 Cd47 molecule IEA KEGG rno:04512 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:64,377,926...64,438,272 		JBrowse link
G Chad chondroadherin IEA KEGG rno:04512 NCBI chr10:80,009,045...80,012,816
Ensembl chr10:80,008,767...80,012,816 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain IEA KEGG rno:04512 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain IEA KEGG rno:04512 NCBI chr20:4,788,829...4,818,492
Ensembl chr20:4,788,829...4,817,648 		JBrowse link
G Col1a1 collagen type I alpha 1 chain IEA KEGG rno:04512 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Col1a2 collagen type I alpha 2 chain IEA KEGG rno:04512 NCBI chr 4:33,518,557...33,553,484
Ensembl chr 4:33,518,420...33,553,995 		JBrowse link
G Col2a1 collagen type II alpha 1 chain IEA KEGG rno:04512 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Col3a1 collagen type III alpha 1 chain IEA KEGG rno:04512 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:54,866,632...54,903,232 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain IEA KEGG rno:04512 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:84,885,597...84,996,482 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain IEA KEGG rno:04512 NCBI chr16:84,749,672...84,885,520
Ensembl chr16:84,749,672...84,885,520 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain IEA KEGG rno:04512 NCBI chr  X:109,907,251...110,111,214
Ensembl chr  X:109,907,346...110,111,214 		JBrowse link
G Col5a1 collagen type V alpha 1 chain IEA KEGG rno:04512 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:31,606,486...31,753,020 		JBrowse link
G Col5a2 collagen type V alpha 2 chain IEA KEGG rno:04512 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:54,940,764...55,090,150 		JBrowse link
G Col5a3 collagen type V alpha 3 chain IEA KEGG rno:04512 NCBI chr 8:27,580,768...27,626,002
Ensembl chr 8:27,580,768...27,626,122 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain IEA KEGG rno:04512 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,457...11,924,107 		JBrowse link
G Col6a2 collagen type VI alpha 2 chain IEA KEGG rno:04512 NCBI chr20:12,021,182...12,048,932
Ensembl chr20:12,021,265...12,057,042 		JBrowse link
G Col6a3 collagen type VI alpha 3 chain IEA KEGG rno:04512 NCBI chr 9:98,809,171...98,887,060
Ensembl chr 9:98,809,171...98,886,990 		JBrowse link
G Col6a6 collagen type VI alpha 6 chain IEA KEGG rno:04512 NCBI chr 8:115,196,833...115,352,161
Ensembl chr 8:115,197,464...115,352,136 		JBrowse link
G Comp cartilage oligomeric matrix protein IEA KEGG rno:04512 NCBI chr16:19,081,172...19,089,548
Ensembl chr16:19,081,172...19,089,605 		JBrowse link
G Dag1 dystroglycan 1 IEA KEGG rno:04512 NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:117,769,517...117,782,199 		JBrowse link
G Fn1 fibronectin 1 IEA KEGG rno:04512 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:80,645,507...80,714,137 		JBrowse link
G Gp1ba glycoprotein Ib platelet subunit alpha IEA KEGG rno:04512 NCBI chr10:55,831,901...55,856,729
Ensembl chr10:55,829,832...55,854,560 		JBrowse link
G Gp1bb glycoprotein Ib platelet subunit beta IEA KEGG rno:04512 NCBI chr11:95,882,561...95,883,738 JBrowse link
G Gp5 glycoprotein V (platelet) IEA KEGG rno:04512 NCBI chr11:83,948,507...83,952,362
Ensembl chr11:83,948,507...83,952,367 		JBrowse link
G Gp9 glycoprotein IX (platelet) IEA KEGG rno:04512 NCBI chr 4:121,792,842...121,794,452
Ensembl chr 4:121,792,653...121,794,475 		JBrowse link
G Hmmr hyaluronan-mediated motility receptor IEA KEGG rno:04512 NCBI chr10:25,635,249...25,665,389
Ensembl chr10:25,635,915...25,665,390 		JBrowse link
G Ibsp integrin-binding sialoprotein IEA KEGG rno:04512 NCBI chr14:5,744,497...5,757,242
Ensembl chr14:5,744,501...5,775,299 		JBrowse link
G Itga1 integrin subunit alpha 1 IEA KEGG rno:04512 NCBI chr 2:48,379,181...48,545,336
Ensembl chr 2:48,386,249...48,545,284 		JBrowse link
G Itga10 integrin subunit alpha 10 IEA KEGG rno:04512 NCBI chr 2:186,871,711...186,891,012
Ensembl chr 2:186,871,711...186,891,012 		JBrowse link
G Itga11 integrin subunit alpha 11 IEA KEGG rno:04512 NCBI chr 8:72,041,432...72,150,137
Ensembl chr 8:72,016,652...72,150,137 		JBrowse link
G Itga2 integrin subunit alpha 2 IEA KEGG rno:04512 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:48,253,412...48,354,509 		JBrowse link
G Itga2b integrin subunit alpha 2b IEA KEGG rno:04512 NCBI chr10:87,908,697...87,926,225
Ensembl chr10:87,908,697...87,925,833 		JBrowse link
G Itga4 integrin subunit alpha 4 IEA KEGG rno:04512 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:84,560,369...84,641,039 		JBrowse link
G Itga5 integrin subunit alpha 5 IEA KEGG rno:04512 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itga6 integrin subunit alpha 6 IEA KEGG rno:04512 NCBI chr 3:77,012,168...77,097,076
Ensembl chr 3:77,017,766...77,097,076 		JBrowse link
G Itga7 integrin subunit alpha 7 IEA KEGG rno:04512 NCBI chr 7:1,944,447...1,973,347
Ensembl chr 7:1,944,460...1,973,339 		JBrowse link
G Itga9 integrin subunit alpha 9 IEA KEGG rno:04512 NCBI chr 8:127,185,244...127,493,296
Ensembl chr 8:127,169,226...127,493,296 		JBrowse link
G Itgb1 integrin subunit beta 1 IEA KEGG rno:04512 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Itgb3 integrin subunit beta 3 IEA KEGG rno:04512 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:90,009,900...90,067,800 		JBrowse link
G Itgb4 integrin subunit beta 4 IEA KEGG rno:04512 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,705,587...101,741,932 		JBrowse link
G Itgb5 integrin subunit beta 5 IEA KEGG rno:04512 NCBI chr11:80,333,588...80,449,373
Ensembl chr11:80,333,590...80,449,373 		JBrowse link
G Itgb6 integrin subunit beta 6 IEA KEGG rno:04512 NCBI chr 3:65,454,964...65,579,179
Ensembl chr 3:65,456,713...65,530,333 		JBrowse link
G Itgb7 integrin subunit beta 7 IEA KEGG rno:04512 NCBI chr 7:135,225,962...135,243,522
Ensembl chr 7:135,226,555...135,243,597 		JBrowse link
G Itgb8 integrin subunit beta 8 IEA KEGG rno:04512 NCBI chr 6:146,267,982...146,351,245
Ensembl chr 6:146,165,484...146,351,245 		JBrowse link
G Lama1 laminin subunit alpha 1 IEA KEGG rno:04512 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:115,139,548...115,264,251 		JBrowse link
G Lama2 laminin subunit alpha 2 IEA KEGG rno:04512 NCBI chr 1:19,492,126...20,140,056
Ensembl chr 1:19,244,599...20,140,056 		JBrowse link
G Lama5 laminin subunit alpha 5 IEA KEGG rno:04512 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:187,647,904...187,696,173 		JBrowse link
G Lamb2 laminin subunit beta 2 IEA KEGG rno:04512 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:118,056,935...118,069,090 		JBrowse link
G Lamb3 laminin subunit beta 3 IEA KEGG rno:04512 NCBI chr13:107,362,514...107,404,081
Ensembl chr13:107,322,526...107,404,081 		JBrowse link
G Lamc1 laminin subunit gamma 1 IEA KEGG rno:04512 NCBI chr13:67,924,872...68,051,986
Ensembl chr13:67,924,872...68,051,986 		JBrowse link
G Lamc2 laminin subunit gamma 2 IEA KEGG rno:04512 NCBI chr13:67,835,199...67,894,694
Ensembl chr13:67,835,199...67,895,102 		JBrowse link
G Lamc3 laminin subunit gamma 3 IEA KEGG rno:04512 NCBI chr 3:35,562,989...35,624,460
Ensembl chr 3:35,562,713...35,624,460 		JBrowse link
G Reln reelin IEA KEGG rno:04512 NCBI chr 4:13,628,440...14,055,201
Ensembl chr 4:13,628,399...14,055,162 		JBrowse link
G Sdc1 syndecan 1 IEA KEGG rno:04512 NCBI chr 6:37,282,041...37,304,503
Ensembl chr 6:37,297,010...37,304,500 		JBrowse link
G Sdc2 syndecan 2 IEA KEGG rno:04512 NCBI chr 7:66,012,405...66,125,101
Ensembl chr 7:66,108,853...66,126,294 		JBrowse link
G Sdc3 syndecan 3 IEA KEGG rno:04512 NCBI chr 5:148,249,792...148,282,524
Ensembl chr 5:148,271,842...148,280,614 		JBrowse link
G Sdc4 syndecan 4 IEA KEGG rno:04512 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:173,574,239...173,593,670 		JBrowse link
G Spp1 secreted phosphoprotein 1 IEA KEGG rno:04512 NCBI chr14:5,613,569...5,620,695
Ensembl chr14:5,613,576...5,619,820 		JBrowse link
G Sv2a synaptic vesicle glycoprotein 2a IEA KEGG rno:04512 NCBI chr 2:186,430,363...186,446,161
Ensembl chr 2:186,430,345...186,448,065 		JBrowse link
G Sv2b synaptic vesicle glycoprotein 2b IEA KEGG rno:04512 NCBI chr 1:138,388,268...138,562,635
Ensembl chr 1:138,388,266...138,562,258 		JBrowse link
G Sv2c synaptic vesicle glycoprotein 2c IEA KEGG rno:04512 NCBI chr 2:28,967,631...29,163,168
Ensembl chr 2:28,964,582...29,163,168 		JBrowse link
G Thbs1 thrombospondin 1 IEA KEGG rno:04512 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:125,510,250...125,525,402 		JBrowse link
G Thbs2 thrombospondin 2 IEA KEGG rno:04512 NCBI chr 1:64,343,523...64,372,918
Ensembl chr 1:64,343,523...64,372,918 		JBrowse link
G Thbs4 thrombospondin 4 IEA KEGG rno:04512 NCBI chr 2:25,718,219...25,760,345
Ensembl chr 2:25,718,219...25,761,369 		JBrowse link
G Tnc tenascin C IEA KEGG rno:04512 NCBI chr 5:82,391,340...82,476,197
Ensembl chr 5:82,391,340...82,476,131 		JBrowse link
G Tnn tenascin N IEA KEGG rno:04512 NCBI chr13:74,852,586...74,919,789
Ensembl chr13:74,852,586...74,919,789 		JBrowse link
G Tnr tenascin R IEA KEGG rno:04512 NCBI chr13:74,285,141...74,706,174
Ensembl chr13:74,507,366...74,701,115 		JBrowse link
G Vtn vitronectin IEA KEGG rno:04512 NCBI chr10:63,892,782...63,895,862
Ensembl chr10:63,892,766...63,895,860 		JBrowse link
G Vwf von Willebrand factor IEA KEGG rno:04512 NCBI chr 4:160,042,900...160,177,757
Ensembl chr 4:160,047,982...160,177,757 		JBrowse link
connexin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 ISO RGD PMID:15381756 RGD:1580398 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:36,302,352...36,319,689 		JBrowse link
G Gja4 gap junction protein, alpha 4 ISO RGD PMID:15381756 RGD:1580398 NCBI chr 5:144,917,791...144,920,324
Ensembl chr 5:144,914,147...144,921,216 		JBrowse link
G Gja5 gap junction protein, alpha 5 ISO RGD PMID:15381756 RGD:1580398 NCBI chr 2:187,291,227...187,310,770
Ensembl chr 2:187,234,674...187,318,512 		JBrowse link
G Gjc1 gap junction protein, gamma 1 ISO RGD PMID:15381756 RGD:1580398 NCBI chr10:88,262,840...88,285,646
Ensembl chr10:88,249,489...88,285,853 		JBrowse link
E-cadherin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 ISO PID PID:200124 PID:200182 NCBI chr17:90,006,917...90,088,002
Ensembl chr17:90,006,925...90,087,827 		JBrowse link
G Actn1 actinin, alpha 1 ISO PID PID:200182 NCBI chr 6:104,731,485...104,826,312
Ensembl chr 6:104,731,485...104,826,172 		JBrowse link
G Ajuba ajuba LIM protein ISO PID PID:200147 NCBI chr15:31,989,796...32,000,042
Ensembl chr15:31,989,799...32,000,042 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200124 PID:200147 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO PID PID:200147 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:92,014,859...92,061,420 		JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 ISO PID PID:200124 NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,616,187...17,636,462 		JBrowse link
G Aqp3 aquaporin 3 (Gill blood group) ISO PID PID:200182 NCBI chr 5:61,035,165...61,040,683
Ensembl chr 5:61,035,166...61,040,685 		JBrowse link
G Aqp5 aquaporin 5 ISO PID PID:200182 NCBI chr 7:132,601,528...132,605,060
Ensembl chr 7:132,601,059...132,605,062 		JBrowse link
G Arf6 ARF GTPase 6 ISO PID PID:200124 PID:200182 NCBI chr 6:93,589,777...93,590,925
Ensembl chr 6:93,569,234...93,610,536 		JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 ISO PID PID:200182 NCBI chr12:6,440,959...6,464,582
Ensembl chr12:6,441,152...6,464,582 		JBrowse link
G Casr calcium-sensing receptor ISO PID PID:200147 NCBI chr11:77,738,398...77,813,639
Ensembl chr11:77,740,614...77,810,167 		JBrowse link
G Ccnd1 cyclin D1 ISO PID PID:200124 NCBI chr 1:209,518,288...209,527,986
Ensembl chr 1:209,518,288...209,527,810 		JBrowse link
G Cdc42 cell division cycle 42 ISO PID PID:200124 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:154,839,631...154,876,627 		JBrowse link
G Cdh1 cadherin 1 ISO PID PID:200124 PID:200147 PID:200182 NCBI chr19:51,402,178...51,471,572
Ensembl chr19:51,402,034...51,471,565 		JBrowse link
G Crk CRK proto-oncogene, adaptor protein ISO PID PID:200124 NCBI chr10:61,028,736...61,054,971
Ensembl chr10:61,028,757...61,082,988 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO PID PID:200124 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO PID PID:200124 NCBI chr19:9,562,340...9,602,136
Ensembl chr19:9,562,321...9,602,136 		JBrowse link
G Csnk2b casein kinase 2 beta ISO PID PID:200124 NCBI chr20:3,704,833...3,709,999
Ensembl chr20:3,704,904...3,710,525 		JBrowse link
G Ctnna1 catenin alpha 1 ISO PID PID:200124 PID:200147 PID:200182 NCBI chr18:27,002,330...27,135,009
Ensembl chr18:26,999,820...27,135,007 		JBrowse link
G Ctnnb1 catenin beta 1 ISO PID PID:200124 PID:200147 PID:200182 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Ctnnd1 catenin delta 1 ISO PID PID:200124 PID:200147 PID:200182 NCBI chr 3:90,090,025...90,141,247
Ensembl chr 3:90,090,564...90,141,189 		JBrowse link
G Cttn cortactin ISO PID PID:200124 NCBI chr 1:209,029,048...209,064,577
Ensembl chr 1:209,029,048...209,058,211 		JBrowse link
G Cyfip2 cytoplasmic FMR1 interacting protein 2 ISO PID PID:200124 PID:200182 NCBI chr10:31,122,653...31,242,440
Ensembl chr10:31,122,653...31,242,440 		JBrowse link
G Diaph1 diaphanous-related formin 1 ISO PID PID:200182 NCBI chr18:29,920,889...30,020,280
Ensembl chr18:29,920,889...30,020,280 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 ISO PID PID:200124 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:82,416,853...82,607,797 		JBrowse link
G Efna1 ephrin A1 ISO PID PID:200182 NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:176,979,434...176,988,726 		JBrowse link
G Egf epidermal growth factor ISO PID PID:200182 NCBI chr 2:220,893,660...220,976,331
Ensembl chr 2:220,893,660...220,976,297 		JBrowse link
G Egfr epidermal growth factor receptor ISO PID PID:200147 PID:200182 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:95,378,626...95,551,358 		JBrowse link
G Enah ENAH, actin regulator ISO PID PID:200124 PID:200182 NCBI chr13:96,149,437...96,269,841
Ensembl chr13:96,149,437...96,269,796 		JBrowse link
G Epha2 Eph receptor A2 ISO PID PID:200182 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:158,888,629...158,917,234 		JBrowse link
G Exoc3 exocyst complex component 3 ISO PID PID:200182 NCBI chr 1:30,919,871...30,950,624 JBrowse link
G Exoc4 exocyst complex component 4 ISO PID PID:200182 NCBI chr 4:62,774,896...63,551,541
Ensembl chr 4:62,774,935...63,552,943 		JBrowse link
G Fmn1 formin 1 ISO PID PID:200147 NCBI chr 3:120,555,445...120,939,978
Ensembl chr 3:120,555,431...120,933,124 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200147 NCBI chr20:44,322,635...44,514,498
Ensembl chr20:44,322,361...44,515,479 		JBrowse link
G Git1 GIT ArfGAP 1 ISO PID PID:200182 NCBI chr10:62,840,165...62,854,508
Ensembl chr10:62,840,394...62,854,508 		JBrowse link
G Hgf hepatocyte growth factor ISO PID PID:200182 NCBI chr 4:19,628,902...19,700,467
Ensembl chr 4:19,632,267...19,700,851 		JBrowse link
G Igf1 insulin-like growth factor 1 ISO PID PID:200182 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:24,130,137...24,246,764 		JBrowse link
G Igf1r insulin-like growth factor 1 receptor ISO PID PID:200182 NCBI chr 1:130,959,787...131,248,664
Ensembl chr 1:130,959,997...131,248,664 		JBrowse link
G Iqgap1 IQ motif containing GTPase activating protein 1 ISO PID PID:200124 NCBI chr 1:144,088,788...144,178,989
Ensembl chr 1:144,088,793...144,179,043 		JBrowse link
G Itgae integrin subunit alpha E ISO PID PID:200124 NCBI chr10:58,203,331...58,262,606
Ensembl chr10:58,203,364...58,262,606 		JBrowse link
G Itgb7 integrin subunit beta 7 ISO PID PID:200124 NCBI chr 7:135,225,962...135,243,522
Ensembl chr 7:135,226,555...135,243,597 		JBrowse link
G Jup junction plakoglobin ISO PID PID:200124 PID:200147 NCBI chr10:85,800,812...85,827,881
Ensembl chr10:85,800,814...85,827,429 		JBrowse link
G Kifc3 kinesin family member C3 ISO PID PID:200182 NCBI chr19:9,831,159...9,926,405
Ensembl chr19:9,831,159...9,926,405 		JBrowse link
G Klhl20 kelch-like family member 20 ISO PID PID:200124 NCBI chr13:75,896,802...75,941,724
Ensembl chr13:75,898,410...75,945,061 		JBrowse link
G Lima1 LIM domain and actin binding 1 ISO PID PID:200182 NCBI chr 7:132,780,556...132,880,343
Ensembl chr 7:132,780,556...132,880,386 		JBrowse link
G Lpp LIM domain containing preferred translocation partner in lipoma ISO PID PID:200182 NCBI chr11:89,292,060...89,933,973
Ensembl chr11:89,305,187...89,805,264 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO PID PID:200182 NCBI chr 4:46,756,823...46,864,041
Ensembl chr 4:46,756,506...46,870,821 		JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase ISO PID PID:200182 NCBI chr 7:113,614,011...113,640,201
Ensembl chr 7:113,598,059...113,643,481 		JBrowse link
G Myl2 myosin light chain 2 ISO PID PID:200182 NCBI chr12:40,114,964...40,126,236
Ensembl chr12:40,114,958...40,129,149 		JBrowse link
G Myo6 myosin VI ISO PID PID:200182 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:89,967,377...90,122,215 		JBrowse link
G Nck1 NCK adaptor protein 1 ISO PID PID:200182 NCBI chr 8:109,897,723...109,958,247
Ensembl chr 8:109,897,724...109,958,247 		JBrowse link
G Nckap1 NCK-associated protein 1 ISO PID PID:200124 PID:200182 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:85,824,336...85,898,797 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 ISO PID PID:200182 NCBI chr 1:88,500,086...88,535,474
Ensembl chr 1:88,500,087...88,535,305 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 ISO PID PID:200124 NCBI chr10:79,403,939...79,426,620
Ensembl chr10:79,403,940...79,413,310 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO PID PID:200124 PID:200147 NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:117,143,468...117,177,411 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO PID PID:200124 PID:200147 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:34,612,946...34,626,347 		JBrowse link
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha ISO PID PID:200147 NCBI chr 2:185,317,319...185,361,859
Ensembl chr 2:185,317,319...185,360,476 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ISO PID PID:200124 PID:200182 NCBI chr 7:9,048,135...9,076,751
Ensembl chr 7:9,048,146...9,076,716 		JBrowse link
G Plcg1 phospholipase C, gamma 1 ISO PID PID:200147 NCBI chr 3:169,805,299...169,836,040
Ensembl chr 3:169,804,846...169,836,050 		JBrowse link
G Plekha7 pleckstrin homology domain containing A7 ISO PID PID:200182 NCBI chr 1:179,798,856...179,982,155
Ensembl chr 1:179,799,040...179,982,281 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200124 PID:200147 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO PID PID:200124 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:195,896,971...195,974,808 		JBrowse link
G Rap1b RAP1B, member of RAS oncogene family ISO PID PID:200124 NCBI chr 7:55,308,922...55,342,217
Ensembl chr 7:55,308,922...55,342,217 		JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 ISO PID PID:200124 NCBI chr 3:33,296,211...33,414,119
Ensembl chr 3:33,296,230...33,414,119 		JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200124 PID:200147 PID:200182 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:117,870,270...117,904,302 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO PID PID:200182 NCBI chr18:1,387,360...1,509,218
Ensembl chr18:1,387,360...1,509,147 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200124 PID:200147 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:166,511,985...166,559,462 		JBrowse link
G Stx4 syntaxin 4 ISO PID PID:200182 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:191,881,559...191,896,774 		JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 ISO PID PID:200124 NCBI chr11:42,517,527...42,866,280
Ensembl chr11:42,517,528...42,646,075 		JBrowse link
G Tjp1 tight junction protein 1 ISO PID PID:200124 NCBI chr 1:128,260,330...128,505,018
Ensembl chr 1:128,260,330...128,505,158 		JBrowse link
G Vasp vasodilator-stimulated phosphoprotein ISO PID PID:200147 PID:200182 NCBI chr 1:88,038,026...88,053,783
Ensembl chr 1:88,038,037...88,058,650 		JBrowse link
G Vav2 vav guanine nucleotide exchange factor 2 ISO PID PID:200124 NCBI chr 3:30,982,754...31,152,116
Ensembl chr 3:30,982,754...31,152,116 		JBrowse link
G Vcl vinculin ISO PID PID:200182 NCBI chr15:3,315,069...3,404,891
Ensembl chr15:3,315,069...3,405,163 		JBrowse link
G Wasf2 WASP family member 2 ISO PID PID:200124 NCBI chr 5:150,620,733...150,685,943
Ensembl chr 5:150,620,733...150,685,943 		JBrowse link
G Zyx zyxin ISO PID PID:200147 PID:200182 NCBI chr 4:72,203,991...72,213,181
Ensembl chr 4:72,204,007...72,213,181 		JBrowse link
ephrin - ephrin receptor bidirectional signaling axis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp1 acid phosphatase 1 ISO PID PID:200216 NCBI chr 6:53,233,937...53,249,576
Ensembl chr 6:53,233,948...53,251,959 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 ISO PID PID:200216 NCBI chr 1:86,330,566...86,447,414
Ensembl chr 1:86,330,566...86,447,414 		JBrowse link
G Arhgef15 Rho guanine nucleotide exchange factor 15 ISO PID PID:200142 NCBI chr10:54,149,372...54,162,128
Ensembl chr10:54,149,372...54,162,128 		JBrowse link
G Bcar1 BCAR1 scaffold protein, Cas family member ISO PID PID:200216 NCBI chr19:56,588,500...56,623,190
Ensembl chr19:56,588,500...56,623,190 		JBrowse link
G Blk BLK proto-oncogene, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr15:41,802,701...41,841,004
Ensembl chr15:41,802,994...41,840,982 		JBrowse link
G Cbl Cbl proto-oncogene ISO PID PID:200142 PID:200216 NCBI chr 8:53,384,656...53,468,067
Ensembl chr 8:53,384,656...53,468,067 		JBrowse link
G Cdc42 cell division cycle 42 ISO PID PID:200052 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:154,839,631...154,876,627 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 ISO PID PID:200142 NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:11,647,141...11,652,777 		JBrowse link
G Crk CRK proto-oncogene, adaptor protein ISO PID PID:200142 NCBI chr10:61,028,736...61,054,971
Ensembl chr10:61,028,757...61,082,988 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO PID PID:200142 NCBI chr11:97,033,033...97,067,457
Ensembl chr11:97,024,782...97,067,457 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO PID PID:200204 NCBI chr13:42,630,383...42,634,288
Ensembl chr13:42,630,104...42,634,459 		JBrowse link
G Dnm1 dynamin 1 ISO PID PID:200052 PID:200204 NCBI chr 3:36,002,535...36,055,220
Ensembl chr 3:36,002,064...36,046,289 		JBrowse link
G Efna1 ephrin A1 ISS
ISO 		PID
RGD		 PMID:12615978 PID:200142 PID:200216, RGD:1299268 NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:176,979,434...176,988,726 		JBrowse link
G Efna2 ephrin A2 TAS
ISO 		PID
RGD		 PMID:10792438 PID:200142, RGD:1300471 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:10,167,091...10,177,719 		JBrowse link
G Efna3 ephrin A3 TAS
ISO 		PID
RGD		 PMID:10954848 PID:200142, RGD:634739 NCBI chr 2:177,026,928...177,035,838
Ensembl chr 2:177,026,933...177,044,843 		JBrowse link
G Efna5 ephrin A5 ISO PID PID:200052 PID:200059 PID:200142 NCBI chr 9:109,763,786...110,042,396
Ensembl chr 9:109,767,252...110,042,348 		JBrowse link
G Efnb1 ephrin B1 TAS
ISO 		PID
RGD		 PMID:12139920 PID:200052 PID:200204, RGD:727396 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:68,297,492...68,349,546 		JBrowse link
G Efnb2 ephrin B2 ISO PID PID:200052 PID:200204 NCBI chr16:87,485,215...87,529,224
Ensembl chr16:87,485,198...87,529,208 		JBrowse link
G Efnb3 ephrin B3 TAS
ISO 		PID
RGD		 PMID:12963092 PID:200052, RGD:1300456 NCBI chr10:54,773,282...54,780,727
Ensembl chr10:54,773,282...54,797,651 		JBrowse link
G Epha1 Eph receptor A1 ISO PID PID:200142 NCBI chr 4:72,213,022...72,227,543
Ensembl chr 4:72,213,037...72,227,474 		JBrowse link
G Epha2 Eph receptor A2 ISO PID PID:200142 PID:200216 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:158,888,629...158,917,234 		JBrowse link
G Epha3 Eph receptor A3 ISO PID PID:200142 NCBI chr11:14,585,041...14,920,721
Ensembl chr11:14,586,727...14,920,425 		JBrowse link
G Epha4 Eph receptor A4 ISO PID PID:200142 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:86,263,982...86,406,755 		JBrowse link
G Epha5 EPH receptor A5 ISO PID PID:200059 PID:200142 NCBI chr14:24,007,400...24,374,854
Ensembl chr14:24,008,122...24,374,848 		JBrowse link
G Epha6 Eph receptor A6 ISO PID PID:200142 NCBI chr11:53,226,784...54,178,120
Ensembl chr11:53,226,954...54,166,987 		JBrowse link
G Epha7 Eph receptor A7 ISO PID PID:200142 NCBI chr 5:47,771,776...47,925,189
Ensembl chr 5:47,771,865...47,925,058 		JBrowse link
G Epha8 Eph receptor A8 ISO PID PID:200142 NCBI chr 5:154,449,566...154,476,966
Ensembl chr 5:154,449,566...154,476,966 		JBrowse link
G Ephb1 Eph receptor B1 ISO PID PID:200052 PID:200204 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:111,386,432...111,823,759 		JBrowse link
G Ephb2 Eph receptor B2 ISO PID PID:200052 PID:200204 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Ephb3 Eph receptor B3 ISO PID PID:200052 NCBI chr11:93,345,098...93,363,775
Ensembl chr11:93,345,098...93,363,775 		JBrowse link
G Ephb4 EPH receptor B4 ISO PID PID:200052 PID:200204 NCBI chr12:24,963,174...24,988,473
Ensembl chr12:24,963,174...24,988,388 		JBrowse link
G Fga fibrinogen alpha chain ISO PID PID:200204 NCBI chr 2:170,672,169...170,679,572
Ensembl chr 2:170,672,012...170,679,577 		JBrowse link
G Fgb fibrinogen beta chain ISO PID PID:200204 NCBI chr 2:170,693,966...170,700,875
Ensembl chr 2:170,692,965...170,705,434 		JBrowse link
G Fgg fibrinogen gamma chain ISO PID PID:200204 NCBI chr 2:170,652,929...170,660,372
Ensembl chr 2:170,652,234...170,661,170 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr 5:150,473,767...150,503,524
Ensembl chr 5:150,473,792...150,503,169 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200059 PID:200142 PID:200204 NCBI chr20:44,322,635...44,514,498
Ensembl chr20:44,322,361...44,515,479 		JBrowse link
G Grb2 growth factor receptor bound protein 2 ISO PID PID:200052 PID:200216 NCBI chr10:101,380,354...101,448,138
Ensembl chr10:101,380,356...101,448,138 		JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO PID PID:200052 NCBI chr10:83,936,538...83,949,344
Ensembl chr10:83,939,299...83,949,382 		JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO PID PID:200052 NCBI chr10:41,710,540...42,030,105
Ensembl chr10:41,711,080...42,030,309 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr 3:162,031,833...162,074,933
Ensembl chr 3:162,031,817...162,074,935 		JBrowse link
G Hras HRas proto-oncogene, GTPase ISO PID PID:200052 NCBI chr 1:205,712,625...205,729,406
Ensembl chr 1:205,725,975...205,729,590 		JBrowse link
G Inppl1 inositol polyphosphate phosphatase-like 1 ISO PID PID:200216 NCBI chr 1:165,595,047...165,609,503
Ensembl chr 1:165,595,063...165,609,503 		JBrowse link
G Itga2b integrin subunit alpha 2b ISO PID PID:200204 NCBI chr10:87,908,697...87,926,225
Ensembl chr10:87,908,697...87,925,833 		JBrowse link
G Itgb3 integrin subunit beta 3 ISO PID PID:200204 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:90,009,900...90,067,800 		JBrowse link
G Itsn1 intersectin 1 ISO PID PID:200052 NCBI chr11:44,464,515...44,646,598
Ensembl chr11:44,513,186...44,646,598 		JBrowse link
G Kalrn kalirin, RhoGEF kinase ISO PID PID:200052 NCBI chr11:79,703,345...80,309,210
Ensembl chr11:79,703,366...80,133,329 		JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr 5:147,172,642...147,201,267
Ensembl chr 5:147,172,642...147,201,267 		JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr 5:21,437,127...21,553,097
Ensembl chr 5:21,437,084...21,554,461 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO PID PID:200052 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:73,578,752...73,650,184 		JBrowse link
G Map2k4 mitogen activated protein kinase kinase 4 ISO PID PID:200204 NCBI chr10:50,842,348...50,947,063
Ensembl chr10:50,844,034...50,947,185 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO PID PID:200204 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:51,154,352...51,212,012 		JBrowse link
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 ISO PID PID:200052 NCBI chr 9:49,696,573...49,822,353
Ensembl chr 9:49,696,700...49,822,353 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO PID PID:200052 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:97,462,025...97,527,825 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO PID PID:200052 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200204 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,645,198...8,728,427 		JBrowse link
G Nck1 NCK adaptor protein 1 ISO PID PID:200052 NCBI chr 8:109,897,723...109,958,247
Ensembl chr 8:109,897,724...109,958,247 		JBrowse link
G Nck2 NCK adaptor protein 2 ISO PID PID:200204 NCBI chr 9:53,206,006...53,332,417
Ensembl chr 9:53,231,381...53,332,394 		JBrowse link
G Ngef neuronal guanine nucleotide exchange factor ISO PID PID:200142 NCBI chr 9:95,594,823...95,692,381
Ensembl chr 9:95,594,823...95,692,251 		JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO PID PID:200052 NCBI chr 2:193,271,399...193,282,023
Ensembl chr 2:193,271,430...193,278,543 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO PID PID:200052 PID:200216 NCBI chr 1:161,522,399...161,637,623
Ensembl chr 1:161,491,847...161,637,612 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO PID PID:200052 PID:200204 PID:200216 NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:117,143,468...117,177,411 		JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma ISO PID PID:200142 NCBI chr 6:54,494,247...54,529,563
Ensembl chr 6:54,478,603...54,529,509 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO PID PID:200052 PID:200204 PID:200216 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:34,612,946...34,626,347 		JBrowse link
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 ISO PID PID:200142 NCBI chr10:53,631,469...53,699,550
Ensembl chr10:53,631,476...53,699,539 		JBrowse link
G Pik3r6 phosphoinositide-3-kinase, regulatory subunit 6 ISO PID PID:200142 NCBI chr10:53,702,821...53,754,113
Ensembl chr10:53,704,682...53,754,497 		JBrowse link
G Plcg1 phospholipase C, gamma 1 ISO PID PID:200142 NCBI chr 3:169,805,299...169,836,040
Ensembl chr 3:169,804,846...169,836,050 		JBrowse link
G Ptpn13 protein tyrosine phosphatase, non-receptor type 13 ISO PID PID:200204 NCBI chr14:6,412,841...6,587,238
Ensembl chr14:6,412,841...6,587,171 		JBrowse link
G Pxn paxillin ISO PID PID:200052 NCBI chr12:46,721,546...46,768,706
Ensembl chr12:46,721,546...46,768,697 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200052 PID:200204 PID:200216 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO PID PID:200052 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:195,896,971...195,974,808 		JBrowse link
G Rap1b RAP1B, member of RAS oncogene family ISO PID PID:200052 NCBI chr 7:55,308,922...55,342,217
Ensembl chr 7:55,308,922...55,342,217 		JBrowse link
G Rasa1 RAS p21 protein activator 1 ISO PID PID:200052 NCBI chr 2:17,593,136...17,676,707
Ensembl chr 2:17,593,136...17,676,161 		JBrowse link
G Rgs3 regulator of G-protein signaling 3 ISO PID PID:200204 NCBI chr 5:81,037,588...81,177,446
Ensembl chr 5:81,056,068...81,177,445 		JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200142 PID:200216 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:117,870,270...117,904,302 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO PID PID:200052 PID:200142 NCBI chr18:1,387,360...1,509,218
Ensembl chr18:1,387,360...1,509,147 		JBrowse link
G Rras RAS related ISO PID PID:200052 NCBI chr 1:104,637,061...104,640,841
Ensembl chr 1:104,634,951...104,640,841 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200052 PID:200142 PID:200204 PID:200216 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:166,511,985...166,559,462 		JBrowse link
G Synj1 synaptojanin 1 ISO PID PID:200052 NCBI chr11:43,678,709...43,755,526
Ensembl chr11:43,678,709...43,755,526 		JBrowse link
G Tf transferrin ISO PID PID:200052 NCBI chr 8:112,668,667...112,695,376
Ensembl chr 8:112,647,642...112,695,400 		JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 ISO PID PID:200204 PID:200216 NCBI chr11:42,517,527...42,866,280
Ensembl chr11:42,517,528...42,646,075 		JBrowse link
G Vav2 vav guanine nucleotide exchange factor 2 ISO PID PID:200142 PID:200216 NCBI chr 3:30,982,754...31,152,116
Ensembl chr 3:30,982,754...31,152,116 		JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 ISO PID PID:200142 PID:200216 NCBI chr 2:199,699,861...200,042,344
Ensembl chr 2:199,700,445...200,042,343 		JBrowse link
G Wasl WASP like actin nucleation promoting factor ISO PID PID:200052 NCBI chr 4:54,049,081...54,097,653
Ensembl chr 4:54,049,082...54,097,570 		JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase ISO PID PID:200142 PID:200204 NCBI chr 9:120,646,657...120,753,880
Ensembl chr 9:120,646,838...120,746,441 		JBrowse link
integrin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apbb1ip amyloid beta precursor protein binding family B member 1 interacting protein ISO RGD PMID:18363565 RGD:2300340 NCBI chr17:89,849,474...89,941,099
Ensembl chr17:89,671,716...89,941,089 		JBrowse link
G Fabp3 fatty acid binding protein 3 ISO RGD PMID:23719537 RGD:7364738 NCBI chr 5:147,936,027...147,942,870
Ensembl chr 5:147,936,119...147,942,881 		JBrowse link
G Fblim1 filamin binding LIM protein 1 ISO RGD PMID:23860236 RGD:7349373 NCBI chr 5:159,167,004...159,198,578
Ensembl chr 5:159,167,004...159,196,853 		JBrowse link
G Fermt1 FERM domain containing kindlin 1 ISO RGD PMID:23860236 RGD:7349373 NCBI chr 3:140,624,434...140,666,419
Ensembl chr 3:140,624,434...140,666,419 		JBrowse link
G Fermt2 FERM domain containing kindlin 2 ISO RGD PMID:23860236 RGD:7349373 NCBI chr15:21,162,603...21,257,995
Ensembl chr15:21,162,605...21,258,115 		JBrowse link
G Fermt3 FERM domain containing kindlin 3 ISO RGD PMID:23860236 RGD:7349373 NCBI chr 1:213,618,691...213,636,889
Ensembl chr 1:213,618,208...213,636,273 		JBrowse link
G Flna filamin A ISO RGD PMID:23719537 RGD:7364738 NCBI chr  X:157,159,051...157,185,559
Ensembl chr  X:157,159,051...157,182,343 		JBrowse link
G Flnb filamin B ISO RGD PMID:23719537 RGD:7364738 NCBI chr15:19,392,212...19,525,278
Ensembl chr15:19,392,216...19,525,209 		JBrowse link
G Flnc filamin C ISO RGD PMID:23719537 RGD:7364738 NCBI chr 4:58,999,445...59,027,240
Ensembl chr 4:58,999,547...59,027,240 		JBrowse link
G Ilk integrin-linked kinase ISO
IMP 		RGD PMID:16493410 PMID:8538749 PMID:12629168 RGD:2300344, RGD:40924646, RGD:2302091 NCBI chr 1:169,500,716...169,506,972
Ensembl chr 1:169,498,681...169,506,964 		JBrowse link
G Ilkap ILK associated serine/threonine phosphatase ISO RGD PMID:16493410 RGD:2300344 NCBI chr 9:99,413,981...99,436,262
Ensembl chr 9:99,413,978...99,436,418 		JBrowse link
G Itga1 integrin subunit alpha 1 ISS
ISO 		RGD PMID:2380249 PMID:17543136 RGD:729264, RGD:5135538 NCBI chr 2:48,379,181...48,545,336
Ensembl chr 2:48,386,249...48,545,284 		JBrowse link
G Itga10 integrin subunit alpha 10 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 2:186,871,711...186,891,012
Ensembl chr 2:186,871,711...186,891,012 		JBrowse link
G Itga11 integrin subunit alpha 11 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 8:72,041,432...72,150,137
Ensembl chr 8:72,016,652...72,150,137 		JBrowse link
G Itga2 integrin subunit alpha 2 TAS
ISO 		RGD PMID:12941079 PMID:17543136 RGD:1302878, RGD:5135538 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:48,253,412...48,354,509 		JBrowse link
G Itga2b integrin subunit alpha 2b ISO based on Entrez HomoloGene, BLAST RGD PMID:17543136 RGD:5135538 NCBI chr10:87,908,697...87,926,225
Ensembl chr10:87,908,697...87,925,833 		JBrowse link
G Itga3 integrin subunit alpha 3 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr10:80,486,998...80,522,548
Ensembl chr10:80,486,999...80,518,901 		JBrowse link
G Itga4 integrin subunit alpha 4 TAS
ISO 		RGD PMID:11782963 PMID:17543136 RGD:1302879, RGD:5135538 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:84,560,369...84,641,039 		JBrowse link
G Itga5 integrin subunit alpha 5 IDA
ISO 		RGD PMID:12821041 PMID:17543136 RGD:1300196, RGD:5135538 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itga6 integrin subunit alpha 6 ISS
ISO 		RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 3:77,012,168...77,097,076
Ensembl chr 3:77,017,766...77,097,076 		JBrowse link
G Itga7 integrin subunit alpha 7 IDA
ISO 		RGD PMID:1315319 PMID:17543136 RGD:70774, RGD:5135538 NCBI chr 7:1,944,447...1,973,347
Ensembl chr 7:1,944,460...1,973,339 		JBrowse link
G Itga8 integrin subunit alpha 8 ISO RGD PMID:17543136 PMID:9054500 RGD:5135538, RGD:40903006 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:80,213,143...80,410,633 		JBrowse link
G Itga9 integrin subunit alpha 9 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 8:127,185,244...127,493,296
Ensembl chr 8:127,169,226...127,493,296 		JBrowse link
G Itgad integrin subunit alpha D ISS
ISO 		RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 1:192,190,204...192,218,864
Ensembl chr 1:192,190,204...192,218,864 		JBrowse link
G Itgae integrin subunit alpha E TAS
ISO 		RGD PMID:9394838 PMID:17543136 RGD:633077, RGD:5135538 NCBI chr10:58,203,331...58,262,606
Ensembl chr10:58,203,364...58,262,606 		JBrowse link
G Itgal integrin subunit alpha L ISS
ISO 		RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 1:191,348,424...191,386,228
Ensembl chr 1:191,348,542...191,386,225 		JBrowse link
G Itgam integrin subunit alpha M ISO RGD PMID:34630381 PMID:17543136 RGD:329849126, RGD:5135538 NCBI chr 1:192,089,496...192,139,947
Ensembl chr 1:192,089,542...192,139,943 		JBrowse link
G Itgav integrin subunit alpha V ISO
IDA 		RGD PMID:12297042 PMID:17543136 PMID:12639933 RGD:1358329, RGD:5135538, RGD:1625134 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:89,245,095...89,333,511 		JBrowse link
G Itgax integrin subunit alpha X ISO RGD PMID:17543136 RGD:5135538 NCBI chr 1:192,140,089...192,171,151
Ensembl chr 1:192,149,905...192,171,151 		JBrowse link
G Itgb1 integrin subunit beta 1 ISS
ISO
IDA 		RGD PMID:9633916 PMID:17543136 PMID:12639933 RGD:1302874, RGD:5135538, RGD:1625134 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 ISO RGD PMID:23860236 PMID:23719537 RGD:7349373, RGD:7364738 NCBI chr 6:46,549,994...46,564,735
Ensembl chr 6:46,549,999...46,564,398 		JBrowse link
G Itgb2 integrin subunit beta 2 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,058,492...11,097,182 		JBrowse link
G Itgb3 integrin subunit beta 3 ISO
IDA 		RGD PMID:7528107 PMID:17543136 PMID:12639933 RGD:597805935, RGD:5135538, RGD:1625134 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:90,009,900...90,067,800 		JBrowse link
G Itgb4 integrin subunit beta 4 TAS
ISO 		RGD PMID:8026337 PMID:17543136 RGD:729025, RGD:5135538 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,705,587...101,741,932 		JBrowse link
G Itgb5 integrin subunit beta 5 ISO RGD PMID:17543136 PMID:8799848 RGD:5135538, RGD:41410438 NCBI chr11:80,333,588...80,449,373
Ensembl chr11:80,333,590...80,449,373 		JBrowse link
G Itgb6 integrin subunit beta 6 ISS
ISO 		RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 3:65,454,964...65,579,179
Ensembl chr 3:65,456,713...65,530,333 		JBrowse link
G Itgb7 integrin subunit beta 7 TAS
ISO 		RGD PMID:9233649 PMID:17543136 RGD:633040, RGD:5135538 NCBI chr 7:135,225,962...135,243,522
Ensembl chr 7:135,226,555...135,243,597 		JBrowse link
G Itgb8 integrin subunit beta 8 ISO RGD PMID:12297042 PMID:17543136 RGD:1358329, RGD:5135538 NCBI chr 6:146,267,982...146,351,245
Ensembl chr 6:146,165,484...146,351,245 		JBrowse link
G Krit1 KRIT1, ankyrin repeat containing ISO RGD PMID:23860236 PMID:23719537 RGD:7349373, RGD:7364738 NCBI chr 4:31,253,918...31,288,066
Ensembl chr 4:31,253,918...31,288,073 		JBrowse link
G Lims1 LIM zinc finger domain containing 1 ISO RGD PMID:16493410 RGD:2300344 NCBI chr20:26,851,364...26,961,607
Ensembl chr20:26,852,996...26,961,606 		JBrowse link
G Lims2 LIM zinc finger domain containing 2 ISO RGD PMID:16493410 RGD:2300344 NCBI chr18:23,828,164...23,866,363
Ensembl chr18:23,837,686...23,867,086 		JBrowse link
G Nck2 NCK adaptor protein 2 ISO RGD PMID:16493410 RGD:2300344 NCBI chr 9:53,206,006...53,332,417
Ensembl chr 9:53,231,381...53,332,394 		JBrowse link
G Parva parvin, alpha ISO RGD PMID:16493410 RGD:2300344 NCBI chr 1:175,981,725...176,139,523
Ensembl chr 1:175,981,432...176,139,526 		JBrowse link
G Parvb parvin, beta ISO RGD PMID:16493410 RGD:2300344 NCBI chr 7:117,240,238...117,325,744
Ensembl chr 7:117,240,029...117,325,748 		JBrowse link
G Parvg parvin, gamma ISO RGD PMID:16493410 RGD:2300344 NCBI chr 7:117,336,160...117,366,341
Ensembl chr 7:117,336,187...117,362,155 		JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO RGD PMID:15108811 RGD:2300402 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:107,015,733...107,172,091 		JBrowse link
G Pxn paxillin ISO RGD PMID:16493410 RGD:2300344 NCBI chr12:46,721,546...46,768,706
Ensembl chr12:46,721,546...46,768,697 		JBrowse link
G Sharpin SHANK-associated RH domain interactor ISO RGD PMID:23860236 PMID:23719537 RGD:7349373, RGD:7364738 NCBI chr 7:109,951,336...109,955,552
Ensembl chr 7:109,950,345...109,955,552 		JBrowse link
G Tln1 talin 1 ISO RGD PMID:18363565 PMID:23860236 RGD:2300340, RGD:7349373 NCBI chr 5:62,583,730...62,613,687
Ensembl chr 5:62,583,731...62,613,687 		JBrowse link
G Tln2 talin 2 ISO RGD PMID:23860236 RGD:7349373 NCBI chr 8:76,712,112...77,133,361
Ensembl chr 8:76,712,112...77,133,361 		JBrowse link
N-cadherin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO PID PID:200209 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,667,958...15,720,092 		JBrowse link
G Calm1 calmodulin 1 ISO PID PID:200209 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:125,217,246...125,225,381 		JBrowse link
G Calm2 calmodulin 2 ISO PID PID:200209 NCBI chr 6:12,845,170...12,857,830
Ensembl chr15:64,519,554...64,520,657
Ensembl chr 6:64,519,554...64,520,657 		JBrowse link
G Calm3 calmodulin 3 ISO PID PID:200209 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:86,717,321...86,725,960 		JBrowse link
G Camk2g calcium/calmodulin-dependent protein kinase II gamma ISO PID PID:200209 NCBI chr15:3,553,238...3,612,310
Ensembl chr15:3,553,294...3,612,310 		JBrowse link
G Cdc42 cell division cycle 42 ISO PID PID:200209 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:154,839,631...154,876,627 		JBrowse link
G Cdh2 cadherin 2 ISO PID PID:200209 NCBI chr18:8,051,097...8,265,288
Ensembl chr18:8,051,097...8,265,288 		JBrowse link
G Cnr1 cannabinoid receptor 1 ISO PID PID:200209 NCBI chr 5:53,204,867...53,230,396
Ensembl chr 5:53,204,260...53,239,252 		JBrowse link
G Ctnna1 catenin alpha 1 ISO PID PID:200209 NCBI chr18:27,002,330...27,135,009
Ensembl chr18:26,999,820...27,135,007 		JBrowse link
G Ctnnb1 catenin beta 1 ISO PID PID:200209 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Ctnnd1 catenin delta 1 ISO PID PID:200209 NCBI chr 3:90,090,025...90,141,247
Ensembl chr 3:90,090,564...90,141,189 		JBrowse link
G Cttn cortactin ISO PID PID:200209 NCBI chr 1:209,029,048...209,064,577
Ensembl chr 1:209,029,048...209,058,211 		JBrowse link
G Dagla diacylglycerol lipase, alpha ISO PID PID:200209 NCBI chr 1:216,315,515...216,372,219
Ensembl chr 1:216,315,516...216,372,111 		JBrowse link
G Daglb diacylglycerol lipase, beta ISO PID PID:200209 NCBI chr12:16,173,345...16,215,777
Ensembl chr12:16,173,345...16,215,758 		JBrowse link
G Dctn1 dynactin subunit 1 ISO PID PID:200209 NCBI chr 4:117,228,722...117,261,528
Ensembl chr 4:117,219,349...117,261,528 		JBrowse link
G Fer FER tyrosine kinase ISO PID PID:200209 NCBI chr 9:110,967,317...111,274,315
Ensembl chr 9:110,967,390...111,274,315 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO PID PID:200209 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
G Gap43 growth associated protein 43 ISO PID PID:200209 NCBI chr11:71,882,131...71,975,799
Ensembl chr11:71,882,131...71,975,797 		JBrowse link
G Gja1 gap junction protein, alpha 1 ISO PID PID:200209 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:36,302,352...36,319,689 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 ISO PID PID:200209 NCBI chr 2:168,247,490...168,367,616
Ensembl chr 2:168,247,496...168,367,616 		JBrowse link
G Gsn gelsolin ISO PID PID:200209 NCBI chr 3:38,982,605...39,035,849
Ensembl chr 3:38,982,671...39,035,850 		JBrowse link
G Jup junction plakoglobin ISO PID PID:200209 NCBI chr10:85,800,812...85,827,881
Ensembl chr10:85,800,814...85,827,429 		JBrowse link
G Kif5b kinesin family member 5B ISO PID PID:200209 NCBI chr17:56,185,386...56,222,990
Ensembl chr17:56,185,380...56,223,008 		JBrowse link
G Lrp5 LDL receptor related protein 5 ISO PID PID:200209 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:210,243,502...210,346,822 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200209 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,645,198...8,728,427 		JBrowse link
G Mapre1 microtubule-associated protein, RP/EB family, member 1 ISO PID PID:200209 NCBI chr 3:162,679,020...162,707,167
Ensembl chr 3:162,673,195...162,711,210 		JBrowse link
G Myl2 myosin light chain 2 ISO PID PID:200209 NCBI chr12:40,114,964...40,126,236
Ensembl chr12:40,114,958...40,129,149 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO PID PID:200209 NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:117,143,468...117,177,411 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO PID PID:200209 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:34,612,946...34,626,347 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ISO PID PID:200209 NCBI chr 7:9,048,135...9,076,751
Ensembl chr 7:9,048,146...9,076,716 		JBrowse link
G Plcg1 phospholipase C, gamma 1 ISO PID PID:200209 NCBI chr 3:169,805,299...169,836,040
Ensembl chr 3:169,804,846...169,836,050 		JBrowse link
G Ptpn1 protein tyrosine phosphatase, non-receptor type 1 ISO PID PID:200209 NCBI chr 3:177,056,588...177,106,424
Ensembl chr 3:177,057,659...177,106,416 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO PID PID:200209 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:41,043,785...41,085,577 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200209 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200209 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:117,870,270...117,904,302 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO PID PID:200209 NCBI chr18:1,387,360...1,509,218
Ensembl chr18:1,387,360...1,509,147 		JBrowse link
Notch signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 ISS
ISO 		PID
RGD		 PMID:12354787 PMID:17761886 PID:200015, RGD:1300252, RGD:2302204 NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:80,226,674...80,361,600 		JBrowse link
G Adam12 ADAM metallopeptidase domain 12 ISO PID PID:200015 NCBI chr 1:198,116,968...198,443,680
Ensembl chr 1:198,116,975...198,447,552 		JBrowse link
G Adam17 ADAM metallopeptidase domain 17 ISO
IEA 		KEGG
RGD		 PMID:17761886 rno:04330, RGD:2302204 NCBI chr 6:46,601,583...46,663,690
Ensembl chr 6:46,601,583...46,649,344 		JBrowse link
G Aph1a aph-1 homolog A, gamma secretase subunit ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 2:186,123,023...186,130,886
Ensembl chr 2:186,127,323...186,132,045 		JBrowse link
G Aph1b aph-1 homolog B, gamma secretase subunit ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 8:76,310,380...76,334,146
Ensembl chr 8:76,310,380...76,331,428 		JBrowse link
G Cbl Cbl proto-oncogene ISO PID PID:200015 NCBI chr 8:53,384,656...53,468,067
Ensembl chr 8:53,384,656...53,468,067 		JBrowse link
G Ccnd1 cyclin D1 ISO PID PID:200015 NCBI chr 1:209,518,288...209,527,986
Ensembl chr 1:209,518,288...209,527,810 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO PID PID:200015 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,153,958...7,164,969 		JBrowse link
G Cir1 corepressor interacting with RBPJ, CIR1 IEA KEGG rno:04330 NCBI chr 3:78,566,438...78,596,309
Ensembl chr 3:78,566,438...78,596,309 		JBrowse link
G Cntn1 contactin 1 ISO PID PID:200015 NCBI chr 7:125,142,638...125,440,397
Ensembl chr 7:125,142,696...125,440,391 		JBrowse link
G Cntn6 contactin 6 ISO PID PID:200015 NCBI chr 4:138,911,090...139,307,339
Ensembl chr 4:138,911,380...139,311,816 		JBrowse link
G Crebbp CREB binding protein IEA KEGG rno:04330 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,822,620...11,968,266 		JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO
IEA 		PID
KEGG		 PID:200015 rno:04330 NCBI chr14:81,679,956...81,707,331
Ensembl chr14:81,679,765...81,707,554 		JBrowse link
G Ctbp2 C-terminal binding protein 2 IEA KEGG rno:04330 NCBI chr 1:197,208,536...197,348,802
Ensembl chr 1:197,212,133...197,254,261 		JBrowse link
G Cul1 cullin 1 ISO PID PID:200015 NCBI chr 4:77,551,781...77,634,210
Ensembl chr 4:77,551,787...77,621,760 		JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO PID PID:200015 NCBI chr 6:134,192,491...134,199,779
Ensembl chr 6:134,192,518...134,200,529 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 TAS
IEA
ISO 		KEGG
PID
RGD		 PMID:14743446 PMID:17761886 PID:200015 rno:04330, RGD:1304491, RGD:2302204 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:64,985,161...64,993,276 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 TAS
IEA
ISO 		KEGG
PID
RGD		 PMID:14743446 PMID:17761886 PID:200015 rno:04330, RGD:1304491, RGD:2302204 NCBI chr 1:92,689,577...92,698,125
Ensembl chr 1:92,689,577...92,697,406 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:126,770,794...126,780,763 		JBrowse link
G Dner delta/notch-like EGF repeat containing ISO PID PID:200015 NCBI chr 9:93,035,108...93,350,568
Ensembl chr 9:93,035,108...93,350,568 		JBrowse link
G Dnm1 dynamin 1 ISO PID PID:200015 NCBI chr 3:36,002,535...36,055,220
Ensembl chr 3:36,002,064...36,046,289 		JBrowse link
G Dtx1 deltex E3 ubiquitin ligase 1 ISO PID PID:200015 NCBI chr12:41,510,252...41,541,433
Ensembl chr12:41,510,264...41,541,430 		JBrowse link
G Dtx2 deltex E3 ubiquitin ligase 2 IEA KEGG rno:04330 NCBI chr12:26,279,899...26,319,541
Ensembl chr12:26,279,899...26,319,507 		JBrowse link
G Dtx3 deltex E3 ubiquitin ligase 3 IEA KEGG rno:04330 NCBI chr 7:64,898,693...64,904,636
Ensembl chr 7:64,898,866...64,903,752 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L IEA KEGG rno:04330 NCBI chr11:78,320,225...78,329,837
Ensembl chr11:78,317,650...78,329,837 		JBrowse link
G Dtx4 deltex E3 ubiquitin ligase 4 IEA KEGG rno:04330 NCBI chr 1:218,882,391...218,969,837
Ensembl chr 1:218,832,284...218,917,130 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 IEA KEGG rno:04330 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:171,739,133...171,750,966 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 IEA KEGG rno:04330 NCBI chr11:93,869,834...93,887,013
Ensembl chr11:93,869,834...93,886,903 		JBrowse link
G Eno1 enolase 1 ISO PID PID:200015 NCBI chr 5:166,002,867...166,014,252
Ensembl chr 3:77,946,261...77,986,003
Ensembl chr 5:77,946,261...77,986,003 		JBrowse link
G Ep300 E1A binding protein p300 ISO
IEA 		PID
KEGG		 PID:200015 rno:04330 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 ISO PID PID:200015 NCBI chr 5:129,274,487...129,374,856
Ensembl chr 5:129,274,502...129,374,856 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO PID PID:200015 NCBI chr 2:172,447,738...172,609,591
Ensembl chr 2:172,447,738...172,609,591 		JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) ISO PID PID:200015 NCBI chr 1:143,757,389...143,770,430
Ensembl chr 1:143,757,391...143,773,497 		JBrowse link
G Gata3 GATA binding protein 3 ISO PID PID:200015 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:73,553,548...73,575,670 		JBrowse link
G Hdac1 histone deacetylase 1 ISO
IEA 		PID
KEGG		 PID:200015 rno:04330 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387 		JBrowse link
G Hdac1l histone deacetylase 1-like IEA KEGG rno:04330 NCBI chr 9:87,901,045...87,903,045
Ensembl chr 9:87,896,472...87,903,613 		JBrowse link
G Hdac2 histone deacetylase 2 IEA KEGG rno:04330 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO
IEA 		KEGG
RGD		 PMID:17586813 rno:04330, RGD:5135539 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:84,210,633...84,213,061 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 ISO
IEA 		KEGG
RGD		 PMID:17586813 rno:04330, RGD:5135539 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:170,803,940...170,806,021 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 ISO RGD PMID:17586813 RGD:5135539 NCBI chr10:54,322,971...54,327,776
Ensembl chr10:54,322,971...54,327,776 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 IDA
ISO 		RGD PMID:11741889 PMID:17586813 RGD:70528, RGD:5135539 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:95,002,943...95,007,624 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO
IDA 		RGD PMID:17586813 PMID:11741889 RGD:5135539, RGD:70528 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:28,641,057...28,651,187 		JBrowse link
G Heyl hes-related family bHLH transcription factor with YRPW motif-like ISO RGD PMID:17586813 RGD:5135539 NCBI chr 5:140,793,271...140,810,262
Ensembl chr 5:140,793,271...140,810,262 		JBrowse link
G Il4 interleukin 4 ISO PID PID:200015 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:38,272,003...38,277,549 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase ISO PID PID:200015 NCBI chr 3:164,102,490...164,193,932
Ensembl chr 3:164,105,812...164,193,932 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 IDA
IEA
ISO
IMP 		KEGG
PID
RGD		 PMID:7697721 PMID:15057910 PMID:17761886 PID:200015 rno:04330, RGD:69863, RGD:1334443, RGD:2302204 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:144,859,453...144,894,872 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:137,804,133...137,826,738 		JBrowse link
G Kat2a lysine acetyltransferase 2A IEA KEGG rno:04330 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:86,132,535...86,140,485 		JBrowse link
G Kat2b lysine acetyltransferase 2B IEA KEGG rno:04330 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,799,145...6,903,616 		JBrowse link
G Kdm1a lysine demethylase 1A ISO PID PID:200015 NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:154,065,543...154,121,775 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IDA
IEA
ISO 		KEGG
RGD		 PMID:12167404 PMID:17761886 rno:04330, RGD:727405, RGD:2302204 NCBI chr12:19,144,474...19,152,951
Ensembl chr12:19,124,662...19,152,918 		JBrowse link
G Lnx1 ligand of numb-protein X 1 ISO PID PID:200015 NCBI chr14:33,868,517...33,971,217
Ensembl chr14:33,868,571...33,971,217 		JBrowse link
G Maml1 mastermind-like transcriptional coactivator 1 ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr10:35,089,715...35,124,100
Ensembl chr10:35,089,715...35,124,100 		JBrowse link
G Maml2 mastermind-like transcriptional coactivator 2 ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 8:18,552,480...18,869,923
Ensembl chr 8:18,552,281...18,869,900 		JBrowse link
G Maml3 mastermind-like transcriptional coactivator 3 ISO RGD PMID:17761886 RGD:2302204 NCBI chr 2:137,871,267...138,288,615
Ensembl chr 2:137,871,267...138,287,960 		JBrowse link
G Mark2 microtubule affinity regulating kinase 2 ISO PID PID:200015 NCBI chr 1:213,890,213...213,955,417
Ensembl chr 1:213,890,213...213,955,149 		JBrowse link
G Mfap2 microfibril associated protein 2 ISO PID PID:200015 NCBI chr 5:158,595,121...158,603,283
Ensembl chr 5:158,597,512...158,610,656 		JBrowse link
G Mfap5 microfibril associated protein 5 ISO PID PID:200015 NCBI chr 4:157,399,919...157,422,448
Ensembl chr 4:157,395,597...157,422,448 		JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISS
IEA
ISO 		KEGG
RGD		 PMID:9187150 PMID:17761886 rno:04330, RGD:1302739, RGD:2302204 NCBI chr 7:112,191,288...112,209,129
Ensembl chr 7:112,161,071...112,209,129 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 ISO PID
RGD		 PMID:12530964 PID:200015, RGD:1334454 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:2,075,309...2,193,475 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO PID PID:200015 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:95,483,105...95,488,028 		JBrowse link
G Mycbp Myc binding protein ISO PID PID:200015 NCBI chr 5:141,420,727...141,427,938
Ensembl chr 5:141,420,707...141,430,681 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO PID PID:200015 NCBI chr10:47,498,852...47,641,612
Ensembl chr10:47,498,852...47,640,350 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO
IEA 		PID
KEGG		 PID:200015 rno:04330 NCBI chr12:37,127,736...37,289,612
Ensembl chr12:37,127,686...37,289,612 		JBrowse link
G Ncstn nicastrin TAS
IEA
ISO 		KEGG
PID
RGD		 PMID:12736250 PMID:17761886 PID:200015 rno:04330, RGD:724403, RGD:2302204 NCBI chr13:87,062,827...87,078,839
Ensembl chr13:87,062,831...87,078,839 		JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 ISO RGD PMID:14986688 RGD:1334462 NCBI chr 1:256,008,012...256,094,219
Ensembl chr 1:256,008,160...256,094,224 		JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 ISO RGD PMID:14986688 RGD:1334462 NCBI chr 3:173,985,996...173,988,717
Ensembl chr 3:173,986,857...173,989,043 		JBrowse link
G Notch1 notch receptor 1 IDA
IEA
ISO
IMP 		KEGG
PID
RGD		 PMID:11900468 PMID:15247148 PMID:15057910 PMID:17761886 PMID:12853432 PID:200015 rno:04330, RGD:724389, RGD:2306423, RGD:1334443, RGD:2302204, RGD:1358543 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:29,676,171...29,721,613 		JBrowse link
G Notch2 notch receptor 2 ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:188,299,336...188,432,823 		JBrowse link
G Notch3 notch receptor 3 ISO
IEA
IDA 		KEGG
PID
RGD		 PMID:11971902 PMID:15247148 PMID:17761886 PID:200015 rno:04330, RGD:625426, RGD:2306423, RGD:2302204 NCBI chr 7:11,783,550...11,834,585
Ensembl chr 7:11,784,272...11,834,778 		JBrowse link
G Notch4 notch receptor 4 IDA
IEA
ISO 		KEGG
PID
RGD		 PMID:10964583 PMID:17761886 PID:200015 rno:04330, RGD:1304484, RGD:2302204 NCBI chr20:4,164,969...4,189,072
Ensembl chr20:4,161,730...4,189,072 		JBrowse link
G Numb NUMB, endocytic adaptor protein TAS
IEA
ISO 		KEGG
PID
RGD		 PMID:12500307 PID:200015 rno:04330, RGD:724390 NCBI chr 6:109,162,499...109,284,527
Ensembl chr 6:109,162,499...109,284,463 		JBrowse link
G Numbl NUMB-like, endocytic adaptor protein ISO
IEA 		KEGG
RGD		 PMID:15492044 rno:04330, RGD:1334451 NCBI chr 1:91,677,437...91,701,415
Ensembl chr 1:91,677,242...91,701,424 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISS
ISO 		RGD PMID:14570055 PMID:17761886 RGD:1334453, RGD:2302204 NCBI chr 3:162,168,855...162,195,798
Ensembl chr 3:162,168,606...162,195,018 		JBrowse link
G Psen1 presenilin 1 TAS
IEA
ISO 		KEGG
PID
RGD		 PMID:12736250 PMID:17761886 PID:200015 rno:04330, RGD:724403, RGD:2302204 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Psen2 presenilin 2 ISO
IEA 		KEGG
RGD		 PMID:17761886 rno:04330, RGD:2302204 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:94,499,928...94,525,116 		JBrowse link
G Psenen presenilin enhancer gamma secretase subunit ISO
IEA 		KEGG
PID
RGD		 PMID:17761886 PID:200015 rno:04330, RGD:2302204 NCBI chr 1:94,942,348...94,943,545
Ensembl chr 1:94,942,225...94,943,752 		JBrowse link
G Ptcra pre T-cell antigen receptor alpha IEA KEGG rno:04330 NCBI chr 9:21,716,522...21,726,751
Ensembl chr 9:21,716,522...21,726,751 		JBrowse link
G Rab11a RAB11a, member RAS oncogene family ISO PID PID:200015 NCBI chr 8:74,118,922...74,141,760
Ensembl chr 8:74,118,922...74,141,837 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO PID PID:200015 NCBI chr18:3,198,188...3,263,643
Ensembl chr18:3,197,310...3,263,985 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IDA
IEA
ISO 		KEGG
PID
RGD		 PMID:15247148 PID:200015 rno:04330, RGD:2306423 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:61,551,366...61,736,307 		JBrowse link
G Rbpjl recombination signal binding protein for immunoglobulin kappa J region-like IEA KEGG rno:04330 NCBI chr 3:173,553,389...173,565,869
Ensembl chr 3:173,553,498...173,565,869 		JBrowse link
G Rbpjl2 recombination signal binding protein for immunoglobulin kappa J region-like 2 IEA KEGG rno:04330 NCBI chr 5:10,248,069...10,249,467 JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IMP
IEA
ISO 		KEGG
RGD		 PMID:11165380 PMID:17761886 rno:04330, RGD:633801, RGD:2302204 NCBI chr10:106,545,543...106,548,644
Ensembl chr10:106,545,543...106,548,644 		JBrowse link
G Skp1 S-phase kinase-associated protein 1 ISO PID PID:200015 NCBI chr10:36,898,670...36,917,828
Ensembl chr10:36,903,078...36,918,308 		JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO PID PID:200015 NCBI chr 2:59,888,406...59,916,471
Ensembl chr 2:59,888,413...59,916,438 		JBrowse link
G Snw1 SNW domain containing 1 IEA KEGG rno:04330 NCBI chr 6:112,826,374...112,850,459
Ensembl chr 6:112,826,381...112,858,180 		JBrowse link
G Spen spen family transcriptional repressor ISO PID PID:200015 NCBI chr 5:159,058,258...159,131,789
Ensembl chr 5:159,058,258...159,165,934 		JBrowse link
G Sspo SCO-spondin ISO PID PID:200015 NCBI chr 4:78,725,829...78,781,330
Ensembl chr 4:78,727,275...78,781,315 		JBrowse link
G Yy1 YY1 transcription factor ISO PID PID:200015 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:133,471,562...133,497,257 		JBrowse link
syndecan signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin, alpha 1 ISO PID PID:200134 NCBI chr 6:104,731,485...104,826,312
Ensembl chr 6:104,731,485...104,826,172 		JBrowse link
G Adam12 ADAM metallopeptidase domain 12 ISO PID PID:200134 NCBI chr 1:198,116,968...198,443,680
Ensembl chr 1:198,116,975...198,447,552 		JBrowse link
G Agrp agouti related neuropeptide ISO PID PID:200198 NCBI chr19:50,357,899...50,396,758
Ensembl chr19:50,357,905...50,358,698 		JBrowse link
G Aph1a aph-1 homolog A, gamma secretase subunit ISO PID PID:200198 NCBI chr 2:186,123,023...186,130,886
Ensembl chr 2:186,127,323...186,132,045 		JBrowse link
G Aph1b aph-1 homolog B, gamma secretase subunit ISO PID PID:200198 NCBI chr 8:76,310,380...76,334,146
Ensembl chr 8:76,310,380...76,331,428 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO PID PID:200192 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:105,076,473...105,086,429 		JBrowse link
G Bsg basigin ISO PID PID:200156 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:10,643,789...10,651,005 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase ISO PID PID:200156 PID:200192 PID:200198 NCBI chr  X:11,572,328...11,915,831
Ensembl chr  X:11,572,636...11,911,948 		JBrowse link
G Casp3 caspase 3 ISO PID PID:200192 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:52,395,540...52,413,732 		JBrowse link
G Cav2 caveolin 2 ISO PID PID:200192 NCBI chr 4:46,582,681...46,590,058
Ensembl chr 4:46,582,096...46,591,425 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO PID PID:200134 PID:200156 NCBI chr10:68,820,330...68,824,906
Ensembl chr10:68,738,651...68,824,884 		JBrowse link
G Cdk15 cyclin-dependent kinase 15 ISO PID PID:200134 NCBI chr 9:68,205,759...68,299,218
Ensembl chr 9:68,205,678...68,293,579 		JBrowse link
G Col10a1 collagen type X alpha 1 chain ISO PID PID:200156 NCBI chr20:39,737,536...39,744,518
Ensembl chr20:39,716,822...39,751,440 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO PID PID:200156 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain ISO PID PID:200156 NCBI chr20:4,788,829...4,818,492
Ensembl chr20:4,788,829...4,817,648 		JBrowse link
G Col12a1 collagen type XII alpha 1 chain ISO PID PID:200156 NCBI chr 8:89,427,834...89,545,886
Ensembl chr 8:89,427,834...89,545,711 		JBrowse link
G Col13a1 collagen type XIII alpha 1 chain ISO PID PID:200156 NCBI chr20:30,326,744...30,466,800
Ensembl chr20:30,326,744...30,466,800 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain ISO PID PID:200156 NCBI chr 7:88,611,827...88,826,939
Ensembl chr 7:88,611,828...88,826,938 		JBrowse link
G Col15a1 collagen type XV alpha 1 chain ISO PID PID:200156 NCBI chr 5:66,297,546...66,403,172
Ensembl chr 5:66,297,461...66,403,170 		JBrowse link
G Col16a1 collagen type XVI alpha 1 chain ISO PID PID:200156 NCBI chr 5:147,672,559...147,727,007
Ensembl chr 5:147,672,601...147,727,011 		JBrowse link
G Col17a1 collagen type XVII alpha 1 chain ISO PID PID:200156 NCBI chr 1:256,472,648...256,518,857
Ensembl chr 1:256,472,648...256,518,851 		JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO PID PID:200156 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO PID PID:200156 NCBI chr 4:33,518,557...33,553,484
Ensembl chr 4:33,518,420...33,553,995 		JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO PID PID:200156 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Col3a1 collagen type III alpha 1 chain ISO PID PID:200156 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:54,866,632...54,903,232 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO PID PID:200156 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:84,885,597...84,996,482 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain ISO PID PID:200156 NCBI chr 9:91,323,990...91,453,088
Ensembl chr 9:91,323,990...91,453,077 		JBrowse link
G Col4a4 collagen type IV alpha 4 chain ISO PID PID:200156 NCBI chr 9:91,281,324...91,323,577
Ensembl chr 9:91,203,670...91,323,577 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain ISO PID PID:200156 NCBI chr  X:109,907,251...110,111,214
Ensembl chr  X:109,907,346...110,111,214 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain ISO PID PID:200156 NCBI chr  X:109,554,945...109,905,987
Ensembl chr  X:109,552,651...109,905,944 		JBrowse link
G Col5a1 collagen type V alpha 1 chain ISO PID PID:200156 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:31,606,486...31,753,020 		JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO PID PID:200156 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:54,940,764...55,090,150 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain ISO PID PID:200156 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,457...11,924,107 		JBrowse link
G Col6a2 collagen type VI alpha 2 chain ISO PID PID:200156 NCBI chr20:12,021,182...12,048,932
Ensembl chr20:12,021,265...12,057,042 		JBrowse link
G Col6a3 collagen type VI alpha 3 chain ISO PID PID:200156 NCBI chr 9:98,809,171...98,887,060
Ensembl chr 9:98,809,171...98,886,990 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO PID PID:200156 NCBI chr 8:118,483,364...118,515,736
Ensembl chr 8:118,483,364...118,517,439 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO PID PID:200156 NCBI chr11:56,245,998...56,378,586
Ensembl chr11:56,369,868...56,376,229 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain ISO PID PID:200156 NCBI chr 5:143,870,754...143,897,372
Ensembl chr 5:143,870,742...143,897,884 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO PID PID:200156 NCBI chr 9:34,081,364...34,164,552
Ensembl chr 9:34,003,905...34,164,543 		JBrowse link
G Col9a2 collagen type IX alpha 2 chain ISO PID PID:200156 NCBI chr 5:139,892,798...139,910,131
Ensembl chr 5:139,892,798...139,909,855 		JBrowse link
G Col9a3 collagen type IX alpha 3 chain ISO PID PID:200156 NCBI chr 3:188,089,337...188,112,034
Ensembl chr 3:188,089,403...188,112,270 		JBrowse link
G Csf2 colony stimulating factor 2 ISO PID PID:200192 NCBI chr10:38,887,692...38,889,673
Ensembl chr10:38,887,692...38,890,031 		JBrowse link
G Cttn cortactin ISO PID PID:200198 NCBI chr 1:209,029,048...209,064,577
Ensembl chr 1:209,029,048...209,058,211 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO PID PID:200134 NCBI chr 4:152,060,781...152,073,628
Ensembl chr 4:152,060,780...152,073,627 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO PID PID:200134 NCBI chr13:42,630,383...42,634,288
Ensembl chr13:42,630,104...42,634,459 		JBrowse link
G Dnm2 dynamin 2 ISO PID PID:200134 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:28,254,529...28,336,295 		JBrowse link
G Egfr epidermal growth factor receptor ISO PID PID:200198 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:95,378,626...95,551,358 		JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 ISO PID PID:200192 NCBI chr 5:149,394,080...149,548,178
Ensembl chr 5:149,394,096...149,543,540 		JBrowse link
G Ephb2 Eph receptor B2 ISO PID PID:200192 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Ezr ezrin ISO PID PID:200192 NCBI chr 1:49,373,033...49,416,573
Ensembl chr 1:49,373,035...49,416,573 		JBrowse link
G F2 coagulation factor II, thrombin ISO PID PID:200134 NCBI chr 3:98,051,958...98,065,246
Ensembl chr 3:98,051,960...98,065,246 		JBrowse link
G Fgf2 fibroblast growth factor 2 ISO PID PID:200134 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:122,164,454...122,224,493 		JBrowse link
G Fgf6 fibroblast growth factor 6 ISO PID PID:200134 NCBI chr 4:161,541,089...161,549,624
Ensembl chr 4:161,541,089...161,553,521 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO PID PID:200134 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:73,194,631...73,249,855 		JBrowse link
G Fn1 fibronectin 1 ISO PID PID:200134 PID:200192 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:80,645,507...80,714,137 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200198 NCBI chr20:44,322,635...44,514,498
Ensembl chr20:44,322,361...44,515,479 		JBrowse link
G Fzd7 frizzled class receptor 7 ISO PID PID:200134 NCBI chr 9:68,425,538...68,428,357
Ensembl chr 9:68,411,259...68,432,585 		JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 ISO PID PID:200134 NCBI chr19:41,380,125...41,392,078
Ensembl chr19:41,380,125...41,391,725 		JBrowse link
G Hgf hepatocyte growth factor ISO PID PID:200156 NCBI chr 4:19,628,902...19,700,467
Ensembl chr 4:19,632,267...19,700,851 		JBrowse link
G Hpse heparanase ISO PID PID:200156 NCBI chr14:9,200,971...9,241,377
Ensembl chr14:9,188,275...9,241,754 		JBrowse link
G Hras HRas proto-oncogene, GTPase ISO PID PID:200192 NCBI chr 1:205,712,625...205,729,406
Ensembl chr 1:205,725,975...205,729,590 		JBrowse link
G Itga2 integrin subunit alpha 2 ISO PID PID:200192 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:48,253,412...48,354,509 		JBrowse link
G Itga5 integrin subunit alpha 5 ISO PID PID:200134 PID:200192 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itgb1 integrin subunit beta 1 ISO PID PID:200134 PID:200192 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Kng1 kininogen 1 ISO PID PID:200192 NCBI chr11:91,317,354...91,340,148
Ensembl chr11:91,317,355...91,340,148 		JBrowse link
G Kng2 kininogen 2 ISO PID PID:200192 NCBI chr11:91,418,470...91,440,841
Ensembl chr11:91,414,207...91,441,259 		JBrowse link
G Lama1 laminin subunit alpha 1 ISO PID PID:200134 PID:200192 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:115,139,548...115,264,251 		JBrowse link
G Lama3 laminin subunit alpha 3 ISO PID PID:200134 PID:200192 NCBI chr18:3,797,898...4,033,021
Ensembl chr18:3,797,939...4,026,449 		JBrowse link
G Lama5 laminin subunit alpha 5 ISO PID PID:200156 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:187,647,904...187,696,173 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO PID PID:200156 PID:200192 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:97,462,025...97,527,825 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO PID PID:200156 PID:200192 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200192 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,645,198...8,728,427 		JBrowse link
G Mc4r melanocortin 4 receptor ISO PID PID:200198 NCBI chr18:62,689,798...62,691,685 JBrowse link
G Mdk midkine ISO PID PID:200134 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:98,356,789...98,358,743 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO PID PID:200156 NCBI chr 4:46,756,823...46,864,041
Ensembl chr 4:46,756,506...46,870,821 		JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO PID PID:200156 NCBI chr 8:12,943,453...12,963,966
Ensembl chr 8:12,943,453...12,963,964 		JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO PID PID:200192 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:30,327,643...30,355,856 		JBrowse link
G Mmp7 matrix metallopeptidase 7 ISO PID PID:200156 NCBI chr 8:13,133,043...13,140,761
Ensembl chr 8:13,133,043...13,140,755 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO PID PID:200134 PID:200156 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:174,084,123...174,111,442 		JBrowse link
G Ncan neurocan ISO PID PID:200198 NCBI chr16:19,335,907...19,362,371
Ensembl chr16:19,335,907...19,362,371 		JBrowse link
G Ncstn nicastrin ISO PID PID:200198 NCBI chr13:87,062,827...87,078,839
Ensembl chr13:87,062,831...87,078,839 		JBrowse link
G Nf1 neurofibromin 1 ISO PID PID:200192 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,804,266...65,034,946 		JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 ISO PID PID:200134 NCBI chr10:11,142,626...11,144,542
Ensembl chr10:11,142,627...11,144,764 		JBrowse link
G Plg plasminogen ISO PID PID:200134 NCBI chr 1:50,872,927...50,915,406
Ensembl chr 1:50,872,926...50,917,320 		JBrowse link
G Pomc proopiomelanocortin ISO PID PID:200198 NCBI chr 6:32,659,137...32,665,175
Ensembl chr 6:32,659,346...32,665,173 		JBrowse link
G Ppib peptidylprolyl isomerase B ISO PID PID:200156 NCBI chr 8:75,498,966...75,504,823
Ensembl chr 8:75,498,797...75,504,847 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO PID PID:200156 PID:200192 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:41,059,843...41,086,494 		JBrowse link
G Prkca protein kinase C, alpha ISO PID PID:200134 NCBI chr10:93,388,991...93,787,617
Ensembl chr10:93,388,991...93,787,572 		JBrowse link
G Prkcd protein kinase C, delta ISO PID PID:200134 PID:200192 NCBI chr16:5,775,681...5,806,122
Ensembl chr16:5,775,681...5,805,839 		JBrowse link
G Psen1 presenilin 1 ISO PID PID:200198 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Psenen presenilin enhancer gamma secretase subunit ISO PID PID:200198 NCBI chr 1:94,942,348...94,943,545
Ensembl chr 1:94,942,225...94,943,752 		JBrowse link
G Ptn pleiotrophin ISO PID PID:200198 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:66,260,764...66,342,482 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200134 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:16,128,649...16,172,109 		JBrowse link
G Rack1 receptor for activated C kinase 1 ISO PID PID:200192 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,670,270...33,675,948 		JBrowse link
G Rasa1 RAS p21 protein activator 1 ISO PID PID:200192 NCBI chr 2:17,593,136...17,676,707
Ensembl chr 2:17,593,136...17,676,161 		JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200134 PID:200192 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:117,870,270...117,904,302 		JBrowse link
G Sdc1 syndecan 1 ISO PID PID:200156 NCBI chr 6:37,282,041...37,304,503
Ensembl chr 6:37,297,010...37,304,500 		JBrowse link
G Sdc2 syndecan 2 ISO PID PID:200192 NCBI chr 7:66,012,405...66,125,101
Ensembl chr 7:66,108,853...66,126,294 		JBrowse link
G Sdc3 syndecan 3 ISO PID PID:200198 NCBI chr 5:148,249,792...148,282,524
Ensembl chr 5:148,271,842...148,280,614 		JBrowse link
G Sdc4 syndecan 4 ISO PID PID:200134 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:173,574,239...173,593,670 		JBrowse link
G Sdcbp syndecan binding protein ISO PID PID:200134 PID:200156 PID:200192 NCBI chr 5:24,245,279...24,314,712
Ensembl chr 5:24,245,033...24,326,197 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200192 PID:200198 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:166,511,985...166,559,462 		JBrowse link
G Tfpi tissue factor pathway inhibitor ISO PID PID:200134 NCBI chr 3:89,939,862...89,989,253
Ensembl chr 3:89,939,868...89,980,742 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO PID PID:200156 PID:200192 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Thbs1 thrombospondin 1 ISO PID PID:200134 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:125,510,250...125,525,402 		JBrowse link
G Tnc tenascin C ISO PID PID:200134 NCBI chr 5:82,391,340...82,476,197
Ensembl chr 5:82,391,340...82,476,131 		JBrowse link
G Tnfrsf13b TNF receptor superfamily member 13B ISO PID PID:200134 PID:200192 NCBI chr10:46,301,336...46,322,460
Ensembl chr10:46,301,316...46,324,408 		JBrowse link
G Trappc4 trafficking protein particle complex subunit 4 ISO PID PID:200192 NCBI chr 8:53,626,382...53,630,042
Ensembl chr 8:53,625,474...53,630,241 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6090
    signaling pathway 2634
      cell adhesion signaling pathway 413
        altered cell adhesion signaling pathway + 26
        cell-cell signaling pathway + 253
        cell-extracellular matrix signaling pathway + 156
        integrin mediated signaling pathway + 50
paths to the root